RNA–Protein interactions for RNA: ENST00000542817.1

NPIPB3-210, Transcript of nuclear pore complex interacting protein family member B3, human

TSL 5 BASIC

Gene NPIPB3, Length 1,342 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB3-210	ENST00000542817	MAP3K15	Q6ZN16	1313 aa		13.68	□□□□□ -0.22
NPIPB3-210	ENST00000542817	GYS1	P13807	737 aa		13.67	□□□□□ -0.22
NPIPB3-210	ENST00000542817	R3HDM1	Q15032	1099 aa	Known RBP	13.67	□□□□□ -0.22
NPIPB3-210	ENST00000542817	USPL1	Q5W0Q7	1092 aa		13.67	□□□□□ -0.22
NPIPB3-210	ENST00000542817	DZIP3	Q86Y13	1208 aa	Known RBP	13.67	□□□□□ -0.22
NPIPB3-210	ENST00000542817	RNF123	Q5XPI4	1314 aa		13.67	□□□□□ -0.22
NPIPB3-210	ENST00000542817	BCOR	Q6W2J9	1755 aa		13.67	□□□□□ -0.22
NPIPB3-210	ENST00000542817	ERVV-1	B6SEH8	477 aa		13.66	□□□□□ -0.22
NPIPB3-210	ENST00000542817		F6X3S4	739 aa		13.66	□□□□□ -0.22
NPIPB3-210	ENST00000542817	FKBP8	Q14318	412 aa		13.66	□□□□□ -0.22
NPIPB3-210	ENST00000542817	ANKRD13D	Q6ZTN6	518 aa		13.66	□□□□□ -0.22
NPIPB3-210	ENST00000542817	PLBD2	Q8NHP8	589 aa		13.66	□□□□□ -0.22
NPIPB3-210	ENST00000542817	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.66	□□□□□ -0.22
NPIPB3-210	ENST00000542817	SCN7A	Q01118	1682 aa		13.66	□□□□□ -0.22
NPIPB3-210	ENST00000542817		A0A087WZG4	1122 aa		13.65	□□□□□ -0.22
NPIPB3-210	ENST00000542817	PI4KAP2	A4QPH2	592 aa		13.65	□□□□□ -0.22
NPIPB3-210	ENST00000542817	PSD	A5PKW4	1024 aa	Predicted RBP	13.65	□□□□□ -0.22
NPIPB3-210	ENST00000542817	KSR2	Q6VAB6	950 aa		13.65	□□□□□ -0.22
NPIPB3-210	ENST00000542817	PI4KAP1	Q8N8J0	262 aa		13.65	□□□□□ -0.22
NPIPB3-210	ENST00000542817	ZBTB3	Q9H5J0	574 aa		13.65	□□□□□ -0.22
NPIPB3-210	ENST00000542817	RGL2	O15211	777 aa		13.64	□□□□□ -0.23
NPIPB3-210	ENST00000542817	PLIN1	O60240	522 aa		13.64	□□□□□ -0.23
NPIPB3-210	ENST00000542817	IGKV5-2	P06315	115 aa		13.64	□□□□□ -0.23
NPIPB3-210	ENST00000542817	TRIM27	P14373	513 aa		13.64	□□□□□ -0.23
NPIPB3-210	ENST00000542817	RFC4	P35249	363 aa		13.64	□□□□□ -0.23
NPIPB3-210	ENST00000542817	FLAD1	Q8NFF5	587 aa		13.64	□□□□□ -0.23
NPIPB3-210	ENST00000542817	ARHGAP45	Q92619	1136 aa		13.64	□□□□□ -0.23
NPIPB3-210	ENST00000542817	PTPRC	P08575	1304 aa		13.64	□□□□□ -0.23
NPIPB3-210	ENST00000542817	RLBP1	P12271	317 aa		13.64	□□□□□ -0.23
NPIPB3-210	ENST00000542817	TM4SF1	P30408	202 aa		13.64	□□□□□ -0.23
NPIPB3-210	ENST00000542817	FKBP5	Q13451	457 aa	Predicted RBP	13.64	□□□□□ -0.23
NPIPB3-210	ENST00000542817	CLEC4G	Q6UXB4	293 aa		13.64	□□□□□ -0.23
NPIPB3-210	ENST00000542817	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.64	□□□□□ -0.23
NPIPB3-210	ENST00000542817	ZNF34	Q8IZ26	560 aa		13.64	□□□□□ -0.23
NPIPB3-210	ENST00000542817	ISCA1	Q9BUE6	129 aa		13.64	□□□□□ -0.23
NPIPB3-210	ENST00000542817	MAP3K2	Q9Y2U5	619 aa		13.64	□□□□□ -0.23
NPIPB3-210	ENST00000542817	ARFGEF2	Q9Y6D5	1785 aa		13.63	□□□□□ -0.23
NPIPB3-210	ENST00000542817	UBN2	Q6ZU65	1347 aa		13.63	□□□□□ -0.23
NPIPB3-210	ENST00000542817	ATP10D	Q9P241	1426 aa		13.63	□□□□□ -0.23
NPIPB3-210	ENST00000542817	COL24A1	Q17RW2	1714 aa		13.63	□□□□□ -0.23
NPIPB3-210	ENST00000542817	NUP98	P52948	1817 aa		13.63	□□□□□ -0.23
NPIPB3-210	ENST00000542817	TCIRG1	Q13488	830 aa		13.63	□□□□□ -0.23
NPIPB3-210	ENST00000542817	BEND3	Q5T5X7	828 aa		13.63	□□□□□ -0.23
NPIPB3-210	ENST00000542817	C20orf194	Q5TEA3	1177 aa		13.63	□□□□□ -0.23
NPIPB3-210	ENST00000542817	TBC1D9B	Q66K14	1250 aa		13.63	□□□□□ -0.23
NPIPB3-210	ENST00000542817	ATF7IP	Q6VMQ6	1270 aa		13.63	□□□□□ -0.23
NPIPB3-210	ENST00000542817	KIF6	Q6ZMV9	814 aa		13.63	□□□□□ -0.23
NPIPB3-210	ENST00000542817	METTL22	Q9BUU2	404 aa	Predicted RBP	13.63	□□□□□ -0.23
NPIPB3-210	ENST00000542817	ABCC4	O15439	1325 aa		13.62	□□□□□ -0.23
NPIPB3-210	ENST00000542817	KIF16B	Q96L93	1317 aa		13.62	□□□□□ -0.23
NPIPB3-210	ENST00000542817	ZPR1	O75312	459 aa		13.62	□□□□□ -0.23
NPIPB3-210	ENST00000542817	DDR1	Q08345	913 aa		13.62	□□□□□ -0.23
NPIPB3-210	ENST00000542817	TRIM28	Q13263	835 aa	Known RBP	13.62	□□□□□ -0.23
NPIPB3-210	ENST00000542817	NFIX	Q14938	502 aa		13.62	□□□□□ -0.23
NPIPB3-210	ENST00000542817	DNAAF4	Q8WXU2	420 aa		13.62	□□□□□ -0.23
NPIPB3-210	ENST00000542817	SGIP1	Q9BQI5	828 aa		13.62	□□□□□ -0.23
NPIPB3-210	ENST00000542817	ATP5J2-PTCD1	G3V325	749 aa		13.61	□□□□□ -0.23
NPIPB3-210	ENST00000542817	MSL1	Q68DK7	614 aa		13.61	□□□□□ -0.23
NPIPB3-210	ENST00000542817	RIC3	Q7Z5B4	369 aa		13.61	□□□□□ -0.23
NPIPB3-210	ENST00000542817	FRAT1	Q92837	279 aa	Predicted RBP	13.61	□□□□□ -0.23
NPIPB3-210	ENST00000542817	DDX58	O95786	925 aa	Known RBP	13.6	□□□□□ -0.23
NPIPB3-210	ENST00000542817	RRP1	P56182	461 aa	Known RBP	13.6	□□□□□ -0.23
NPIPB3-210	ENST00000542817	CWF19L2	Q2TBE0	894 aa	Known RBP	13.6	□□□□□ -0.23
NPIPB3-210	ENST00000542817	ZKSCAN2	Q63HK3	967 aa		13.6	□□□□□ -0.23
NPIPB3-210	ENST00000542817	NLRP10	Q86W26	655 aa		13.6	□□□□□ -0.23
NPIPB3-210	ENST00000542817	SLC16A10	Q8TF71	515 aa		13.6	□□□□□ -0.23
NPIPB3-210	ENST00000542817	ARX	Q96QS3	562 aa		13.6	□□□□□ -0.23
