RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 GDF10P55107 478 aa7□□□□□ -1.29
VPS13A-207ENST00000419472 PLEKHG6Q3KR16 790 aa7□□□□□ -1.29
VPS13A-207ENST00000419472 MYH16Q9H6N6 1097 aa7□□□□□ -1.29
VPS13A-207ENST00000419472 PCDHB3Q9Y5E6 796 aa7□□□□□ -1.29
VPS13A-207ENST00000419472 MRVI1Q9Y6F6 885 aa7□□□□□ -1.29
VPS13A-207ENST00000419472 CEP164Q9UPV0 1460 aa6.99□□□□□ -1.29
VPS13A-207ENST00000419472 CBLBQ13191 982 aa6.99□□□□□ -1.29
VPS13A-207ENST00000419472 NFE2L2Q16236 605 aa6.99□□□□□ -1.29
VPS13A-207ENST00000419472 ETFBKMTQ8IXQ9 262 aa6.99□□□□□ -1.29
VPS13A-207ENST00000419472 LMTK3Q96Q04 1460 aa6.99□□□□□ -1.29
VPS13A-207ENST00000419472 CENPBP07199 599 aaPredicted RBP6.99□□□□□ -1.29
VPS13A-207ENST00000419472 ITGAEP38570 1179 aa6.99□□□□□ -1.29
VPS13A-207ENST00000419472 PTPN12Q05209 780 aaKnown RBP6.99□□□□□ -1.29
VPS13A-207ENST00000419472 MSS51Q4VC12 460 aa6.99□□□□□ -1.29
VPS13A-207ENST00000419472 SPSB2Q99619 263 aa6.99□□□□□ -1.29
VPS13A-207ENST00000419472 C2orf49Q9BVC5 232 aaPredicted RBP6.99□□□□□ -1.29
VPS13A-207ENST00000419472 IRF2BPLQ9H1B7 796 aa6.99□□□□□ -1.29
VPS13A-207ENST00000419472 CCDC85CA6NKD9 419 aa6.98□□□□□ -1.29
VPS13A-207ENST00000419472 F6X3S4 739 aa6.98□□□□□ -1.29
VPS13A-207ENST00000419472 EIF1AYO14602 144 aaKnown RBP6.98□□□□□ -1.29
VPS13A-207ENST00000419472 UBE2Q2Q8WVN8 375 aa6.98□□□□□ -1.29
VPS13A-207ENST00000419472 EDEM1Q92611 657 aa6.98□□□□□ -1.29
VPS13A-207ENST00000419472 GPRASP2Q96D09 838 aa6.98□□□□□ -1.29
VPS13A-207ENST00000419472 LRCH3Q96II8 777 aa6.98□□□□□ -1.29
VPS13A-207ENST00000419472 CSRNP1Q96S65 589 aa6.98□□□□□ -1.29
VPS13A-207ENST00000419472 OSBPL7Q9BZF2 842 aa6.98□□□□□ -1.29
VPS13A-207ENST00000419472 MYCP01106 439 aaPredicted RBP6.98□□□□□ -1.29
VPS13A-207ENST00000419472 IRS1P35568 1242 aa6.98□□□□□ -1.29
VPS13A-207ENST00000419472 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.98□□□□□ -1.29
VPS13A-207ENST00000419472 SRPK1Q96SB4 655 aaKnown RBP6.98□□□□□ -1.29
VPS13A-207ENST00000419472 IRX6P78412 446 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-207ENST00000419472 SH3PXD2AQ5TCZ1 1133 aa6.97□□□□□ -1.29
VPS13A-207ENST00000419472 CKAP2LQ8IYA6 745 aa6.97□□□□□ -1.29
VPS13A-207ENST00000419472 ETNK1Q9HBU6 452 aa6.97□□□□□ -1.29
VPS13A-207ENST00000419472 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-207ENST00000419472 USP3Q9Y6I4 520 aa6.97□□□□□ -1.29
VPS13A-207ENST00000419472 CCDC88BA6NC98 1476 aa6.97□□□□□ -1.29
VPS13A-207ENST00000419472 FANCD2Q9BXW9 1451 aa6.97□□□□□ -1.29
VPS13A-207ENST00000419472 NR1I2O75469 434 aa6.97□□□□□ -1.29
VPS13A-207ENST00000419472 ZCRB1Q8TBF4 217 aaKnown RBP6.97□□□□□ -1.29
VPS13A-207ENST00000419472 NGLY1Q96IV0 654 aa6.97□□□□□ -1.29
VPS13A-207ENST00000419472 FAM221BA6H8Z2 402 aa6.97□□□□□ -1.29
VPS13A-207ENST00000419472 ARHGAP33O14559 1287 aa6.97□□□□□ -1.29
VPS13A-207ENST00000419472 ENPP3O14638 875 aa6.97□□□□□ -1.29
VPS13A-207ENST00000419472 TLL1O43897 1013 aa6.97□□□□□ -1.29
VPS13A-207ENST00000419472 EIF4BP23588 611 aaKnown RBP6.97□□□□□ -1.29
VPS13A-207ENST00000419472 ETFBP38117 255 aa6.97□□□□□ -1.29
VPS13A-207ENST00000419472 AMPD3Q01432 767 aa6.97□□□□□ -1.29
VPS13A-207ENST00000419472 BPHLQ86WA6 291 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-207ENST00000419472 SLC9A9Q8IVB4 645 aa6.97□□□□□ -1.29
VPS13A-207ENST00000419472 OSBPL3Q9H4L5 887 aa6.97□□□□□ -1.29
VPS13A-207ENST00000419472 CCDC194A0A1B0GVG4 234 aa6.96□□□□□ -1.3
VPS13A-207ENST00000419472 BHMG1C9JSJ3 638 aaPredicted RBP6.96□□□□□ -1.3
VPS13A-207ENST00000419472 CLSTN1O94985 981 aa6.96□□□□□ -1.3
VPS13A-207ENST00000419472 PDGFAP04085 211 aa6.96□□□□□ -1.3
VPS13A-207ENST00000419472 HOXB1P14653 301 aaPredicted RBP6.96□□□□□ -1.3
VPS13A-207ENST00000419472 LAPTM4BQ86VI4 370 aa6.96□□□□□ -1.3
VPS13A-207ENST00000419472 SLC4A5Q9BY07 1137 aa6.96□□□□□ -1.3
VPS13A-207ENST00000419472 DDX56Q9NY93 547 aaKnown RBP6.96□□□□□ -1.3
VPS13A-207ENST00000419472 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.96□□□□□ -1.3
VPS13A-207ENST00000419472 ERVH48-1M5A8F1 160 aa6.96□□□□□ -1.3
VPS13A-207ENST00000419472 USPL1Q5W0Q7 1092 aa6.96□□□□□ -1.3
VPS13A-207ENST00000419472 DNAJC6O75061 913 aa6.95□□□□□ -1.3
VPS13A-207ENST00000419472 INHAP05111 366 aa6.95□□□□□ -1.3
VPS13A-207ENST00000419472 ABCC8Q09428 1581 aa6.95□□□□□ -1.3
VPS13A-207ENST00000419472 GORABQ5T7V8 394 aa6.95□□□□□ -1.3
VPS13A-207ENST00000419472 ZNF511Q8NB15 262 aa6.95□□□□□ -1.3
VPS13A-207ENST00000419472 FBF1Q8TES7 1133 aa6.95□□□□□ -1.3
VPS13A-207ENST00000419472 BRINP2Q9C0B6 783 aa6.95□□□□□ -1.3
VPS13A-207ENST00000419472 SPC25Q9HBM1 224 aa6.95□□□□□ -1.3
VPS13A-207ENST00000419472 USP31Q70CQ4 1352 aa6.95□□□□□ -1.3
VPS13A-207ENST00000419472 COPS2P61201 443 aa6.95□□□□□ -1.3
VPS13A-207ENST00000419472 CCDC181Q5TID7 509 aa6.95□□□□□ -1.3
VPS13A-207ENST00000419472 ABTB2Q8N961 1025 aa6.95□□□□□ -1.3
VPS13A-207ENST00000419472 EPS8L3Q8TE67 593 aaKnown RBP6.95□□□□□ -1.3
VPS13A-207ENST00000419472 SPG7Q9UQ90 795 aa6.95□□□□□ -1.3
VPS13A-207ENST00000419472 SSBP05455 408 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS13A-207ENST00000419472 C8orf34Q49A92 452 aa6.94□□□□□ -1.3
VPS13A-207ENST00000419472 NBPF3Q9H094 633 aa6.94□□□□□ -1.3
VPS13A-207ENST00000419472 GGNBP2Q9H3C7 697 aa6.94□□□□□ -1.3
VPS13A-207ENST00000419472 SNTG2Q9NY99 539 aa6.94□□□□□ -1.3
VPS13A-207ENST00000419472 PCDH10Q9P2E7 1040 aa6.94□□□□□ -1.3
VPS13A-207ENST00000419472 ZAP70P43403 619 aa6.94□□□□□ -1.3
VPS13A-207ENST00000419472 SEPT12Q8IYM1 358 aa6.94□□□□□ -1.3
VPS13A-207ENST00000419472 KCTD15Q96SI1 283 aaPredicted RBP6.94□□□□□ -1.3
VPS13A-207ENST00000419472 PRR14Q9BWN1 585 aa6.94□□□□□ -1.3
VPS13A-207ENST00000419472 RAB6BQ9NRW1 208 aa6.94□□□□□ -1.3
VPS13A-207ENST00000419472 KBTBD4Q9NVX7 518 aa6.94□□□□□ -1.3
VPS13A-207ENST00000419472 KLK14Q9P0G3 267 aa6.94□□□□□ -1.3
VPS13A-207ENST00000419472 SCHIP1Q9P0W5 487 aaPredicted RBP6.94□□□□□ -1.3
VPS13A-207ENST00000419472 PRR12Q9ULL5 1215 aa6.94□□□□□ -1.3
VPS13A-207ENST00000419472 BACH1O14867 736 aa6.93□□□□□ -1.3
VPS13A-207ENST00000419472 INTS6LQ5JSJ4 861 aaKnown RBP6.93□□□□□ -1.3
VPS13A-207ENST00000419472 ANKS3Q6ZW76 656 aa6.93□□□□□ -1.3
VPS13A-207ENST00000419472 HNRNPLLQ8WVV9 542 aaKnown RBP6.93□□□□□ -1.3
VPS13A-207ENST00000419472 TMPRSS4Q9NRS4 437 aa6.93□□□□□ -1.3
VPS13A-207ENST00000419472 FANCLQ9NW38 375 aa6.93□□□□□ -1.3
VPS13A-207ENST00000419472 NASPP49321 788 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-207ENST00000419472 BCAMP50895 628 aa6.93□□□□□ -1.3
VPS13A-207ENST00000419472 FOXK2Q01167 660 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms