RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 FKBP4Q02790 459 aaKnown RBP eCLIP8.18□□□□□ -1.1
SF3B1-201ENST00000335508 JMYQ8N9B5 988 aa8.18□□□□□ -1.1
SF3B1-201ENST00000335508 METTL22Q9BUU2 404 aaPredicted RBP8.18□□□□□ -1.1
SF3B1-201ENST00000335508 CCDC196A0A1B0GTZ2 297 aa8.18□□□□□ -1.1
SF3B1-201ENST00000335508 SPTY2D1Q68D10 685 aaPredicted RBP8.18□□□□□ -1.1
SF3B1-201ENST00000335508 NFXL1Q6ZNB6 911 aa8.18□□□□□ -1.1
SF3B1-201ENST00000335508 ABCF2Q9UG63 623 aa8.18□□□□□ -1.1
SF3B1-201ENST00000335508 CDKL5O76039 1030 aa8.18□□□□□ -1.1
SF3B1-201ENST00000335508 ANAPC15P60006 121 aa8.18□□□□□ -1.1
SF3B1-201ENST00000335508 RASSF8Q8NHQ8 419 aa8.18□□□□□ -1.1
SF3B1-201ENST00000335508 USP21Q9UK80 565 aa8.18□□□□□ -1.1
SF3B1-201ENST00000335508 PRIM1P49642 420 aaKnown RBP8.18□□□□□ -1.1
SF3B1-201ENST00000335508 PDE1AP54750 535 aa8.18□□□□□ -1.1
SF3B1-201ENST00000335508 RPGRQ92834 1020 aaKnown RBP8.18□□□□□ -1.1
SF3B1-201ENST00000335508 NIP7Q9Y221 180 aaKnown RBP eCLIP8.18□□□□□ -1.1
SF3B1-201ENST00000335508 CPSF1Q10570 1443 aaKnown RBP8.18□□□□□ -1.1
SF3B1-201ENST00000335508 PTPRMP28827 1452 aa8.18□□□□□ -1.1
SF3B1-201ENST00000335508 ZBTB7BO15156 539 aaPredicted RBP8.17□□□□□ -1.1
SF3B1-201ENST00000335508 MARCH6O60337 910 aa8.17□□□□□ -1.1
SF3B1-201ENST00000335508 ANKRD18AQ8IVF6 992 aa8.17□□□□□ -1.1
SF3B1-201ENST00000335508 RAI14Q9P0K7 980 aa8.17□□□□□ -1.1
SF3B1-201ENST00000335508 TAOK2Q9UL54 1235 aa8.17□□□□□ -1.1
SF3B1-201ENST00000335508 BICDL1Q6ZP65 573 aa8.17□□□□□ -1.1
SF3B1-201ENST00000335508 LGR6Q9HBX8 967 aa8.17□□□□□ -1.1
SF3B1-201ENST00000335508 CCDC87Q9NVE4 849 aa8.17□□□□□ -1.1
SF3B1-201ENST00000335508 EYA2O00167 538 aa8.17□□□□□ -1.1
SF3B1-201ENST00000335508 IL6STP40189 918 aaPredicted RBP8.17□□□□□ -1.1
SF3B1-201ENST00000335508 HMG20BQ9P0W2 317 aa8.17□□□□□ -1.1
SF3B1-201ENST00000335508 C1orf167Q5SNV9 1468 aa8.17□□□□□ -1.1
SF3B1-201ENST00000335508 TPM4P67936 248 aa8.17□□□□□ -1.1
SF3B1-201ENST00000335508 NOL8Q76FK4 1167 aaKnown RBP8.17□□□□□ -1.1
SF3B1-201ENST00000335508 BRMS1Q9HCU9 246 aa8.17□□□□□ -1.1
SF3B1-201ENST00000335508 SH2B1Q9NRF2 756 aaPredicted RBP8.17□□□□□ -1.1
SF3B1-201ENST00000335508 NEURL4Q96JN8 1562 aa8.17□□□□□ -1.1
SF3B1-201ENST00000335508 SETBP1Q9Y6X0 1596 aa8.17□□□□□ -1.1
SF3B1-201ENST00000335508 ZGPATQ8N5A5 531 aaKnown RBP8.17□□□□□ -1.1
SF3B1-201ENST00000335508 CCNL1Q9UK58 526 aaPredicted RBP8.17□□□□□ -1.1
SF3B1-201ENST00000335508 RAD50Q92878 1312 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 RLBP1P12271 317 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 IMMTQ16891 758 aaKnown RBP8.16□□□□□ -1.1
SF3B1-201ENST00000335508 KRT24Q2M2I5 525 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 UTP14AQ9BVJ6 771 aaKnown RBP8.16□□□□□ -1.1
SF3B1-201ENST00000335508 DCCP43146 1447 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 VPS37CA5D8V6 355 aaPredicted RBP8.16□□□□□ -1.1
SF3B1-201ENST00000335508 CDC42BPBQ9Y5S2 1711 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 CFAP65Q6ZU64 1925 aaKnown RBP8.16□□□□□ -1.1
SF3B1-201ENST00000335508 TCIRG1Q13488 830 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 GIGYF2Q6Y7W6 1299 aaKnown RBP8.16□□□□□ -1.1
SF3B1-201ENST00000335508 CCDC73Q6ZRK6 1079 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 PLEKHF1Q96S99 279 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 BAG3O95817 575 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 GCKRQ14397 625 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 CEP85Q6P2H3 762 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 FAM196AQ6ZSG2 479 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 SPRYD3Q8NCJ5 442 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 NAP1L5Q96NT1 182 aaPredicted RBP8.16□□□□□ -1.1
SF3B1-201ENST00000335508 UBAC1Q9BSL1 405 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 VWDEQ8N2E2 1590 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 NUCB1Q02818 461 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 CCDC47Q96A33 483 aaKnown RBP8.16□□□□□ -1.1
SF3B1-201ENST00000335508 BOLA2Q9H3K6 86 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 NCAPD2Q15021 1401 aa8.16□□□□□ -1.1
SF3B1-201ENST00000335508 WDR33Q9C0J8 1336 aaKnown RBP8.15□□□□□ -1.1
SF3B1-201ENST00000335508 BAG6P46379 1132 aa8.15□□□□□ -1.1
SF3B1-201ENST00000335508 PLCB2Q00722 1185 aa8.15□□□□□ -1.1
SF3B1-201ENST00000335508 ZNF772Q68DY9 489 aaPredicted RBP8.15□□□□□ -1.1
SF3B1-201ENST00000335508 CCDC85AQ96PX6 553 aaPredicted RBP8.15□□□□□ -1.1
SF3B1-201ENST00000335508 HOOK1Q9UJC3 728 aaKnown RBP8.15□□□□□ -1.1
SF3B1-201ENST00000335508 NRXN1Q9ULB1 1477 aa8.15□□□□□ -1.1
SF3B1-201ENST00000335508 HMGN5P82970 282 aaKnown RBP8.15□□□□□ -1.1
SF3B1-201ENST00000335508 TICAM2Q86XR7 235 aa8.15□□□□□ -1.1
SF3B1-201ENST00000335508 NAPBQ9H115 298 aa8.15□□□□□ -1.1
SF3B1-201ENST00000335508 TULP4Q9NRJ4 1543 aa8.15□□□□□ -1.1
SF3B1-201ENST00000335508 TDO2P48775 406 aa8.15□□□□□ -1.1
SF3B1-201ENST00000335508 PPP4R3BQ5MIZ7 849 aa8.15□□□□□ -1.1
SF3B1-201ENST00000335508 ANKRD2Q9GZV1 360 aa8.15□□□□□ -1.1
SF3B1-201ENST00000335508 SPATA31D1Q6ZQQ2 1576 aa8.15□□□□□ -1.1
SF3B1-201ENST00000335508 C6orf229H3BNL8 230 aa8.15□□□□□ -1.11
SF3B1-201ENST00000335508 TRAPPC3LQ5T215 181 aa8.15□□□□□ -1.11
SF3B1-201ENST00000335508 SSH3Q8TE77 659 aa8.15□□□□□ -1.11
SF3B1-201ENST00000335508 CTDP1Q9Y5B0 961 aaPredicted RBP8.15□□□□□ -1.11
SF3B1-201ENST00000335508 JCADQ9P266 1359 aa8.15□□□□□ -1.11
SF3B1-201ENST00000335508 CERS3Q8IU89 383 aa8.15□□□□□ -1.11
SF3B1-201ENST00000335508 USP16Q9Y5T5 823 aa8.15□□□□□ -1.11
SF3B1-201ENST00000335508 REREQ9P2R6 1566 aa8.14□□□□□ -1.11
SF3B1-201ENST00000335508 IRS4O14654 1257 aaPredicted RBP8.14□□□□□ -1.11
SF3B1-201ENST00000335508 ST5P78524 1137 aa8.14□□□□□ -1.11
SF3B1-201ENST00000335508 TRAF1Q13077 416 aa8.14□□□□□ -1.11
SF3B1-201ENST00000335508 MCTP1Q6DN14 999 aa8.14□□□□□ -1.11
SF3B1-201ENST00000335508 IQCA1Q86XH1 822 aa8.14□□□□□ -1.11
SF3B1-201ENST00000335508 NLGN1Q8N2Q7 840 aa8.14□□□□□ -1.11
SF3B1-201ENST00000335508 ZC3H12CQ9C0D7 883 aaKnown RBP8.14□□□□□ -1.11
SF3B1-201ENST00000335508 ABCC4O15439 1325 aa8.14□□□□□ -1.11
SF3B1-201ENST00000335508 KDRP35968 1356 aa8.14□□□□□ -1.11
SF3B1-201ENST00000335508 ALKQ9UM73 1620 aa8.14□□□□□ -1.11
SF3B1-201ENST00000335508 CCDC8Q9H0W5 538 aaPredicted RBP8.14□□□□□ -1.11
SF3B1-201ENST00000335508 TFCP2L1Q9NZI6 479 aa8.14□□□□□ -1.11
SF3B1-201ENST00000335508 AOX1Q06278 1338 aa8.14□□□□□ -1.11
SF3B1-201ENST00000335508 SOS2Q07890 1332 aaPredicted RBP8.14□□□□□ -1.11
SF3B1-201ENST00000335508 LOC102724428A0A0B4J2F2 783 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 174 ms