RNA–Protein interactions for RNA: ENST00000486665.5

HDAC6-229, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-229ENST00000486665 CANXP27824 592 aaKnown RBP16.38■□□□□ 0.21
HDAC6-229ENST00000486665 LRP10Q7Z4F1 713 aa16.38■□□□□ 0.21
HDAC6-229ENST00000486665 DDX21Q9NR30 783 aaKnown RBP eCLIP16.38■□□□□ 0.21
HDAC6-229ENST00000486665 SMC4Q9NTJ3 1288 aa16.38■□□□□ 0.21
HDAC6-229ENST00000486665 CCDC87Q9NVE4 849 aa16.38■□□□□ 0.21
HDAC6-229ENST00000486665 DBF4Q9UBU7 674 aaPredicted RBP16.38■□□□□ 0.21
HDAC6-229ENST00000486665 ZBTB1Q9Y2K1 713 aa16.38■□□□□ 0.21
HDAC6-229ENST00000486665 HMGB2P26583 209 aaKnown RBP16.37■□□□□ 0.21
HDAC6-229ENST00000486665 RC3H1Q5TC82 1133 aaKnown RBP16.37■□□□□ 0.21
HDAC6-229ENST00000486665 STK31Q9BXU1 1019 aa16.37■□□□□ 0.21
HDAC6-229ENST00000486665 CHMP4AQ9BY43 222 aa16.37■□□□□ 0.21
HDAC6-229ENST00000486665 GPBP1L1Q9HC44 474 aaPredicted RBP16.37■□□□□ 0.21
HDAC6-229ENST00000486665 BRCA1P38398 1863 aaKnown RBP16.37■□□□□ 0.21
HDAC6-229ENST00000486665 PHAXQ9H814 394 aaKnown RBP16.36■□□□□ 0.21
HDAC6-229ENST00000486665 ERBB4Q15303 1308 aa16.36■□□□□ 0.21
HDAC6-229ENST00000486665 CNTNAP4Q9C0A0 1308 aa16.36■□□□□ 0.21
HDAC6-229ENST00000486665 C10orf71Q711Q0 1435 aa16.36■□□□□ 0.21
HDAC6-229ENST00000486665 BRPF1P55201 1214 aaPredicted RBP16.35■□□□□ 0.21
HDAC6-229ENST00000486665 ARHGEF1Q92888 912 aaKnown RBP16.35■□□□□ 0.21
HDAC6-229ENST00000486665 HYPKQ9NX55 129 aa16.35■□□□□ 0.21
HDAC6-229ENST00000486665 NOB1Q9ULX3 412 aaKnown RBP16.35■□□□□ 0.21
HDAC6-229ENST00000486665 LAMB4A4D0S4 1761 aa16.35■□□□□ 0.21
HDAC6-229ENST00000486665 A0A0G2JLW4 131 aa16.34■□□□□ 0.21
HDAC6-229ENST00000486665 EIF5P55010 431 aaKnown RBP16.34■□□□□ 0.21
HDAC6-229ENST00000486665 XAGE3Q8WTP9 111 aa16.34■□□□□ 0.21
HDAC6-229ENST00000486665 RPS6KA4O75676 772 aa16.33■□□□□ 0.2
HDAC6-229ENST00000486665 GYS1P13807 737 aa16.33■□□□□ 0.2
HDAC6-229ENST00000486665 IL6STP40189 918 aaPredicted RBP16.33■□□□□ 0.2
HDAC6-229ENST00000486665 TRAPPC3LQ5T215 181 aa16.33■□□□□ 0.2
HDAC6-229ENST00000486665 COPS6Q7L5N1 327 aa16.33■□□□□ 0.2
HDAC6-229ENST00000486665 RTCBQ9Y3I0 505 aaKnown RBP16.33■□□□□ 0.2
HDAC6-229ENST00000486665 SUPT16HQ9Y5B9 1047 aaKnown RBP16.33■□□□□ 0.2
HDAC6-229ENST00000486665 KIF3CO14782 793 aa16.32■□□□□ 0.2
HDAC6-229ENST00000486665 PLIN1O60240 522 aa16.32■□□□□ 0.2
HDAC6-229ENST00000486665 AIMP1Q12904 312 aaKnown RBP16.32■□□□□ 0.2
HDAC6-229ENST00000486665 FLIIQ13045 1269 aa16.32■□□□□ 0.2
HDAC6-229ENST00000486665 TTLL7Q6ZT98 887 aa16.32■□□□□ 0.2
HDAC6-229ENST00000486665 FRAT1Q92837 279 aaPredicted RBP16.32■□□□□ 0.2
HDAC6-229ENST00000486665 ZNF330Q9Y3S2 320 aaPredicted RBP16.32■□□□□ 0.2
HDAC6-229ENST00000486665 DPEP1P16444 411 aa16.31■□□□□ 0.2
HDAC6-229ENST00000486665 TNNQ9UQP3 1299 aa16.31■□□□□ 0.2
HDAC6-229ENST00000486665 HSPA6P17066 643 aa16.3■□□□□ 0.2
HDAC6-229ENST00000486665 SRP68Q9UHB9 627 aaKnown RBP16.3■□□□□ 0.2
HDAC6-229ENST00000486665 BCS1LQ9Y276 419 aa16.3■□□□□ 0.2
HDAC6-229ENST00000486665 KCNA3P22001 575 aa16.29■□□□□ 0.2
HDAC6-229ENST00000486665 NLGN1Q8N2Q7 840 aa16.29■□□□□ 0.2
HDAC6-229ENST00000486665 TBC1D2BQ9UPU7 963 aa16.29■□□□□ 0.2
HDAC6-229ENST00000486665 ARFGEF1Q9Y6D6 1849 aa16.29■□□□□ 0.2
HDAC6-229ENST00000486665 RNF123Q5XPI4 1314 aa16.28■□□□□ 0.2
HDAC6-229ENST00000486665 ADRA2BP18089 450 aa16.28■□□□□ 0.2
HDAC6-229ENST00000486665 RRP1P56182 461 aaKnown RBP16.28■□□□□ 0.2
HDAC6-229ENST00000486665 TGFB2P61812 414 aa16.28■□□□□ 0.2
HDAC6-229ENST00000486665 FKBP5Q13451 457 aaPredicted RBP16.28■□□□□ 0.2
HDAC6-229ENST00000486665 ZKSCAN2Q63HK3 967 aa16.28■□□□□ 0.2
HDAC6-229ENST00000486665 ARHGAP45Q92619 1136 aa16.28■□□□□ 0.2
HDAC6-229ENST00000486665 PTPRCP08575 1304 aa16.27■□□□□ 0.2
HDAC6-229ENST00000486665 KIF16BQ96L93 1317 aa16.27■□□□□ 0.2
HDAC6-229ENST00000486665 PI4KAP2A4QPH2 592 aa16.27■□□□□ 0.2
HDAC6-229ENST00000486665 F6X3S4 739 aa16.27■□□□□ 0.2
HDAC6-229ENST00000486665 IPO8O15397 1037 aaKnown RBP16.27■□□□□ 0.2
HDAC6-229ENST00000486665 RFC4P35249 363 aa16.27■□□□□ 0.2
HDAC6-229ENST00000486665 DDR1Q08345 913 aa16.27■□□□□ 0.2
HDAC6-229ENST00000486665 KSR2Q6VAB6 950 aa16.27■□□□□ 0.2
HDAC6-229ENST00000486665 ANKRD13DQ6ZTN6 518 aa16.27■□□□□ 0.2
HDAC6-229ENST00000486665 DZIP3Q86Y13 1208 aaKnown RBP16.27■□□□□ 0.2
HDAC6-229ENST00000486665 PI4KAP1Q8N8J0 262 aa16.27■□□□□ 0.2
HDAC6-229ENST00000486665 COL15A1P39059 1388 aa16.26■□□□□ 0.19
HDAC6-229ENST00000486665 A0A087WZG4 1122 aa16.26■□□□□ 0.19
HDAC6-229ENST00000486665 TRIM27P14373 513 aa16.26■□□□□ 0.19
HDAC6-229ENST00000486665 FKBP8Q14318 412 aa16.26■□□□□ 0.19
HDAC6-229ENST00000486665 C20orf194Q5TEA3 1177 aa16.26■□□□□ 0.19
HDAC6-229ENST00000486665 ATF7IPQ6VMQ6 1270 aa16.26■□□□□ 0.19
HDAC6-229ENST00000486665 ZBTB3Q9H5J0 574 aa16.26■□□□□ 0.19
HDAC6-229ENST00000486665 MAP3K15Q6ZN16 1313 aa16.25■□□□□ 0.19
HDAC6-229ENST00000486665 CAMTA2O94983 1202 aa16.25■□□□□ 0.19
HDAC6-229ENST00000486665 DDX58O95786 925 aaKnown RBP16.25■□□□□ 0.19
HDAC6-229ENST00000486665 HLFQ16534 295 aa16.25■□□□□ 0.19
HDAC6-229ENST00000486665 KIF6Q6ZMV9 814 aa16.25■□□□□ 0.19
HDAC6-229ENST00000486665 ARHGAP27Q6ZUM4 889 aa16.25■□□□□ 0.19
HDAC6-229ENST00000486665 RIC3Q7Z5B4 369 aa16.25■□□□□ 0.19
HDAC6-229ENST00000486665 NPM2Q86SE8 214 aaKnown RBP16.25■□□□□ 0.19
HDAC6-229ENST00000486665 PLBD2Q8NHP8 589 aa16.25■□□□□ 0.19
HDAC6-229ENST00000486665 CLUAP1Q96AJ1 413 aa16.25■□□□□ 0.19
HDAC6-229ENST00000486665 API5Q9BZZ5 524 aaKnown RBP16.25■□□□□ 0.19
HDAC6-229ENST00000486665 MAP3K2Q9Y2U5 619 aa16.25■□□□□ 0.19
HDAC6-229ENST00000486665 PARP3Q9Y6F1 533 aa16.25■□□□□ 0.19
HDAC6-229ENST00000486665 USP42Q9H9J4 1324 aaKnown RBP16.24■□□□□ 0.19
HDAC6-229ENST00000486665 RLBP1P12271 317 aa16.24■□□□□ 0.19
HDAC6-229ENST00000486665 IFFO2Q5TF58 517 aa16.24■□□□□ 0.19
HDAC6-229ENST00000486665 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.24■□□□□ 0.19
HDAC6-229ENST00000486665 PANK1Q8TE04 598 aa16.24■□□□□ 0.19
HDAC6-229ENST00000486665 NMRK2Q9NPI5 230 aa16.24■□□□□ 0.19
HDAC6-229ENST00000486665 NARFQ9UHQ1 456 aa16.24■□□□□ 0.19
HDAC6-229ENST00000486665 AFDNP55196 1824 aaKnown RBP16.24■□□□□ 0.19
HDAC6-229ENST00000486665 ERVV-1B6SEH8 477 aa16.23■□□□□ 0.19
HDAC6-229ENST00000486665 USPL1Q5W0Q7 1092 aa16.23■□□□□ 0.19
HDAC6-229ENST00000486665 DNAAF4Q8WXU2 420 aa16.23■□□□□ 0.19
HDAC6-229ENST00000486665 BCL2L12Q9HB09 334 aa16.23■□□□□ 0.19
HDAC6-229ENST00000486665 CACNA1FO60840 1977 aa16.22■□□□□ 0.19
HDAC6-229ENST00000486665 CHRNA5P30532 468 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 136 ms