RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 DDX49Q9Y6V7 483 aaKnown RBP2.76□□□□□ -1.97
SCFD1-219ENST00000556413 RBBP6Q7Z6E9 1792 aaKnown RBP2.76□□□□□ -1.97
SCFD1-219ENST00000556413 LAMA2P24043 3122 aaKnown RBP2.76□□□□□ -1.97
SCFD1-219ENST00000556413 PRUNE2Q8WUY3 3088 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 ATRXP46100 2492 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 RPAP1Q9BWH6 1393 aaPredicted RBP2.75□□□□□ -1.97
SCFD1-219ENST00000556413 MROH7-TTC4A0A0A0MT08 1334 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 FEZF1A0PJY2 475 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 FSD2A1L4K1 749 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 ZNF840PA6NDX5 716 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 LRRC72A6NJI9 287 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 B4DLN1 442 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 CTDSP2O14595 271 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 ADAMDEC1O15204 470 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 GALR3O60755 368 aaPredicted RBP2.75□□□□□ -1.97
SCFD1-219ENST00000556413 CNMDO75829 334 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 CEACAM4O75871 244 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 HPP00738 406 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 ZBTB25P24278 435 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 HOXD10P28358 340 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 ACSL1P33121 698 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 CSTF2P33240 577 aaKnown RBP eCLIP2.75□□□□□ -1.97
SCFD1-219ENST00000556413 MRPL12P52815 198 aaKnown RBP2.75□□□□□ -1.97
SCFD1-219ENST00000556413 PNLIPRP2P54317 469 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 IRX3P78415 501 aaPredicted RBP2.75□□□□□ -1.97
SCFD1-219ENST00000556413 POU5F1Q01860 360 aaKnown RBP2.75□□□□□ -1.97
SCFD1-219ENST00000556413 SHHQ15465 462 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 RABL6Q3YEC7 729 aaPredicted RBP2.75□□□□□ -1.97
SCFD1-219ENST00000556413 TEX38Q6PEX7 206 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 FAM198BQ6UWH4 519 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 CDHR3Q6ZTQ4 885 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 HAUS6Q7Z4H7 955 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 KBTBD6Q86V97 674 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 NUDT13Q86X67 352 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 TDHQ8IZJ6 230 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 TRPV1Q8NER1 839 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 ACER1Q8TDN7 264 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 DHX58Q96C10 678 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 LINC00167Q96N53 147 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 NEK1Q96PY6 1258 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 HOXD1Q9GZZ0 328 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 PARLQ9H300 379 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 ZHX3Q9H4I2 956 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 PIH1D3Q9NQM4 214 aaKnown RBP2.75□□□□□ -1.97
SCFD1-219ENST00000556413 B4GALT7Q9UBV7 327 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 TBC1D29Q9UFV1 150 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 AGTPBP1Q9UPW5 1226 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 PTRH2Q9Y3E5 179 aaKnown RBP2.75□□□□□ -1.97
SCFD1-219ENST00000556413 KIF25-AS1Q9Y6Z4 181 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 DDX60LQ5H9U9 1706 aaKnown RBP2.75□□□□□ -1.97
SCFD1-219ENST00000556413 MYH3P11055 1940 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 COL4A4P53420 1690 aaPredicted RBP2.75□□□□□ -1.97
SCFD1-219ENST00000556413 CDH23Q9H251 3354 aa2.75□□□□□ -1.97
SCFD1-219ENST00000556413 GAKO14976 1311 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 ALPK3Q96L96 1907 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 IGHV4-30-2A0A087WSY4 118 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 A0A1B0GUL7 405 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 H0YAE9 185 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 SNAP91O60641 907 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 UBTFL1P0CB47 393 aaPredicted RBP2.74□□□□□ -1.97
SCFD1-219ENST00000556413 TRIM21P19474 475 aaKnown RBP2.74□□□□□ -1.97
SCFD1-219ENST00000556413 JAK1P23458 1154 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 GCH1P30793 250 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 SIRPAP78324 504 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 CAPRIN1Q14444 709 aaKnown RBP2.74□□□□□ -1.97
SCFD1-219ENST00000556413 C3AR1Q16581 482 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 SLC35D3Q5M8T2 416 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 TMCO3Q6UWJ1 677 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 LEKR1Q6ZMV7 388 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 TIPARPQ7Z3E1 657 aaKnown RBP2.74□□□□□ -1.97
SCFD1-219ENST00000556413 GPR142Q7Z601 462 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 ADCK1Q86TW2 530 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 CEP57Q86XR8 500 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 LINC00346Q8IVM7 164 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 C17orf53Q8N3J3 647 aaPredicted RBP2.74□□□□□ -1.97
SCFD1-219ENST00000556413 FBXO39Q8N4B4 442 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 BADQ92934 168 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 DYNLL2Q96FJ2 89 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 ZNF597Q96LX8 424 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 FAM218AQ96MZ4 157 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 CDRT15Q96T59 188 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 CDX2Q99626 313 aaPredicted RBP2.74□□□□□ -1.97
SCFD1-219ENST00000556413 OLFM1Q99784 485 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 TREX2Q9BQ50 279 aaPredicted RBP2.74□□□□□ -1.97
SCFD1-219ENST00000556413 CHCHD5Q9BSY4 110 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 SPATC1LQ9H0A9 340 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 SLITRK2Q9H156 845 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 SYNCQ9H7C4 482 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 GPN1Q9HCN4 374 aaPredicted RBP2.74□□□□□ -1.97
SCFD1-219ENST00000556413 HAUS2Q9NVX0 235 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 ARHGEF38Q9NXL2 777 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 HMG20BQ9P0W2 317 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 POMT2Q9UKY4 750 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 ZNF148Q9UQR1 794 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 NME7Q9Y5B8 376 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 ECM29Q5VYK3 1845 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 PHIPQ8WWQ0 1821 aa2.74□□□□□ -1.97
SCFD1-219ENST00000556413 IL16Q14005 1332 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 DOCK2Q92608 1830 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 A0A087WWV3 80 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms