RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 TIMM10P62072 90 aa6.78□□□□□ -1.32
LIMA1-215ENST00000552823 PTH1RQ03431 593 aa6.78□□□□□ -1.32
LIMA1-215ENST00000552823 COL9A3Q14050 684 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-215ENST00000552823 DDX46Q7L014 1031 aaKnown RBP6.78□□□□□ -1.32
LIMA1-215ENST00000552823 CNTROBQ8N137 903 aa6.78□□□□□ -1.32
LIMA1-215ENST00000552823 SYNE4Q8N205 404 aa6.78□□□□□ -1.32
LIMA1-215ENST00000552823 JAKMIP1Q96N16 626 aaKnown RBP6.78□□□□□ -1.32
LIMA1-215ENST00000552823 IGKV5-2P06315 115 aa6.77□□□□□ -1.33
LIMA1-215ENST00000552823 LMBR1LQ6UX01 489 aa6.77□□□□□ -1.33
LIMA1-215ENST00000552823 RAB11FIP4Q86YS3 637 aa6.77□□□□□ -1.33
LIMA1-215ENST00000552823 CCDC83Q8IWF9 413 aa6.77□□□□□ -1.33
LIMA1-215ENST00000552823 SSH3Q8TE77 659 aa6.77□□□□□ -1.33
LIMA1-215ENST00000552823 SEC62Q99442 399 aaKnown RBP6.77□□□□□ -1.33
LIMA1-215ENST00000552823 VPS37CA5D8V6 355 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-215ENST00000552823 DDX11L8A8MPP1 907 aa6.77□□□□□ -1.33
LIMA1-215ENST00000552823 PIP4K2BP78356 416 aa6.77□□□□□ -1.33
LIMA1-215ENST00000552823 FAM173BQ6P4H8 233 aa6.77□□□□□ -1.33
LIMA1-215ENST00000552823 SNX21Q969T3 373 aa6.77□□□□□ -1.33
LIMA1-215ENST00000552823 ACSBG1Q96GR2 724 aa6.77□□□□□ -1.33
LIMA1-215ENST00000552823 SLC52A2Q9HAB3 445 aa6.77□□□□□ -1.33
LIMA1-215ENST00000552823 NPHP3Q7Z494 1330 aa6.77□□□□□ -1.33
LIMA1-215ENST00000552823 PXDNQ92626 1479 aa6.77□□□□□ -1.33
LIMA1-215ENST00000552823 NPM3O75607 178 aaKnown RBP6.77□□□□□ -1.33
LIMA1-215ENST00000552823 KCNQ4P56696 695 aa6.77□□□□□ -1.33
LIMA1-215ENST00000552823 TFCP2Q12800 502 aa6.77□□□□□ -1.33
LIMA1-215ENST00000552823 GORABQ5T7V8 394 aa6.77□□□□□ -1.33
LIMA1-215ENST00000552823 DDX21Q9NR30 783 aaKnown RBP eCLIP6.77□□□□□ -1.33
LIMA1-215ENST00000552823 NSFL1CQ9UNZ2 370 aaKnown RBP6.77□□□□□ -1.33
LIMA1-215ENST00000552823 ITSN1Q15811 1721 aa6.77□□□□□ -1.33
LIMA1-215ENST00000552823 FIBPO43427 364 aa6.76□□□□□ -1.33
LIMA1-215ENST00000552823 RAB3GAP1Q15042 981 aa6.76□□□□□ -1.33
LIMA1-215ENST00000552823 ADCK5Q3MIX3 580 aa6.76□□□□□ -1.33
LIMA1-215ENST00000552823 TAF7LQ5H9L4 462 aa6.76□□□□□ -1.33
LIMA1-215ENST00000552823 SMIM5Q71RC9 77 aa6.76□□□□□ -1.33
LIMA1-215ENST00000552823 CADPS2Q86UW7 1296 aa6.76□□□□□ -1.33
LIMA1-215ENST00000552823 HYPKQ9NX55 129 aa6.76□□□□□ -1.33
LIMA1-215ENST00000552823 ADCY9O60503 1353 aa6.76□□□□□ -1.33
LIMA1-215ENST00000552823 C3P01024 1663 aa6.76□□□□□ -1.33
LIMA1-215ENST00000552823 SASH1O94885 1247 aa6.76□□□□□ -1.33
LIMA1-215ENST00000552823 SNRPA1P09661 255 aaKnown RBP6.76□□□□□ -1.33
LIMA1-215ENST00000552823 NMIQ13287 307 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-215ENST00000552823 CHST3Q7LGC8 479 aa6.76□□□□□ -1.33
LIMA1-215ENST00000552823 KLHL34Q8N239 644 aa6.76□□□□□ -1.33
LIMA1-215ENST00000552823 LINS1Q8NG48 757 aa6.76□□□□□ -1.33
LIMA1-215ENST00000552823 ZCRB1Q8TBF4 217 aaKnown RBP6.76□□□□□ -1.33
LIMA1-215ENST00000552823 FMNL2Q96PY5 1086 aa6.76□□□□□ -1.33
LIMA1-215ENST00000552823 DBNDD2Q9BQY9 259 aa6.76□□□□□ -1.33
LIMA1-215ENST00000552823 ECHDC1Q9NTX5 307 aa6.76□□□□□ -1.33
LIMA1-215ENST00000552823 IBTKQ9P2D0 1353 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-215ENST00000552823 SETD1AO15047 1707 aaKnown RBP6.76□□□□□ -1.33
LIMA1-215ENST00000552823 FKBP4Q02790 459 aaKnown RBP eCLIP6.75□□□□□ -1.33
LIMA1-215ENST00000552823 FAM89AQ96GI7 184 aa6.75□□□□□ -1.33
LIMA1-215ENST00000552823 KAZALD1Q96I82 304 aa6.75□□□□□ -1.33
LIMA1-215ENST00000552823 TAF6LQ9Y6J9 622 aa6.75□□□□□ -1.33
LIMA1-215ENST00000552823 CEBPZQ03701 1054 aaKnown RBP6.75□□□□□ -1.33
LIMA1-215ENST00000552823 L1TD1Q5T7N2 865 aaKnown RBP6.75□□□□□ -1.33
LIMA1-215ENST00000552823 BRINP3Q76B58 766 aa6.75□□□□□ -1.33
LIMA1-215ENST00000552823 PI4K2BQ8TCG2 481 aa6.75□□□□□ -1.33
LIMA1-215ENST00000552823 CHMP4CQ96CF2 233 aa6.75□□□□□ -1.33
LIMA1-215ENST00000552823 TRIM44Q96DX7 344 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-215ENST00000552823 SLAIN2Q9P270 581 aa6.75□□□□□ -1.33
LIMA1-215ENST00000552823 ASAP1Q9ULH1 1129 aa6.75□□□□□ -1.33
LIMA1-215ENST00000552823 TBC1D2BQ9UPU7 963 aa6.75□□□□□ -1.33
LIMA1-215ENST00000552823 SYCE3A1L190 88 aa6.75□□□□□ -1.33
LIMA1-215ENST00000552823 NEURL1BA8MQ27 555 aa6.75□□□□□ -1.33
LIMA1-215ENST00000552823 LARGE1O95461 756 aa6.75□□□□□ -1.33
LIMA1-215ENST00000552823 HSP90B1P14625 803 aaKnown RBP6.75□□□□□ -1.33
LIMA1-215ENST00000552823 AK2P54819 239 aa6.75□□□□□ -1.33
LIMA1-215ENST00000552823 HELBQ8NG08 1087 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-215ENST00000552823 DDX11Q96FC9 970 aa6.75□□□□□ -1.33
LIMA1-215ENST00000552823 GPATCH3Q96I76 525 aa6.75□□□□□ -1.33
LIMA1-215ENST00000552823 PUS3Q9BZE2 481 aaKnown RBP6.75□□□□□ -1.33
LIMA1-215ENST00000552823 GRPEL1Q9HAV7 217 aa6.75□□□□□ -1.33
LIMA1-215ENST00000552823 BTG4Q9NY30 223 aa6.75□□□□□ -1.33
LIMA1-215ENST00000552823 REREQ9P2R6 1566 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 ARHGAP23Q9P227 1491 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 ADGRL3Q9HAR2 1447 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 SNAP23O00161 211 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 RAB11FIP3O75154 756 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 GLRX3O76003 335 aaKnown RBP6.74□□□□□ -1.33
LIMA1-215ENST00000552823 GCKRQ14397 625 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 PDIA6Q15084 440 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 DNAJC10Q8IXB1 793 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 SNX14Q9Y5W7 946 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 ANKRD26Q9UPS8 1709 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 A0A0D9SFI3 127 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 GOLIM4O00461 696 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 GADD45BO75293 160 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-215ENST00000552823 LRRC24Q50LG9 513 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 HSP90AB4PQ58FF6 505 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 SMC3Q9UQE7 1217 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 ZDHHC9Q9Y397 364 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 FER1L4A9Z1Z3 1794 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 NBPF26B4DH59 902 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 HAND2P61296 217 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 NUCB2P80303 420 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 NBPF14Q5TI25 921 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 NBPF10Q6P3W6 841 aaKnown RBP6.74□□□□□ -1.33
LIMA1-215ENST00000552823 CCDC24Q8N4L8 307 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 NBPF15Q8N660 670 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms