RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 BAG6P46379 1132 aa9.16□□□□□ -0.94
NUP54-204ENST00000506098 PIP4K2AP48426 406 aaPredicted RBP9.16□□□□□ -0.94
NUP54-204ENST00000506098 KCNQ4P56696 695 aa9.16□□□□□ -0.94
NUP54-204ENST00000506098 SF3B2Q13435 895 aaKnown RBP9.16□□□□□ -0.94
NUP54-204ENST00000506098 FKBP5Q13451 457 aaPredicted RBP9.16□□□□□ -0.94
NUP54-204ENST00000506098 ANKRD13DQ6ZTN6 518 aa9.16□□□□□ -0.94
NUP54-204ENST00000506098 COPS6Q7L5N1 327 aa9.16□□□□□ -0.94
NUP54-204ENST00000506098 DZIP1LQ8IYY4 767 aaKnown RBP9.16□□□□□ -0.94
NUP54-204ENST00000506098 XAGE3Q8WTP9 111 aa9.16□□□□□ -0.94
NUP54-204ENST00000506098 TNNQ9UQP3 1299 aa9.16□□□□□ -0.94
NUP54-204ENST00000506098 COL15A1P39059 1388 aa9.15□□□□□ -0.94
NUP54-204ENST00000506098 NRXN2Q9P2S2 1712 aa9.15□□□□□ -0.94
NUP54-204ENST00000506098 PI4KAP2A4QPH2 592 aa9.15□□□□□ -0.94
NUP54-204ENST00000506098 RGL2O15211 777 aa9.15□□□□□ -0.94
NUP54-204ENST00000506098 RLBP1P12271 317 aa9.15□□□□□ -0.94
NUP54-204ENST00000506098 CANXP27824 592 aaKnown RBP9.15□□□□□ -0.94
NUP54-204ENST00000506098 EN1Q05925 392 aaPredicted RBP9.15□□□□□ -0.94
NUP54-204ENST00000506098 EZH2Q15910 746 aaKnown RBP9.15□□□□□ -0.94
NUP54-204ENST00000506098 C20orf194Q5TEA3 1177 aa9.15□□□□□ -0.94
NUP54-204ENST00000506098 INTS3Q68E01 1043 aaKnown RBP9.15□□□□□ -0.94
NUP54-204ENST00000506098 PI4KAP1Q8N8J0 262 aa9.15□□□□□ -0.94
NUP54-204ENST00000506098 PLBD2Q8NHP8 589 aa9.15□□□□□ -0.94
NUP54-204ENST00000506098 MAP3K15Q6ZN16 1313 aa9.14□□□□□ -0.95
NUP54-204ENST00000506098 A0A087WZG4 1122 aa9.14□□□□□ -0.95
NUP54-204ENST00000506098 ERVV-1B6SEH8 477 aa9.14□□□□□ -0.95
NUP54-204ENST00000506098 AIMP1Q12904 312 aaKnown RBP9.14□□□□□ -0.95
NUP54-204ENST00000506098 TTLL7Q6ZT98 887 aa9.14□□□□□ -0.95
NUP54-204ENST00000506098 DNAAF4Q8WXU2 420 aa9.14□□□□□ -0.95
NUP54-204ENST00000506098 UPF1Q92900 1129 aaKnown RBP eCLIP9.14□□□□□ -0.95
NUP54-204ENST00000506098 AKT1S1Q96B36 256 aa9.14□□□□□ -0.95
NUP54-204ENST00000506098 ARXQ96QS3 562 aa9.14□□□□□ -0.95
NUP54-204ENST00000506098 METTL22Q9BUU2 404 aaPredicted RBP9.14□□□□□ -0.95
NUP54-204ENST00000506098 MAP3K2Q9Y2U5 619 aa9.14□□□□□ -0.95
NUP54-204ENST00000506098 RTCBQ9Y3I0 505 aaKnown RBP9.14□□□□□ -0.95
NUP54-204ENST00000506098 F6X3S4 739 aa9.13□□□□□ -0.95
NUP54-204ENST00000506098 SSFA2P28290 1259 aa9.13□□□□□ -0.95
NUP54-204ENST00000506098 CCT4P50991 539 aaKnown RBP9.13□□□□□ -0.95
NUP54-204ENST00000506098 MVPQ14764 893 aaKnown RBP9.13□□□□□ -0.95
NUP54-204ENST00000506098 BEND3Q5T5X7 828 aa9.13□□□□□ -0.95
NUP54-204ENST00000506098 ERICH6BQ5W0A0 696 aa9.13□□□□□ -0.95
NUP54-204ENST00000506098 GIGYF2Q6Y7W6 1299 aaKnown RBP9.13□□□□□ -0.95
NUP54-204ENST00000506098 RIC3Q7Z5B4 369 aa9.13□□□□□ -0.95
NUP54-204ENST00000506098 DZIP3Q86Y13 1208 aaKnown RBP9.13□□□□□ -0.95
NUP54-204ENST00000506098 FTSJ3Q8IY81 847 aaKnown RBP9.13□□□□□ -0.95
NUP54-204ENST00000506098 TMEM57Q8N5G2 664 aa9.13□□□□□ -0.95
NUP54-204ENST00000506098 PANK1Q8TE04 598 aa9.13□□□□□ -0.95
NUP54-204ENST00000506098 CLUAP1Q96AJ1 413 aa9.13□□□□□ -0.95
NUP54-204ENST00000506098 AK7Q96M32 723 aa9.13□□□□□ -0.95
NUP54-204ENST00000506098 TAF1P21675 1872 aa9.13□□□□□ -0.95
NUP54-204ENST00000506098 ANKRD31Q8N7Z5 1873 aa9.13□□□□□ -0.95
NUP54-204ENST00000506098 SPEF2Q9C093 1822 aa9.12□□□□□ -0.95
NUP54-204ENST00000506098 KIF13BQ9NQT8 1826 aa9.12□□□□□ -0.95
NUP54-204ENST00000506098 GNPATO15228 680 aa9.12□□□□□ -0.95
NUP54-204ENST00000506098 ALDH1L1O75891 902 aa9.12□□□□□ -0.95
NUP54-204ENST00000506098 CAMTA2O94983 1202 aa9.12□□□□□ -0.95
NUP54-204ENST00000506098 TRIM28Q13263 835 aaKnown RBP9.12□□□□□ -0.95
NUP54-204ENST00000506098 AAMPQ13685 434 aa9.12□□□□□ -0.95
NUP54-204ENST00000506098 CLEC4GQ6UXB4 293 aa9.12□□□□□ -0.95
NUP54-204ENST00000506098 KIF6Q6ZMV9 814 aa9.12□□□□□ -0.95
NUP54-204ENST00000506098 DEFB132Q7Z7B7 95 aa9.12□□□□□ -0.95
NUP54-204ENST00000506098 NPM2Q86SE8 214 aaKnown RBP9.12□□□□□ -0.95
NUP54-204ENST00000506098 AMIGO3Q86WK7 504 aa9.12□□□□□ -0.95
NUP54-204ENST00000506098 LINS1Q8NG48 757 aa9.12□□□□□ -0.95
NUP54-204ENST00000506098 NARFQ9UHQ1 456 aa9.12□□□□□ -0.95
NUP54-204ENST00000506098 DDX19BQ9UMR2 479 aa9.12□□□□□ -0.95
NUP54-204ENST00000506098 CACNA1SQ13698 1873 aa9.11□□□□□ -0.95
NUP54-204ENST00000506098 ZBTB7BO15156 539 aaPredicted RBP9.11□□□□□ -0.95
NUP54-204ENST00000506098 IGKV5-2P06315 115 aa9.11□□□□□ -0.95
NUP54-204ENST00000506098 NEFLP07196 543 aa9.11□□□□□ -0.95
NUP54-204ENST00000506098 TCIRG1Q13488 830 aa9.11□□□□□ -0.95
NUP54-204ENST00000506098 ZNF827Q17R98 1081 aa9.11□□□□□ -0.95
NUP54-204ENST00000506098 HSP90AB3PQ58FF7 597 aa9.11□□□□□ -0.95
NUP54-204ENST00000506098 TRAPPC3LQ5T215 181 aa9.11□□□□□ -0.95
NUP54-204ENST00000506098 ILDR2Q71H61 639 aa9.11□□□□□ -0.95
NUP54-204ENST00000506098 FLAD1Q8NFF5 587 aa9.11□□□□□ -0.95
NUP54-204ENST00000506098 ARHGEF1Q92888 912 aaKnown RBP9.11□□□□□ -0.95
NUP54-204ENST00000506098 CRBNQ96SW2 442 aa9.11□□□□□ -0.95
NUP54-204ENST00000506098 ISCA1Q9BUE6 129 aa9.11□□□□□ -0.95
NUP54-204ENST00000506098 SRCIN1Q9C0H9 1055 aa9.11□□□□□ -0.95
NUP54-204ENST00000506098 RNF216Q9NWF9 866 aaPredicted RBP9.11□□□□□ -0.95
NUP54-204ENST00000506098 TBC1D2BQ9UPU7 963 aa9.11□□□□□ -0.95
NUP54-204ENST00000506098 COG6Q9Y2V7 657 aa9.11□□□□□ -0.95
NUP54-204ENST00000506098 UTYO14607 1347 aa9.1□□□□□ -0.95
NUP54-204ENST00000506098 USP42Q9H9J4 1324 aaKnown RBP9.1□□□□□ -0.95
NUP54-204ENST00000506098 A0A1B0GUL6 1792 aa9.1□□□□□ -0.95
NUP54-204ENST00000506098 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.1□□□□□ -0.95
NUP54-204ENST00000506098 NEXNQ0ZGT2 675 aa9.1□□□□□ -0.95
NUP54-204ENST00000506098 SLC15A2Q16348 729 aa9.1□□□□□ -0.95
NUP54-204ENST00000506098 HLFQ16534 295 aa9.1□□□□□ -0.95
NUP54-204ENST00000506098 SLC4A10Q6U841 1118 aa9.1□□□□□ -0.95
NUP54-204ENST00000506098 ZNF34Q8IZ26 560 aa9.1□□□□□ -0.95
NUP54-204ENST00000506098 CCDC191Q8NCU4 936 aa9.1□□□□□ -0.95
NUP54-204ENST00000506098 MYD88Q99836 296 aa9.1□□□□□ -0.95
NUP54-204ENST00000506098 CHMP4BQ9H444 224 aaKnown RBP9.1□□□□□ -0.95
NUP54-204ENST00000506098 ZBTB3Q9H5J0 574 aa9.1□□□□□ -0.95
NUP54-204ENST00000506098 ZNF330Q9Y3S2 320 aaPredicted RBP9.1□□□□□ -0.95
NUP54-204ENST00000506098 NEURL1BA8MQ27 555 aa9.09□□□□□ -0.95
NUP54-204ENST00000506098 ZPR1O75312 459 aa9.09□□□□□ -0.95
NUP54-204ENST00000506098 RFC4P35249 363 aa9.09□□□□□ -0.95
NUP54-204ENST00000506098 IRX6P78412 446 aaPredicted RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms