RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 MRPL50Q8N5N7 158 aaKnown RBP11.3□□□□□ -0.6
SF3A3-201ENST00000373019 ARHGAP45Q92619 1136 aa11.3□□□□□ -0.6
SF3A3-201ENST00000373019 TRMT1Q9NXH9 659 aaKnown RBP11.3□□□□□ -0.6
SF3A3-201ENST00000373019 UPF3BQ9BZI7 483 aaKnown RBP11.3□□□□□ -0.6
SF3A3-201ENST00000373019 PTPRTO14522 1441 aa11.29□□□□□ -0.6
SF3A3-201ENST00000373019 SYT1P21579 422 aa11.29□□□□□ -0.6
SF3A3-201ENST00000373019 PIP4K2BP78356 416 aa11.29□□□□□ -0.6
SF3A3-201ENST00000373019 CCZ1BP86790 482 aa11.29□□□□□ -0.6
SF3A3-201ENST00000373019 CCZ1P86791 482 aaPredicted RBP11.29□□□□□ -0.6
SF3A3-201ENST00000373019 ARHGAP29Q52LW3 1261 aa11.29□□□□□ -0.6
SF3A3-201ENST00000373019 CCAR2Q8N163 923 aaKnown RBP11.29□□□□□ -0.6
SF3A3-201ENST00000373019 IL17RAQ96F46 866 aa11.29□□□□□ -0.6
SF3A3-201ENST00000373019 KCND1Q9NSA2 647 aa11.29□□□□□ -0.6
SF3A3-201ENST00000373019 SEC31AO94979 1220 aaKnown RBP11.29□□□□□ -0.6
SF3A3-201ENST00000373019 F13A1P00488 732 aa11.29□□□□□ -0.6
SF3A3-201ENST00000373019 OAS2P29728 719 aaKnown RBP11.29□□□□□ -0.6
SF3A3-201ENST00000373019 ANO6Q4KMQ2 910 aa11.29□□□□□ -0.6
SF3A3-201ENST00000373019 TDRD7Q8NHU6 1098 aaKnown RBP11.29□□□□□ -0.6
SF3A3-201ENST00000373019 CWC15Q9P013 229 aaKnown RBP11.29□□□□□ -0.6
SF3A3-201ENST00000373019 MAGEA9P43362 315 aa11.29□□□□□ -0.6
SF3A3-201ENST00000373019 DNM1Q05193 864 aaKnown RBP11.29□□□□□ -0.6
SF3A3-201ENST00000373019 CAMK4Q16566 473 aa11.29□□□□□ -0.6
SF3A3-201ENST00000373019 CFAP53Q96M91 514 aa11.29□□□□□ -0.6
SF3A3-201ENST00000373019 STX6O43752 255 aa11.28□□□□□ -0.6
SF3A3-201ENST00000373019 TBC1D8O95759 1140 aa11.28□□□□□ -0.6
SF3A3-201ENST00000373019 SKILP12757 684 aa11.28□□□□□ -0.6
SF3A3-201ENST00000373019 TTC31Q49AM3 519 aaPredicted RBP11.28□□□□□ -0.6
SF3A3-201ENST00000373019 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.28□□□□□ -0.6
SF3A3-201ENST00000373019 DONSONQ9NYP3 566 aa11.28□□□□□ -0.6
SF3A3-201ENST00000373019 EFCAB6Q5THR3 1501 aa11.28□□□□□ -0.6
SF3A3-201ENST00000373019 E2F4Q16254 413 aa11.28□□□□□ -0.6
SF3A3-201ENST00000373019 CXorf56Q9H5V9 222 aa11.28□□□□□ -0.6
SF3A3-201ENST00000373019 LMTK2Q8IWU2 1503 aa11.28□□□□□ -0.6
SF3A3-201ENST00000373019 CDC25BP30305 580 aa11.28□□□□□ -0.6
SF3A3-201ENST00000373019 PSD3Q9NYI0 1048 aa11.28□□□□□ -0.6
SF3A3-201ENST00000373019 CAMSAP1Q5T5Y3 1602 aa11.28□□□□□ -0.6
SF3A3-201ENST00000373019 SIGLEC1Q9BZZ2 1709 aa11.27□□□□□ -0.6
SF3A3-201ENST00000373019 ANAPC15P60006 121 aa11.27□□□□□ -0.6
SF3A3-201ENST00000373019 GPS2Q13227 327 aa11.27□□□□□ -0.6
SF3A3-201ENST00000373019 GOLGA6L1Q8N7Z2 621 aa11.27□□□□□ -0.6
SF3A3-201ENST00000373019 ORC3Q9UBD5 711 aaPredicted RBP11.27□□□□□ -0.6
SF3A3-201ENST00000373019 ADAM21Q9UKJ8 722 aa11.27□□□□□ -0.6
SF3A3-201ENST00000373019 TET3O43151 1660 aa11.27□□□□□ -0.61
SF3A3-201ENST00000373019 ELP1O95163 1332 aa11.27□□□□□ -0.61
SF3A3-201ENST00000373019 MROH2AA6NES4 1674 aa11.27□□□□□ -0.61
SF3A3-201ENST00000373019 VAMP4O75379 141 aa11.27□□□□□ -0.61
SF3A3-201ENST00000373019 MAP3K11Q16584 847 aa11.27□□□□□ -0.61
SF3A3-201ENST00000373019 TMCO3Q6UWJ1 677 aa11.27□□□□□ -0.61
SF3A3-201ENST00000373019 SLC12A5Q9H2X9 1139 aa11.27□□□□□ -0.61
SF3A3-201ENST00000373019 A2ML1A8K2U0 1454 aa11.27□□□□□ -0.61
SF3A3-201ENST00000373019 SWT1Q5T5J6 900 aaKnown RBP11.27□□□□□ -0.61
SF3A3-201ENST00000373019 FOXR1Q6PIV2 292 aa11.27□□□□□ -0.61
SF3A3-201ENST00000373019 CKAP2LQ8IYA6 745 aa11.27□□□□□ -0.61
SF3A3-201ENST00000373019 ATP10DQ9P241 1426 aa11.27□□□□□ -0.61
SF3A3-201ENST00000373019 C3P01024 1663 aa11.26□□□□□ -0.61
SF3A3-201ENST00000373019 UGGT1Q9NYU2 1555 aa11.26□□□□□ -0.61
SF3A3-201ENST00000373019 LIG1P18858 919 aa11.26□□□□□ -0.61
SF3A3-201ENST00000373019 CASTP20810 708 aaKnown RBP11.26□□□□□ -0.61
SF3A3-201ENST00000373019 ACTN2P35609 894 aa11.26□□□□□ -0.61
SF3A3-201ENST00000373019 SMC1AQ14683 1233 aaKnown RBP11.26□□□□□ -0.61
SF3A3-201ENST00000373019 SYTL4Q96C24 671 aaPredicted RBP11.26□□□□□ -0.61
SF3A3-201ENST00000373019 TUBGCP6Q96RT7 1819 aa11.26□□□□□ -0.61
SF3A3-201ENST00000373019 DNAJC21Q5F1R6 531 aaKnown RBP11.26□□□□□ -0.61
SF3A3-201ENST00000373019 SUGP1Q8IWZ8 645 aaKnown RBP11.26□□□□□ -0.61
SF3A3-201ENST00000373019 TSPYL6Q8N831 410 aa11.26□□□□□ -0.61
SF3A3-201ENST00000373019 EXOC4Q96A65 974 aa11.26□□□□□ -0.61
SF3A3-201ENST00000373019 ESYT1Q9BSJ8 1104 aa11.26□□□□□ -0.61
SF3A3-201ENST00000373019 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.26□□□□□ -0.612e-9■■□□□ 14.4
SF3A3-201ENST00000373019 ATP8B1O43520 1251 aa11.25□□□□□ -0.61
SF3A3-201ENST00000373019 EGFL6Q8IUX8 553 aa11.25□□□□□ -0.61
SF3A3-201ENST00000373019 DEPDC5O75140 1603 aa11.25□□□□□ -0.61
SF3A3-201ENST00000373019 USP32Q8NFA0 1604 aa11.25□□□□□ -0.61
SF3A3-201ENST00000373019 KIAA1210Q9ULL0 1709 aa11.25□□□□□ -0.61
SF3A3-201ENST00000373019 EIF3CLB5ME19 914 aaKnown RBP11.25□□□□□ -0.61
SF3A3-201ENST00000373019 RBM43Q6ZSC3 357 aaKnown RBP11.25□□□□□ -0.61
SF3A3-201ENST00000373019 ZNF428Q96B54 188 aa11.25□□□□□ -0.61
SF3A3-201ENST00000373019 EIF3CQ99613 913 aaKnown RBP11.25□□□□□ -0.61
SF3A3-201ENST00000373019 NEMFO60524 1076 aa11.25□□□□□ -0.61
SF3A3-201ENST00000373019 CCDC189A1A4V9 331 aa11.24□□□□□ -0.61
SF3A3-201ENST00000373019 FILIP1Q7Z7B0 1213 aa11.24□□□□□ -0.61
SF3A3-201ENST00000373019 NUP62CLQ9H1M0 184 aa11.24□□□□□ -0.61
SF3A3-201ENST00000373019 SUFUQ9UMX1 484 aa11.24□□□□□ -0.61
SF3A3-201ENST00000373019 MROH1Q8NDA8 1641 aa11.24□□□□□ -0.61
SF3A3-201ENST00000373019 CCDC69A6NI79 296 aa11.24□□□□□ -0.61
SF3A3-201ENST00000373019 DTNBO60941 627 aa11.24□□□□□ -0.61
SF3A3-201ENST00000373019 LMAN1P49257 510 aa11.24□□□□□ -0.61
SF3A3-201ENST00000373019 E4F1Q66K89 784 aaPredicted RBP11.24□□□□□ -0.61
SF3A3-201ENST00000373019 ANKRD44Q8N8A2 993 aa11.24□□□□□ -0.61
SF3A3-201ENST00000373019 OSBPL3Q9H4L5 887 aa11.24□□□□□ -0.61
SF3A3-201ENST00000373019 APBB1O00213 710 aa11.24□□□□□ -0.61
SF3A3-201ENST00000373019 TTC6Q86TZ1 520 aa11.24□□□□□ -0.61
SF3A3-201ENST00000373019 DEF6Q9H4E7 631 aa11.24□□□□□ -0.61
SF3A3-201ENST00000373019 CHMP3Q9Y3E7 222 aa11.24□□□□□ -0.61
SF3A3-201ENST00000373019 ZNF165P49910 485 aa11.23□□□□□ -0.61
SF3A3-201ENST00000373019 CCDC34Q96HJ3 373 aa11.23□□□□□ -0.61
SF3A3-201ENST00000373019 MTMR6Q9Y217 621 aa11.23□□□□□ -0.61
SF3A3-201ENST00000373019 USP16Q9Y5T5 823 aa11.23□□□□□ -0.61
SF3A3-201ENST00000373019 RPGRIP1LQ68CZ1 1315 aa11.23□□□□□ -0.61
SF3A3-201ENST00000373019 SATB1Q01826 763 aa11.23□□□□□ -0.61
SF3A3-201ENST00000373019 NOM1Q5C9Z4 860 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms