RNA–Protein interactions for RNA: ENST00000589677.5

SMARCA4-214, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 5,181 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-214ENST00000589677 PSME1Q06323 249 aa16.88■□□□□ 0.29
SMARCA4-214ENST00000589677 ZSWIM4Q9H7M6 989 aa16.88■□□□□ 0.29
SMARCA4-214ENST00000589677 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.88■□□□□ 0.295e-6■□□□□ 10.3
SMARCA4-214ENST00000589677 CCDC141Q6ZP82 1450 aa16.88■□□□□ 0.29
SMARCA4-214ENST00000589677 UBASH3AP57075 661 aa16.88■□□□□ 0.29
SMARCA4-214ENST00000589677 CDK19Q9BWU1 502 aa16.88■□□□□ 0.29
SMARCA4-214ENST00000589677 SDSP20132 328 aa16.88■□□□□ 0.29
SMARCA4-214ENST00000589677 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.87■□□□□ 0.29
SMARCA4-214ENST00000589677 BIN1O00499 593 aa16.87■□□□□ 0.29
SMARCA4-214ENST00000589677 SEC24BO95487 1268 aa16.87■□□□□ 0.29
SMARCA4-214ENST00000589677 KANK3Q6NY19 840 aa16.87■□□□□ 0.29
SMARCA4-214ENST00000589677 EVI5LQ96CN4 794 aa16.87■□□□□ 0.29
SMARCA4-214ENST00000589677 BCCIPQ9P287 314 aaKnown RBP eCLIP16.87■□□□□ 0.29
SMARCA4-214ENST00000589677 PIP4K2BP78356 416 aa16.87■□□□□ 0.29
SMARCA4-214ENST00000589677 RPGRIP1LQ68CZ1 1315 aa16.87■□□□□ 0.29
SMARCA4-214ENST00000589677 HMG20BQ9P0W2 317 aa16.86■□□□□ 0.29
SMARCA4-214ENST00000589677 PTPN23Q9H3S7 1636 aa16.86■□□□□ 0.29
SMARCA4-214ENST00000589677 CCDC113Q9H0I3 377 aa16.86■□□□□ 0.29
SMARCA4-214ENST00000589677 SLC52A1Q9NWF4 448 aa16.86■□□□□ 0.29
SMARCA4-214ENST00000589677 DACT1Q9NYF0 836 aa16.86■□□□□ 0.29
SMARCA4-214ENST00000589677 RIOK3O14730 519 aaKnown RBP16.86■□□□□ 0.29
SMARCA4-214ENST00000589677 UBAC1Q9BSL1 405 aa16.86■□□□□ 0.29
SMARCA4-214ENST00000589677 VPS18Q9P253 973 aa16.86■□□□□ 0.29
SMARCA4-214ENST00000589677 RNF123Q5XPI4 1314 aa16.86■□□□□ 0.29
SMARCA4-214ENST00000589677 ZNF500O60304 480 aaPredicted RBP16.85■□□□□ 0.29
SMARCA4-214ENST00000589677 SPECC1Q5M775 1068 aa16.85■□□□□ 0.29
SMARCA4-214ENST00000589677 KRBA2Q6ZNG9 492 aa16.85■□□□□ 0.29
SMARCA4-214ENST00000589677 DNAJC25Q9H1X3 360 aa16.85■□□□□ 0.29
SMARCA4-214ENST00000589677 CTDP1Q9Y5B0 961 aaPredicted RBP16.85■□□□□ 0.29
SMARCA4-214ENST00000589677 PLB1Q6P1J6 1458 aa16.85■□□□□ 0.29
SMARCA4-214ENST00000589677 ARHGEF11O15085 1522 aa16.85■□□□□ 0.29
SMARCA4-214ENST00000589677 CAMSAP2Q08AD1 1489 aa16.85■□□□□ 0.29
SMARCA4-214ENST00000589677 FGFR1OPO95684 399 aaKnown RBP16.85■□□□□ 0.29
SMARCA4-214ENST00000589677 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.85■□□□□ 0.291e-6■■■■■ 118.1
SMARCA4-214ENST00000589677 U2AF2P26368 475 aaKnown RBP eCLIP16.85■□□□□ 0.29
SMARCA4-214ENST00000589677 CCDC102BQ68D86 513 aa16.85■□□□□ 0.29
SMARCA4-214ENST00000589677 MAATS1Q7Z4T9 603 aa16.85■□□□□ 0.29
SMARCA4-214ENST00000589677 PLCD3Q8N3E9 789 aa16.85■□□□□ 0.29
SMARCA4-214ENST00000589677 LIG1P18858 919 aa16.85■□□□□ 0.29
SMARCA4-214ENST00000589677 SYT1P21579 422 aa16.85■□□□□ 0.29
SMARCA4-214ENST00000589677 RBM42Q9BTD8 480 aaKnown RBP16.85■□□□□ 0.29
SMARCA4-214ENST00000589677 CACNA2D4Q7Z3S7 1137 aa16.84■□□□□ 0.29
SMARCA4-214ENST00000589677 PARD3Q8TEW0 1356 aa16.84■□□□□ 0.29
SMARCA4-214ENST00000589677 FKBP4Q02790 459 aaKnown RBP eCLIP16.84■□□□□ 0.29
SMARCA4-214ENST00000589677 HLTFQ14527 1009 aaKnown RBP eCLIP16.84■□□□□ 0.291e-6■□□□□ 10.1
SMARCA4-214ENST00000589677 CCDC178Q5BJE1 867 aa16.84■□□□□ 0.29
SMARCA4-214ENST00000589677 GUCY1B3Q02153 619 aa16.84■□□□□ 0.29
SMARCA4-214ENST00000589677 KDM2BQ8NHM5 1336 aa16.84■□□□□ 0.29
SMARCA4-214ENST00000589677 CCDC196A0A1B0GTZ2 297 aa16.84■□□□□ 0.29
SMARCA4-214ENST00000589677 TDO2P48775 406 aa16.84■□□□□ 0.29
SMARCA4-214ENST00000589677 SOGA3Q5TF21 947 aa16.84■□□□□ 0.29
SMARCA4-214ENST00000589677 OTUD6BQ8N6M0 293 aa16.84■□□□□ 0.29
SMARCA4-214ENST00000589677 DDX54Q8TDD1 881 aaKnown RBP16.84■□□□□ 0.29
SMARCA4-214ENST00000589677 LARP6Q9BRS8 491 aaKnown RBP16.84■□□□□ 0.29
SMARCA4-214ENST00000589677 ESYT1Q9BSJ8 1104 aa16.84■□□□□ 0.29
SMARCA4-214ENST00000589677 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.84■□□□□ 0.291e-8■■■□□ 18.8
SMARCA4-214ENST00000589677 HDXQ7Z353 690 aa16.83■□□□□ 0.29
SMARCA4-214ENST00000589677 VPS36Q86VN1 386 aa16.83■□□□□ 0.29
SMARCA4-214ENST00000589677 THUMPD2Q9BTF0 503 aaKnown RBP16.83■□□□□ 0.29
SMARCA4-214ENST00000589677 SPG7Q9UQ90 795 aa16.83■□□□□ 0.29
SMARCA4-214ENST00000589677 KIF14Q15058 1648 aa16.83■□□□□ 0.29
SMARCA4-214ENST00000589677 PPP1R9BQ96SB3 815 aa16.83■□□□□ 0.29
SMARCA4-214ENST00000589677 MTMR7Q9Y216 660 aa16.83■□□□□ 0.29
SMARCA4-214ENST00000589677 GBP6Q6ZN66 633 aa16.83■□□□□ 0.28
SMARCA4-214ENST00000589677 CTAGE1Q96RT6 745 aa16.83■□□□□ 0.28