NPIPB3-210	ENST00000542817	MYD88	Q99836	296 aa		13.6	□□□□□ -0.23
NPIPB3-210	ENST00000542817	API5	Q9BZZ5	524 aa	Known RBP	13.6	□□□□□ -0.23
NPIPB3-210	ENST00000542817	GTF3C3	Q9Y5Q9	886 aa		13.6	□□□□□ -0.23
NPIPB3-210	ENST00000542817	PXDNL	A1KZ92	1463 aa		13.59	□□□□□ -0.23
NPIPB3-210	ENST00000542817	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.59	□□□□□ -0.23
NPIPB3-210	ENST00000542817	NEURL1B	A8MQ27	555 aa		13.59	□□□□□ -0.23
NPIPB3-210	ENST00000542817	POLRMT	O00411	1230 aa	Known RBP	13.59	□□□□□ -0.23
NPIPB3-210	ENST00000542817	ZBTB7A	O95365	584 aa		13.59	□□□□□ -0.23
NPIPB3-210	ENST00000542817	PTGER2	P43116	358 aa		13.59	□□□□□ -0.23
NPIPB3-210	ENST00000542817	SUSD4	Q5VX71	490 aa		13.59	□□□□□ -0.23
NPIPB3-210	ENST00000542817	INTS3	Q68E01	1043 aa	Known RBP	13.59	□□□□□ -0.23
NPIPB3-210	ENST00000542817	PANK1	Q8TE04	598 aa		13.59	□□□□□ -0.23
NPIPB3-210	ENST00000542817	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.59	□□□□□ -0.23
NPIPB3-210	ENST00000542817	UTRN	P46939	3433 aa		13.59	□□□□□ -0.23
NPIPB3-210	ENST00000542817	IPO8	O15397	1037 aa	Known RBP	13.58	□□□□□ -0.24
NPIPB3-210	ENST00000542817	MSH5	O43196	834 aa		13.58	□□□□□ -0.24
NPIPB3-210	ENST00000542817	GPT	P24298	496 aa		13.58	□□□□□ -0.24
NPIPB3-210	ENST00000542817	CASP7	P55210	303 aa		13.58	□□□□□ -0.24
NPIPB3-210	ENST00000542817	NPM2	Q86SE8	214 aa	Known RBP	13.58	□□□□□ -0.24
NPIPB3-210	ENST00000542817	SYNE4	Q8N205	404 aa		13.58	□□□□□ -0.24
NPIPB3-210	ENST00000542817	NLGN1	Q8N2Q7	840 aa		13.58	□□□□□ -0.24
NPIPB3-210	ENST00000542817	TMEM57	Q8N5G2	664 aa		13.58	□□□□□ -0.24
NPIPB3-210	ENST00000542817	CLUAP1	Q96AJ1	413 aa		13.58	□□□□□ -0.24
NPIPB3-210	ENST00000542817	ANKRD36C	Q5JPF3	1778 aa		13.58	□□□□□ -0.24
NPIPB3-210	ENST00000542817	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.57	□□□□□ -0.24
NPIPB3-210	ENST00000542817	NTSR2	O95665	410 aa		13.57	□□□□□ -0.24
NPIPB3-210	ENST00000542817	MMP10	P09238	476 aa		13.57	□□□□□ -0.24
NPIPB3-210	ENST00000542817	LINS1	Q8NG48	757 aa		13.57	□□□□□ -0.24
NPIPB3-210	ENST00000542817	MTFR1L	Q9H019	292 aa		13.57	□□□□□ -0.24
NPIPB3-210	ENST00000542817	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.57	□□□□□ -0.24
NPIPB3-210	ENST00000542817	NRXN2	Q9P2S2	1712 aa		13.56	□□□□□ -0.24
NPIPB3-210	ENST00000542817	GCKR	Q14397	625 aa		13.56	□□□□□ -0.24
NPIPB3-210	ENST00000542817	HSP90AB3P	Q58FF7	597 aa		13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms