RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 POLR3AO14802 1390 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-203ENST00000547825 SOCS7O14512 581 aa6.93□□□□□ -1.3
LIMA1-203ENST00000547825 HSP90AB1P08238 724 aaKnown RBP6.93□□□□□ -1.3
LIMA1-203ENST00000547825 CSB-PGBD3P0DP91 1061 aa6.93□□□□□ -1.3
LIMA1-203ENST00000547825 FUT2Q10981 343 aa6.93□□□□□ -1.3
LIMA1-203ENST00000547825 CCDC146Q8IYE0 955 aa6.93□□□□□ -1.3
LIMA1-203ENST00000547825 NFAT5O94916 1531 aa6.92□□□□□ -1.3
LIMA1-203ENST00000547825 GOLGA6L3A6NEY3 463 aa6.92□□□□□ -1.3
LIMA1-203ENST00000547825 NBPF26B4DH59 902 aa6.92□□□□□ -1.3
LIMA1-203ENST00000547825 GOLGA6L22H0YM25 854 aa6.92□□□□□ -1.3
LIMA1-203ENST00000547825 PARD3Q8TEW0 1356 aa6.92□□□□□ -1.3
LIMA1-203ENST00000547825 MTMR2Q13614 643 aa6.92□□□□□ -1.3
LIMA1-203ENST00000547825 GLI3P10071 1580 aa6.92□□□□□ -1.3
LIMA1-203ENST00000547825 SWT1Q5T5J6 900 aaKnown RBP6.92□□□□□ -1.3
LIMA1-203ENST00000547825 CDK12Q9NYV4 1490 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-203ENST00000547825 C6orf229H3BNL8 230 aa6.91□□□□□ -1.3
LIMA1-203ENST00000547825 PIK3CDO00329 1044 aa6.91□□□□□ -1.3
LIMA1-203ENST00000547825 PTPREP23469 700 aa6.91□□□□□ -1.3
LIMA1-203ENST00000547825 AMOTL2Q9Y2J4 779 aa6.91□□□□□ -1.3
LIMA1-203ENST00000547825 SOS2Q07890 1332 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-203ENST00000547825 SLC26A8Q96RN1 970 aa6.91□□□□□ -1.3
LIMA1-203ENST00000547825 HDGFP51858 240 aaKnown RBP6.91□□□□□ -1.3
LIMA1-203ENST00000547825 BCL2L13Q9BXK5 485 aa6.91□□□□□ -1.3
LIMA1-203ENST00000547825 MYH16Q9H6N6 1097 aa6.91□□□□□ -1.3
LIMA1-203ENST00000547825 MAFBQ9Y5Q3 323 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-203ENST00000547825 POTEB2H3BUK9 544 aa6.9□□□□□ -1.3
LIMA1-203ENST00000547825 RGPD1P0DJD0 1748 aa6.9□□□□□ -1.3
LIMA1-203ENST00000547825 BLMP54132 1417 aaPredicted RBP6.9□□□□□ -1.3
LIMA1-203ENST00000547825 CPSF1Q10570 1443 aaKnown RBP6.9□□□□□ -1.3
LIMA1-203ENST00000547825 KCNK17Q96T54 332 aa6.9□□□□□ -1.3
LIMA1-203ENST00000547825 BACH2Q9BYV9 841 aa6.9□□□□□ -1.3
LIMA1-203ENST00000547825 KIAA1468Q9P260 1216 aa6.9□□□□□ -1.3
LIMA1-203ENST00000547825 RREB1Q92766 1687 aa6.9□□□□□ -1.3
LIMA1-203ENST00000547825 PPP4R3BQ5MIZ7 849 aa6.9□□□□□ -1.3
LIMA1-203ENST00000547825 MSNP26038 577 aaKnown RBP6.9□□□□□ -1.31
LIMA1-203ENST00000547825 WASHC4Q2M389 1173 aa6.9□□□□□ -1.31
LIMA1-203ENST00000547825 USTQ9Y2C2 406 aa6.9□□□□□ -1.31
LIMA1-203ENST00000547825 HSCBQ8IWL3 235 aa6.89□□□□□ -1.31
LIMA1-203ENST00000547825 TESK2Q96S53 571 aa6.89□□□□□ -1.31
LIMA1-203ENST00000547825 RGPD2P0DJD1 1756 aa6.89□□□□□ -1.31
LIMA1-203ENST00000547825 SLIT2O94813 1529 aa6.89□□□□□ -1.31
LIMA1-203ENST00000547825 PACS2Q86VP3 889 aa6.89□□□□□ -1.31
LIMA1-203ENST00000547825 STK32AQ8WU08 396 aa6.89□□□□□ -1.31
LIMA1-203ENST00000547825 MSH6P52701 1360 aa6.89□□□□□ -1.31
LIMA1-203ENST00000547825 PNPLA6Q8IY17 1366 aa6.89□□□□□ -1.31
LIMA1-203ENST00000547825 HELBQ8NG08 1087 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-203ENST00000547825 C19orf44Q9H6X5 657 aa6.89□□□□□ -1.31
LIMA1-203ENST00000547825 SCNN1AP37088 669 aa6.88□□□□□ -1.31
LIMA1-203ENST00000547825 PSEN2P49810 448 aa6.88□□□□□ -1.31
LIMA1-203ENST00000547825 KCNA1Q09470 495 aa6.88□□□□□ -1.31
LIMA1-203ENST00000547825 CCDC27Q2M243 656 aa6.88□□□□□ -1.31
LIMA1-203ENST00000547825 BRINP3Q76B58 766 aa6.88□□□□□ -1.31
LIMA1-203ENST00000547825 VRTNQ9H8Y1 702 aa6.88□□□□□ -1.31
LIMA1-203ENST00000547825 RGS17Q9UGC6 210 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-203ENST00000547825 KDM2BQ8NHM5 1336 aa6.88□□□□□ -1.31
LIMA1-203ENST00000547825 PKNOX2Q96KN3 472 aa6.88□□□□□ -1.31
LIMA1-203ENST00000547825 LRRC37A3O60309 1634 aa6.87□□□□□ -1.31
LIMA1-203ENST00000547825 SBNO1A3KN83 1393 aa6.87□□□□□ -1.31
LIMA1-203ENST00000547825 PRR36Q9H6K5 1346 aa6.87□□□□□ -1.31
LIMA1-203ENST00000547825 EP400Q96L91 3159 aa6.87□□□□□ -1.31
LIMA1-203ENST00000547825 QSER1Q2KHR3 1735 aa6.87□□□□□ -1.31
LIMA1-203ENST00000547825 DOK7Q18PE1 504 aa6.87□□□□□ -1.31
LIMA1-203ENST00000547825 ZMIZ1Q9ULJ6 1067 aa6.87□□□□□ -1.31
LIMA1-203ENST00000547825 RRP7AQ9Y3A4 280 aaKnown RBP6.87□□□□□ -1.31
LIMA1-203ENST00000547825 U2SURPO15042 1029 aaKnown RBP6.87□□□□□ -1.31
LIMA1-203ENST00000547825 PUS10Q3MIT2 529 aaKnown RBP6.87□□□□□ -1.31
LIMA1-203ENST00000547825 NLRP13Q86W25 1043 aa6.87□□□□□ -1.31
LIMA1-203ENST00000547825 BRD4O60885 1362 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-203ENST00000547825 PKD1L3Q7Z443 1732 aa6.86□□□□□ -1.31
LIMA1-203ENST00000547825 MYBBP1AQ9BQG0 1328 aaKnown RBP6.86□□□□□ -1.31
LIMA1-203ENST00000547825 DEPDC4Q8N2C3 294 aa6.86□□□□□ -1.31
LIMA1-203ENST00000547825 CICQ96RK0 1608 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-203ENST00000547825 A0A0U1RQG5 324 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-203ENST00000547825 HSPA1LP34931 641 aa6.86□□□□□ -1.31
LIMA1-203ENST00000547825 UNCXA6NJT0 531 aa6.86□□□□□ -1.31
LIMA1-203ENST00000547825 FAM13BQ9NYF5 915 aa6.86□□□□□ -1.31
LIMA1-203ENST00000547825 SLAIN2Q9P270 581 aa6.86□□□□□ -1.31
LIMA1-203ENST00000547825 ADAMTS7Q9UKP4 1686 aa6.86□□□□□ -1.31
LIMA1-203ENST00000547825 USP19O94966 1318 aa6.85□□□□□ -1.31
LIMA1-203ENST00000547825 C8orf34Q49A92 452 aa6.85□□□□□ -1.31
LIMA1-203ENST00000547825 TMEM164Q5U3C3 297 aa6.85□□□□□ -1.31
LIMA1-203ENST00000547825 PHLDB3Q6NSJ2 640 aa6.85□□□□□ -1.31
LIMA1-203ENST00000547825 SND1Q7KZF4 910 aaKnown RBP eCLIP6.85□□□□□ -1.31
LIMA1-203ENST00000547825 KTN1Q86UP2 1357 aaKnown RBP6.85□□□□□ -1.31
LIMA1-203ENST00000547825 BCL9LQ86UU0 1499 aa6.85□□□□□ -1.31
LIMA1-203ENST00000547825 USP46P62068 366 aa6.85□□□□□ -1.31
LIMA1-203ENST00000547825 ATRNO75882 1429 aa6.85□□□□□ -1.31
LIMA1-203ENST00000547825 RALBP1Q15311 655 aa6.85□□□□□ -1.31
LIMA1-203ENST00000547825 TNS3Q68CZ2 1445 aa6.85□□□□□ -1.31
LIMA1-203ENST00000547825 ZNF521Q96K83 1311 aa6.85□□□□□ -1.31
LIMA1-203ENST00000547825 RNF40O75150 1001 aa6.84□□□□□ -1.31
LIMA1-203ENST00000547825 ATG7O95352 703 aa6.84□□□□□ -1.31
LIMA1-203ENST00000547825 FOXD4L6Q3SYB3 417 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-203ENST00000547825 FOXD4L3Q6VB84 417 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-203ENST00000547825 FBXO45P0C2W1 286 aa6.84□□□□□ -1.31
LIMA1-203ENST00000547825 TMF1P82094 1093 aa6.84□□□□□ -1.31
LIMA1-203ENST00000547825 SEMA3FQ13275 785 aa6.84□□□□□ -1.31
LIMA1-203ENST00000547825 ZBED2Q9BTP6 218 aa6.84□□□□□ -1.31
LIMA1-203ENST00000547825 AXIN2Q9Y2T1 843 aa6.84□□□□□ -1.31
LIMA1-203ENST00000547825 TOM1O60784 492 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms