RNA–Protein interactions for RNA: ENST00000522911.5

SDC2-207, Transcript of syndecan 2, humanhuman

TSL 3 BASIC

Gene SDC2, Length 677 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-207ENST00000522911 USP16Q9Y5T5 823 aa12.56□□□□□ -0.4
SDC2-207ENST00000522911 COL11A2P13942 1736 aaPredicted RBP12.56□□□□□ -0.4
SDC2-207ENST00000522911 DICER1Q9UPY3 1922 aaKnown RBP12.55□□□□□ -0.4
SDC2-207ENST00000522911 KCNQ3O43525 872 aa12.55□□□□□ -0.4
SDC2-207ENST00000522911 PPP2R1AP30153 589 aa12.55□□□□□ -0.4
SDC2-207ENST00000522911 C7orf43Q8WVR3 580 aa12.55□□□□□ -0.4
SDC2-207ENST00000522911 RTF1Q92541 710 aaKnown RBP12.55□□□□□ -0.4
SDC2-207ENST00000522911 MASTLQ96GX5 879 aa12.55□□□□□ -0.4
SDC2-207ENST00000522911 ARFGEF2Q9Y6D5 1785 aa12.55□□□□□ -0.4
SDC2-207ENST00000522911 ZNF622Q969S3 477 aaKnown RBP eCLIP12.54□□□□□ -0.4
SDC2-207ENST00000522911 TAOK3Q9H2K8 898 aa12.54□□□□□ -0.4
SDC2-207ENST00000522911 C21orf2O43822 256 aa12.53□□□□□ -0.4
SDC2-207ENST00000522911 U2AF1L5P0DN76 240 aaPredicted RBP12.53□□□□□ -0.4
SDC2-207ENST00000522911 U2AF1Q01081 240 aaKnown RBP eCLIP12.53□□□□□ -0.4
SDC2-207ENST00000522911 TAF7Q15545 349 aaPredicted RBP12.53□□□□□ -0.4
SDC2-207ENST00000522911 ERFEQ4G0M1 354 aa12.53□□□□□ -0.4
SDC2-207ENST00000522911 PRPF40BQ6NWY9 871 aaKnown RBP12.53□□□□□ -0.4
SDC2-207ENST00000522911 NBPF26B4DH59 902 aa12.52□□□□□ -0.41
SDC2-207ENST00000522911 NPR1P16066 1061 aa12.52□□□□□ -0.41
SDC2-207ENST00000522911 NBPF10Q6P3W6 841 aaKnown RBP12.52□□□□□ -0.41
SDC2-207ENST00000522911 TPTE2Q6XPS3 522 aa12.52□□□□□ -0.41
SDC2-207ENST00000522911 NBPF15Q8N660 670 aa12.52□□□□□ -0.41
SDC2-207ENST00000522911 L3MBTL3Q96JM7 780 aaPredicted RBP12.52□□□□□ -0.41
SDC2-207ENST00000522911 ZNF330Q9Y3S2 320 aaPredicted RBP12.52□□□□□ -0.41
SDC2-207ENST00000522911 RIC1Q4ADV7 1423 aa12.52□□□□□ -0.41
SDC2-207ENST00000522911 ERVV-1B6SEH8 477 aa12.51□□□□□ -0.41
SDC2-207ENST00000522911 HTRA3P83110 453 aa12.51□□□□□ -0.41
SDC2-207ENST00000522911 MCM10Q7L590 875 aa12.51□□□□□ -0.41
SDC2-207ENST00000522911 NBPF5PQ86XG9 351 aaPredicted RBP12.51□□□□□ -0.41
SDC2-207ENST00000522911 PNISRQ8TF01 805 aaKnown RBP12.51□□□□□ -0.41
SDC2-207ENST00000522911 IBTKQ9P2D0 1353 aaPredicted RBP12.51□□□□□ -0.41
SDC2-207ENST00000522911 SLX4Q8IY92 1834 aa12.51□□□□□ -0.41
SDC2-207ENST00000522911 CCDC88AQ3V6T2 1871 aa12.51□□□□□ -0.41
SDC2-207ENST00000522911 PRAMEF22A3QJZ6 481 aa12.5□□□□□ -0.41
SDC2-207ENST00000522911 CRY2Q49AN0 593 aa12.5□□□□□ -0.41
SDC2-207ENST00000522911 CCDC93Q567U6 631 aa12.5□□□□□ -0.41
SDC2-207ENST00000522911 SNED1Q8TER0 1413 aa12.5□□□□□ -0.41
SDC2-207ENST00000522911 IQCA1LA6NCM1 817 aa12.49□□□□□ -0.41
SDC2-207ENST00000522911 NPHP1O15259 732 aa12.49□□□□□ -0.41
SDC2-207ENST00000522911 ALDH1B1P30837 517 aa12.49□□□□□ -0.41
SDC2-207ENST00000522911 FKBP4Q02790 459 aaKnown RBP eCLIP12.49□□□□□ -0.417e-6■□□□□ 9.9
SDC2-207ENST00000522911 RTKN2Q8IZC4 609 aa12.49□□□□□ -0.41
SDC2-207ENST00000522911 PLEKHF1Q96S99 279 aa12.49□□□□□ -0.41
SDC2-207ENST00000522911 CREBZFQ9NS37 354 aa12.49□□□□□ -0.41
SDC2-207ENST00000522911 NIP7Q9Y221 180 aaKnown RBP eCLIP12.49□□□□□ -0.41
SDC2-207ENST00000522911 LAMB4A4D0S4 1761 aa12.48□□□□□ -0.41
SDC2-207ENST00000522911 ERBB4Q15303 1308 aa12.48□□□□□ -0.41
SDC2-207ENST00000522911 GRIPAP1Q4V328 841 aa12.48□□□□□ -0.41
SDC2-207ENST00000522911 CHADLQ6NUI6 762 aa12.48□□□□□ -0.41
SDC2-207ENST00000522911 CCDC24Q8N4L8 307 aa12.48□□□□□ -0.41
SDC2-207ENST00000522911 NYXQ9GZU5 481 aa12.48□□□□□ -0.41
SDC2-207ENST00000522911 SCN4AP35499 1836 aa12.47□□□□□ -0.41
SDC2-207ENST00000522911 DCTN1Q14203 1278 aa12.47□□□□□ -0.41
SDC2-207ENST00000522911 CC2D2BQ6DHV5 1058 aa12.47□□□□□ -0.41
SDC2-207ENST00000522911 PSMD1Q99460 953 aa12.47□□□□□ -0.41
SDC2-207ENST00000522911 PNNQ9H307 717 aaKnown RBP12.47□□□□□ -0.41
SDC2-207ENST00000522911 KDM3BQ7LBC6 1761 aa12.47□□□□□ -0.41
SDC2-207ENST00000522911 MAP3K15Q6ZN16 1313 aa12.46□□□□□ -0.41
SDC2-207ENST00000522911 PASKQ96RG2 1323 aa12.46□□□□□ -0.41
SDC2-207ENST00000522911 FZD9O00144 591 aa12.46□□□□□ -0.41
SDC2-207ENST00000522911 DDNO94850 711 aaPredicted RBP12.46□□□□□ -0.41
SDC2-207ENST00000522911 NEFMP07197 916 aa12.46□□□□□ -0.41
SDC2-207ENST00000522911 HOXA10P31260 410 aaPredicted RBP12.46□□□□□ -0.41
SDC2-207ENST00000522911 PIP4K2AP48426 406 aaPredicted RBP12.46□□□□□ -0.41
SDC2-207ENST00000522911 EIF4A1P60842 406 aaKnown RBP12.46□□□□□ -0.41
SDC2-207ENST00000522911 NFE2L2Q16236 605 aa12.46□□□□□ -0.41
SDC2-207ENST00000522911 HLFQ16534 295 aa12.46□□□□□ -0.41
SDC2-207ENST00000522911 COL13A1Q5TAT6 717 aaPredicted RBP12.46□□□□□ -0.41
SDC2-207ENST00000522911 LDHDQ86WU2 507 aa12.46□□□□□ -0.41
SDC2-207ENST00000522911 BABAM1Q9NWV8 329 aa12.46□□□□□ -0.41
SDC2-207ENST00000522911 TAF1DQ9H5J8 278 aaPredicted RBP12.45□□□□□ -0.42
SDC2-207ENST00000522911 ZNF219Q9P2Y4 722 aaPredicted RBP12.45□□□□□ -0.42
SDC2-207ENST00000522911 CNGB1Q14028 1251 aaPredicted RBP12.44□□□□□ -0.42
SDC2-207ENST00000522911 ADAMTSL1Q8N6G6 1762 aa12.43□□□□□ -0.42
SDC2-207ENST00000522911 ITGBL1O95965 494 aaPredicted RBP12.43□□□□□ -0.42
SDC2-207ENST00000522911 IARSP41252 1262 aaKnown RBP12.43□□□□□ -0.42
SDC2-207ENST00000522911 PNMA8AQ86V59 439 aaPredicted RBP12.43□□□□□ -0.42
SDC2-207ENST00000522911 ZNF34Q8IZ26 560 aa12.43□□□□□ -0.42
SDC2-207ENST00000522911 GPC2Q8N158 579 aa12.43□□□□□ -0.42
SDC2-207ENST00000522911 CNTNAP1P78357 1384 aa12.43□□□□□ -0.42
SDC2-207ENST00000522911 RNF123Q5XPI4 1314 aa12.42□□□□□ -0.42
SDC2-207ENST00000522911 POTEIP0CG38 1075 aa12.42□□□□□ -0.42
SDC2-207ENST00000522911 POTEJP0CG39 1038 aa12.42□□□□□ -0.42
SDC2-207ENST00000522911 HSPA1AP0DMV8 641 aaKnown RBP12.42□□□□□ -0.42
SDC2-207ENST00000522911 HSPA1BP0DMV9 641 aaKnown RBP12.42□□□□□ -0.42
SDC2-207ENST00000522911 GIGYF2Q6Y7W6 1299 aaKnown RBP12.42□□□□□ -0.42
SDC2-207ENST00000522911 LRP10Q7Z4F1 713 aa12.42□□□□□ -0.42
SDC2-207ENST00000522911 CRAMP1Q96RY5 1269 aa12.42□□□□□ -0.42
SDC2-207ENST00000522911 VPS33BQ9H267 617 aa12.42□□□□□ -0.42
SDC2-207ENST00000522911 ZNF277Q9NRM2 450 aaPredicted RBP12.42□□□□□ -0.42
SDC2-207ENST00000522911 MIS18AQ9NYP9 233 aa12.42□□□□□ -0.42
SDC2-207ENST00000522911 HACL1Q9UJ83 578 aa12.42□□□□□ -0.42
SDC2-207ENST00000522911 ABCC12Q96J65 1359 aa12.42□□□□□ -0.42
SDC2-207ENST00000522911 UBN2Q6ZU65 1347 aa12.41□□□□□ -0.42
SDC2-207ENST00000522911 DLG5Q8TDM6 1919 aa12.41□□□□□ -0.42
SDC2-207ENST00000522911 GTF2E1P29083 439 aaPredicted RBP12.41□□□□□ -0.42
SDC2-207ENST00000522911 CACNA1SQ13698 1873 aa12.41□□□□□ -0.42
SDC2-207ENST00000522911 PARP10Q53GL7 1025 aa12.41□□□□□ -0.42
SDC2-207ENST00000522911 KIF6Q6ZMV9 814 aa12.41□□□□□ -0.42
SDC2-207ENST00000522911 SYNE4Q8N205 404 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms