RNA–Protein interactions for RNA: ENST00000538266.5

SNHG1-208, Transcript of small nucleolar RNA host gene 1, human

TSL 3 BASIC

Gene SNHG1, Length 347 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-208	ENST00000538266	TRAF7	Q6Q0C0	670 aa		6.25	□□□□□ -1.41
SNHG1-208	ENST00000538266	DEPDC4	Q8N2C3	294 aa		6.25	□□□□□ -1.41
SNHG1-208	ENST00000538266	ZNF784	Q8NCA9	323 aa	Predicted RBP	6.25	□□□□□ -1.41
SNHG1-208	ENST00000538266	SIRT1	Q96EB6	747 aa		6.25	□□□□□ -1.41
SNHG1-208	ENST00000538266	CCDC97	Q96F63	343 aa	Predicted RBP	6.25	□□□□□ -1.41
SNHG1-208	ENST00000538266	NLRP1	Q9C000	1473 aa		6.25	□□□□□ -1.41
SNHG1-208	ENST00000538266	LILRA1	O75019	489 aa		6.24	□□□□□ -1.41
SNHG1-208	ENST00000538266	MYC	P01106	439 aa	Predicted RBP	6.24	□□□□□ -1.41
SNHG1-208	ENST00000538266	RFX1	P22670	979 aa		6.24	□□□□□ -1.41
SNHG1-208	ENST00000538266	SMCP	P49901	116 aa	Predicted RBP	6.24	□□□□□ -1.41
SNHG1-208	ENST00000538266	CBLB	Q13191	982 aa		6.24	□□□□□ -1.41
SNHG1-208	ENST00000538266	TRPM2	O94759	1503 aa		6.24	□□□□□ -1.41
SNHG1-208	ENST00000538266	CCDC144A	A2RUR9	1427 aa		6.24	□□□□□ -1.41
SNHG1-208	ENST00000538266	NOS1	P29475	1434 aa		6.24	□□□□□ -1.41
SNHG1-208	ENST00000538266	SETD1B	Q9UPS6	1966 aa	Known RBP	6.24	□□□□□ -1.41
SNHG1-208	ENST00000538266	ZNF142	P52746	1687 aa	Predicted RBP	6.23	□□□□□ -1.41
SNHG1-208	ENST00000538266	SYNM	O15061	1565 aa		6.23	□□□□□ -1.41
SNHG1-208	ENST00000538266	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	6.23	□□□□□ -1.41
SNHG1-208	ENST00000538266	USP17L5	A8MUK1	530 aa		6.23	□□□□□ -1.41
SNHG1-208	ENST00000538266	SCTR	P47872	440 aa		6.23	□□□□□ -1.41
SNHG1-208	ENST00000538266	ERVK-9	P63128	1117 aa		6.23	□□□□□ -1.41
SNHG1-208	ENST00000538266	NCOA4	Q13772	614 aa		6.23	□□□□□ -1.41
SNHG1-208	ENST00000538266	EML3	Q32P44	896 aa		6.23	□□□□□ -1.41
SNHG1-208	ENST00000538266		Q6ZVU0	165 aa		6.23	□□□□□ -1.41
SNHG1-208	ENST00000538266	CCDC82	Q8N4S0	544 aa		6.23	□□□□□ -1.41
SNHG1-208	ENST00000538266	AAAS	Q9NRG9	546 aa		6.23	□□□□□ -1.41
SNHG1-208	ENST00000538266	SLC52A1	Q9NWF4	448 aa		6.23	□□□□□ -1.41
SNHG1-208	ENST00000538266	A2ML1	A8K2U0	1454 aa		6.22	□□□□□ -1.41
SNHG1-208	ENST00000538266	ST8SIA5	O15466	376 aa		6.22	□□□□□ -1.41
SNHG1-208	ENST00000538266	ARID3A	Q99856	593 aa		6.22	□□□□□ -1.41
SNHG1-208	ENST00000538266	MKRN1	Q9UHC7	482 aa	Known RBP	6.22	□□□□□ -1.41
SNHG1-208	ENST00000538266	MAFB	Q9Y5Q3	323 aa	Predicted RBP	6.22	□□□□□ -1.41
SNHG1-208	ENST00000538266	PTPRT	O14522	1441 aa		6.22	□□□□□ -1.41
SNHG1-208	ENST00000538266	UGGT1	Q9NYU2	1555 aa		6.22	□□□□□ -1.41
SNHG1-208	ENST00000538266	PIK3C2B	O00750	1634 aa		6.21	□□□□□ -1.41
SNHG1-208	ENST00000538266	CLTCL1	P53675	1640 aa		6.21	□□□□□ -1.41
SNHG1-208	ENST00000538266	DHX57	Q6P158	1386 aa	Known RBP	6.21	□□□□□ -1.41
SNHG1-208	ENST00000538266	ADGRB3	O60242	1522 aa		6.21	□□□□□ -1.42
SNHG1-208	ENST00000538266	KDM5A	P29375	1690 aa	Known RBP	6.21	□□□□□ -1.42
SNHG1-208	ENST00000538266	USP17L3	A6NCW0	530 aa		6.21	□□□□□ -1.42
SNHG1-208	ENST00000538266	USP17L4	A6NCW7	530 aa		6.21	□□□□□ -1.42
SNHG1-208	ENST00000538266	UPP2	O95045	317 aa		6.21	□□□□□ -1.42
SNHG1-208	ENST00000538266	USP17L2	Q6R6M4	530 aa		6.21	□□□□□ -1.42
SNHG1-208	ENST00000538266	USP17L1	Q7RTZ2	530 aa		6.21	□□□□□ -1.42
SNHG1-208	ENST00000538266	PLEKHM2	Q8IWE5	1019 aa		6.21	□□□□□ -1.42
SNHG1-208	ENST00000538266	CRIPAK	Q8N1N5	446 aa		6.21	□□□□□ -1.42
SNHG1-208	ENST00000538266	AGBL1	Q96MI9	1066 aa		6.21	□□□□□ -1.42
SNHG1-208	ENST00000538266	OSBPL3	Q9H4L5	887 aa		6.21	□□□□□ -1.42
SNHG1-208	ENST00000538266	VRTN	Q9H8Y1	702 aa		6.21	□□□□□ -1.42
SNHG1-208	ENST00000538266	NOD1	Q9Y239	953 aa		6.21	□□□□□ -1.42
SNHG1-208	ENST00000538266	LMTK3	Q96Q04	1460 aa		6.21	□□□□□ -1.42
SNHG1-208	ENST00000538266	KIF1B	O60333	1816 aa		6.2	□□□□□ -1.42
SNHG1-208	ENST00000538266	ANKRD30B	Q9BXX2	1392 aa		6.2	□□□□□ -1.42
SNHG1-208	ENST00000538266	UBR1	Q8IWV7	1749 aa		6.2	□□□□□ -1.42
SNHG1-208	ENST00000538266	ATP5J2-PTCD1	G3V325	749 aa		6.2	□□□□□ -1.42
SNHG1-208	ENST00000538266	RELB	Q01201	579 aa		6.2	□□□□□ -1.42
SNHG1-208	ENST00000538266	IDI1	Q13907	227 aa		6.2	□□□□□ -1.42
SNHG1-208	ENST00000538266	CDCA8	Q53HL2	280 aa		6.2	□□□□□ -1.42
SNHG1-208	ENST00000538266	CFAP70	Q5T0N1	1121 aa		6.2	□□□□□ -1.42
SNHG1-208	ENST00000538266	THEMIS	Q8N1K5	641 aa	Predicted RBP	6.2	□□□□□ -1.42
SNHG1-208	ENST00000538266	CCER1	Q8TC90	406 aa	Predicted RBP	6.2	□□□□□ -1.42
SNHG1-208	ENST00000538266	TSEN34	Q9BSV6	310 aa	Known RBP	6.2	□□□□□ -1.42
SNHG1-208	ENST00000538266	ZNF395	Q9H8N7	513 aa	Predicted RBP	6.2	□□□□□ -1.42
SNHG1-208	ENST00000538266	DACH1	Q9UI36	760 aa		6.2	□□□□□ -1.42
SNHG1-208	ENST00000538266	PLA2R1	Q13018	1463 aa		6.2	□□□□□ -1.42
SNHG1-208	ENST00000538266	TMEM131L	A2VDJ0	1609 aa		6.19	□□□□□ -1.42
SNHG1-208	ENST00000538266	ADH1A	P07327	375 aa		6.19	□□□□□ -1.42
SNHG1-208	ENST00000538266	PTGIR	P43119	386 aa		6.19	□□□□□ -1.42
SNHG1-208	ENST00000538266	SCARF1	Q14162	830 aa		6.19	□□□□□ -1.42
SNHG1-208	ENST00000538266	ZNF326	Q5BKZ1	582 aa	Known RBP	6.19	□□□□□ -1.42
SNHG1-208	ENST00000538266	MRPL14	Q6P1L8	145 aa	Known RBP	6.19	□□□□□ -1.42
SNHG1-208	ENST00000538266	CYP2U1	Q7Z449	544 aa		6.19	□□□□□ -1.42
SNHG1-208	ENST00000538266	MEIOB	Q8N635	442 aa		6.19	□□□□□ -1.42
SNHG1-208	ENST00000538266	PPP1R15A	O75807	674 aa	Predicted RBP	6.18	□□□□□ -1.42
SNHG1-208	ENST00000538266	GNRH1	P01148	92 aa		6.18	□□□□□ -1.42
SNHG1-208	ENST00000538266	BMP2	P12643	396 aa		6.18	□□□□□ -1.42
SNHG1-208	ENST00000538266	BMP1	P13497	986 aa		6.18	□□□□□ -1.42
SNHG1-208	ENST00000538266	RASA1	P20936	1047 aa		6.18	□□□□□ -1.42
SNHG1-208	ENST00000538266	ZEB1	P37275	1124 aa	Predicted RBP	6.18	□□□□□ -1.42
SNHG1-208	ENST00000538266	HSPA2	P54652	639 aa		6.18	□□□□□ -1.42
SNHG1-208	ENST00000538266	C6orf118	Q5T5N4	469 aa		6.18	□□□□□ -1.42
SNHG1-208	ENST00000538266	TRIM50	Q86XT4	487 aa		6.18	□□□□□ -1.42
SNHG1-208	ENST00000538266	KDF1	Q8NAX2	398 aa	Predicted RBP	6.18	□□□□□ -1.42
SNHG1-208	ENST00000538266	ATP13A2	Q9NQ11	1180 aa		6.18	□□□□□ -1.42
SNHG1-208	ENST00000538266	PCDHGA11	Q9Y5H2	935 aa		6.18	□□□□□ -1.42
SNHG1-208	ENST00000538266	EID1	Q9Y6B2	187 aa		6.18	□□□□□ -1.42
SNHG1-208	ENST00000538266	CLSPN	Q9HAW4	1339 aa		6.18	□□□□□ -1.42
SNHG1-208	ENST00000538266	MYO5B	Q9ULV0	1848 aa		6.18	□□□□□ -1.42
SNHG1-208	ENST00000538266	TMEM2	Q9UHN6	1383 aa		6.18	□□□□□ -1.42
SNHG1-208	ENST00000538266	POLR1A	O95602	1720 aa	Predicted RBP	6.17	□□□□□ -1.42
SNHG1-208	ENST00000538266		A0A1W2PRU2	124 aa		6.17	□□□□□ -1.42
SNHG1-208	ENST00000538266	ZBTB7B	O15156	539 aa	Predicted RBP	6.17	□□□□□ -1.42
SNHG1-208	ENST00000538266	ATP1A2	P50993	1020 aa		6.17	□□□□□ -1.42
SNHG1-208	ENST00000538266	GTF2I	P78347	998 aa		6.17	□□□□□ -1.42
SNHG1-208	ENST00000538266	PSME1	Q06323	249 aa		6.17	□□□□□ -1.42
SNHG1-208	ENST00000538266	NEUROD1	Q13562	356 aa		6.17	□□□□□ -1.42
SNHG1-208	ENST00000538266	RGL3	Q3MIN7	710 aa		6.17	□□□□□ -1.42
SNHG1-208	ENST00000538266	LARP1	Q6PKG0	1096 aa	Known RBP	6.17	□□□□□ -1.42
SNHG1-208	ENST00000538266	TRIM46	Q7Z4K8	759 aa		6.17	□□□□□ -1.42
SNHG1-208	ENST00000538266	ANKLE2	Q86XL3	938 aa		6.17	□□□□□ -1.42

Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms