RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	PBP1	P53297	722 aa	Known RBP	4.3	□□□□□ -1.72
NUP85	YJR042W	SDA1	P53313	767 aa	Known RBP	4.3	□□□□□ -1.72
NUP85	YJR042W	TLG1	Q03322	224 aa		4.3	□□□□□ -1.72
NUP85	YJR042W	HDA2	Q06629	674 aa		4.3	□□□□□ -1.72
NUP85	YJR042W	HBN1	Q96VH4	193 aa		4.3	□□□□□ -1.72
NUP85	YJR042W	RPP1B	P10622	106 aa	Known RBP	4.29	□□□□□ -1.72
NUP85	YJR042W	TRK1	P12685	1235 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	RAM1	P22007	431 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	GFD2	P25370	566 aa	Known RBP	4.29	□□□□□ -1.72
NUP85	YJR042W	PCL2	P25693	308 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	NUP120	P35729	1037 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	XKS1	P42826	600 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	SET4	P42948	560 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	YAP1802	P53309	568 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	SNP1	Q00916	300 aa	Predicted RBP	4.29	□□□□□ -1.72
NUP85	YJR042W	YDR286C	Q05530	114 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	BRE4	Q07660	1125 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	TRE2	Q08693	809 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	SBA1	P28707	216 aa	Known RBP	4.29	□□□□□ -1.72
NUP85	YJR042W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	4.29	□□□□□ -1.72	not detected
NUP85	YJR042W	MRP8	P35719	219 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	NTA1	P40354	457 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	SAP185	P40856	1058 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	VTC2	P43585	828 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	TAF1	P46677	1066 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	MET5	P47169	1442 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	YGR250C	P53316	781 aa	Known RBP	4.29	□□□□□ -1.72
NUP85	YJR042W	ELP4	Q02884	456 aa	Known RBP	4.29	□□□□□ -1.72
NUP85	YJR042W	MLC2	Q06580	163 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	GIC2	Q06648	383 aa		4.29	□□□□□ -1.72
NUP85	YJR042W	TY3B-I	Q7LHG5	1498 aa	Known RBP	4.28	□□□□□ -1.72
NUP85	YJR042W	YLR419W	Q06698	1435 aa	Known RBP	4.28	□□□□□ -1.72
NUP85	YJR042W	SPO16	P17122	198 aa		4.28	□□□□□ -1.72
NUP85	YJR042W	MSN1	P22148	382 aa		4.28	□□□□□ -1.72
NUP85	YJR042W	VBA3	P25594	458 aa		4.28	□□□□□ -1.72
NUP85	YJR042W	RXT2	P38255	430 aa		4.28	□□□□□ -1.72
NUP85	YJR042W	ACA1	P39970	489 aa		4.28	□□□□□ -1.72
NUP85	YJR042W	DOT6	P40059	670 aa	Known RBP	4.28	□□□□□ -1.72
NUP85	YJR042W	ALR2	P43553	858 aa		4.28	□□□□□ -1.72
NUP85	YJR042W	NUT1	P53114	1132 aa		4.28	□□□□□ -1.72
NUP85	YJR042W	SYH1	Q02875	849 aa	Known RBP	4.28	□□□□□ -1.72
NUP85	YJR042W	BUL2	Q03758	920 aa	Known RBP	4.28	□□□□□ -1.72
NUP85	YJR042W	MRL1	Q06815	381 aa		4.28	□□□□□ -1.72
NUP85	YJR042W	ATG20	Q07528	640 aa		4.28	□□□□□ -1.72
NUP85	YJR042W	PSR2	Q07949	397 aa		4.28	□□□□□ -1.72
NUP85	YJR042W	DBP10	Q12389	995 aa	Known RBP	4.28	□□□□□ -1.72
NUP85	YJR042W	HSP82	P02829	709 aa	Known RBP	4.27	□□□□□ -1.73
NUP85	YJR042W	BRF1	P29056	596 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	DPH2	P32461	534 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	BEM3	P32873	1128 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	SMC1	P32908	1225 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	PBY1	P38254	753 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	HIS6	P40545	261 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	HUL4	P40985	892 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	BFA1	P47113	574 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	YJR096W	P47137	282 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	YNL165W	P53891	406 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	SRP1	Q02821	542 aa	Known RBP	4.27	□□□□□ -1.73
NUP85	YJR042W	EIS1	Q05050	843 aa	Known RBP	4.27	□□□□□ -1.73
NUP85	YJR042W	NEW1	Q08972	1196 aa	Known RBP	4.27	□□□□□ -1.73
NUP85	YJR042W	PPH3	P32345	308 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	DHR2	P36009	735 aa	Predicted RBP	4.27	□□□□□ -1.73
NUP85	YJR042W	RAD55	P38953	406 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	PSY2	P40164	858 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	MON1	P53129	644 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	MOT3	P54785	490 aa	Known RBP	4.27	□□□□□ -1.73
NUP85	YJR042W	VPS30	Q02948	557 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	RGA2	Q06407	1009 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	SPN1	Q06505	410 aa	Predicted RBP	4.27	□□□□□ -1.73
NUP85	YJR042W	YPL191C	Q08930	360 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	IOC2	Q12072	812 aa		4.27	□□□□□ -1.73
NUP85	YJR042W	CLF1	Q12309	687 aa	Predicted RBP	4.27	□□□□□ -1.73
NUP85	YJR042W	CDC9	P04819	755 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	CHS3	P29465	1165 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	VPH1	P32563	840 aa	Known RBP	4.26	□□□□□ -1.73
NUP85	YJR042W	RTG1	P32607	177 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	PRS1	P32895	427 aa	Known RBP	4.26	□□□□□ -1.73
NUP85	YJR042W	JNM1	P36224	373 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	BCD1	P38772	366 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	MBP1	P39678	833 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	OAF1	P39720	1047 aa	Predicted RBP	4.26	□□□□□ -1.73
NUP85	YJR042W	QRI7	P43122	407 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	PRP3	Q03338	469 aa	Predicted RBP	4.26	□□□□□ -1.73
NUP85	YJR042W	ARA2	Q04212	335 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	YLR352W	Q06479	807 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	SEC23	P15303	768 aa	Known RBP	4.26	□□□□□ -1.73
NUP85	YJR042W	MET8	P15807	274 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	PRP5	P21372	849 aa	Predicted RBP	4.26	□□□□□ -1.73
NUP85	YJR042W	SAN1	P22470	610 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	KRR1	P25586	316 aa	Predicted RBP	4.26	□□□□□ -1.73
NUP85	YJR042W	AAD3	P25612	363 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	HEM12	P32347	362 aa	Predicted RBP	4.26	□□□□□ -1.73
NUP85	YJR042W	VMA8	P32610	256 aa	Known RBP	4.26	□□□□□ -1.73
NUP85	YJR042W	MOT2	P34909	587 aa	Known RBP	4.26	□□□□□ -1.73
NUP85	YJR042W	PAN5	P38787	379 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	MAM1	P40065	302 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	DUG1	P43616	481 aa	Known RBP	4.26	□□□□□ -1.73
NUP85	YJR042W	SGM1	P47166	707 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	GTR1	Q00582	310 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	CEG1	Q01159	459 aa	Predicted RBP	4.26	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 26.8 ms