SMARCA4-214ENST00000589677 NSD2O96028 1365 aa16.83■□□□□ 0.28
SMARCA4-214ENST00000589677 CNNM1Q9NRU3 951 aa16.83■□□□□ 0.28
SMARCA4-214ENST00000589677 JADE2Q9NQC1 790 aa16.83■□□□□ 0.28
SMARCA4-214ENST00000589677 CEP126Q9P2H0 1117 aa16.83■□□□□ 0.28
SMARCA4-214ENST00000589677 CTAGE9A4FU28 777 aa16.82■□□□□ 0.28
SMARCA4-214ENST00000589677 CTCFLQ8NI51 663 aaPredicted RBP16.82■□□□□ 0.28
SMARCA4-214ENST00000589677 GTF3C6Q969F1 213 aa16.82■□□□□ 0.28
SMARCA4-214ENST00000589677 ECHDC1Q9NTX5 307 aa16.82■□□□□ 0.28
SMARCA4-214ENST00000589677 GNL3LQ9NVN8 582 aaKnown RBP16.82■□□□□ 0.28
SMARCA4-214ENST00000589677 ABCC5O15440 1437 aa16.82■□□□□ 0.28
SMARCA4-214ENST00000589677 AOPEPQ8N6M6 819 aa16.82■□□□□ 0.28
SMARCA4-214ENST00000589677 PYM1Q9BRP8 204 aaKnown RBP16.82■□□□□ 0.28
SMARCA4-214ENST00000589677 FAM177BA6PVY3 158 aa16.82■□□□□ 0.28
SMARCA4-214ENST00000589677 DNM1Q05193 864 aaKnown RBP16.82■□□□□ 0.28
SMARCA4-214ENST00000589677 SYT10Q6XYQ8 523 aa16.82■□□□□ 0.28
SMARCA4-214ENST00000589677 BOLA2Q9H3K6 86 aa16.82■□□□□ 0.28
SMARCA4-214ENST00000589677 KCNG4Q8TDN1 519 aa16.81■□□□□ 0.28
SMARCA4-214ENST00000589677 MRPS27Q92552 414 aaKnown RBP16.81■□□□□ 0.28
SMARCA4-214ENST00000589677 TAOK3Q9H2K8 898 aa16.81■□□□□ 0.28
SMARCA4-214ENST00000589677 SEPT11Q9NVA2 429 aaKnown RBP16.81■□□□□ 0.28
SMARCA4-214ENST00000589677 NPHP3Q7Z494 1330 aa16.81■□□□□ 0.28
SMARCA4-214ENST00000589677 TSG101Q99816 390 aa16.81■□□□□ 0.28
SMARCA4-214ENST00000589677 EVA1CP58658 441 aa16.81■□□□□ 0.28
SMARCA4-214ENST00000589677 ZHX3Q9H4I2 956 aa16.81■□□□□ 0.28
SMARCA4-214ENST00000589677 UTP14CQ5TAP6 766 aaKnown RBP16.81■□□□□ 0.28
SMARCA4-214ENST00000589677 MSL1Q68DK7 614 aa16.81■□□□□ 0.28
SMARCA4-214ENST00000589677 CCDC121Q6ZUS5 278 aa16.81■□□□□ 0.28
SMARCA4-214ENST00000589677 GOPCQ9HD26 462 aa16.8■□□□□ 0.28
SMARCA4-214ENST00000589677 RALGAPBQ86X10 1494 aa16.8■□□□□ 0.28
SMARCA4-214ENST00000589677 NEK1Q96PY6 1258 aa16.8■□□□□ 0.28
SMARCA4-214ENST00000589677 NSRP1Q9H0G5 558 aaKnown RBP16.8■□□□□ 0.28
SMARCA4-214ENST00000589677 PDE1AP54750 535 aa16.79■□□□□ 0.28
SMARCA4-214ENST00000589677 KIF6Q6ZMV9 814 aa16.79■□□□□ 0.28
SMARCA4-214ENST00000589677 PPM1EQ8WY54 764 aa16.79■□□□□ 0.28
SMARCA4-214ENST00000589677 SYKP43405 635 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms