RNA–Protein interactions for RNA: YGL090W

LIF1, Transcript of Component of the DNA ligase IV complex, yeast

Gene LIF1, Length 1,266 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LIF1	YGL090W	GCV2	P49095	1034 aa		4.2	□□□□□ -1.74
LIF1	YGL090W	GTF1	P53260	183 aa	Predicted RBP	4.2	□□□□□ -1.74
LIF1	YGL090W	SLI1	P53304	468 aa		4.2	□□□□□ -1.74
LIF1	YGL090W	YML122C	Q03207	126 aa		4.2	□□□□□ -1.74
LIF1	YGL090W	RSM24	Q03976	319 aa		4.2	□□□□□ -1.74
LIF1	YGL090W	UBX5	Q06682	500 aa		4.2	□□□□□ -1.74
LIF1	YGL090W	SVS1	Q12254	260 aa		4.2	□□□□□ -1.74
LIF1	YGL090W	TAF13	P11747	167 aa		4.19	□□□□□ -1.74
LIF1	YGL090W	HCM1	P25364	564 aa		4.19	□□□□□ -1.74
LIF1	YGL090W	APL1	P27351	700 aa		4.19	□□□□□ -1.74
LIF1	YGL090W	PEP7	P32609	515 aa		4.19	□□□□□ -1.74
LIF1	YGL090W	MCM7	P38132	845 aa		4.19	□□□□□ -1.74
LIF1	YGL090W	RGD1	P38339	666 aa		4.19	□□□□□ -1.74
LIF1	YGL090W	YFR016C	P43597	1233 aa	Known RBP	4.19	□□□□□ -1.74
LIF1	YGL090W	CNN1	P43618	361 aa		4.19	□□□□□ -1.74
LIF1	YGL090W	RPS0B	P46654	252 aa	Known RBP	4.19	□□□□□ -1.74
LIF1	YGL090W	DBP5	P20449	482 aa	Known RBP	4.18	□□□□□ -1.74
LIF1	YGL090W	DOM34	P33309	386 aa		4.18	□□□□□ -1.74
LIF1	YGL090W	RER2	P35196	286 aa		4.18	□□□□□ -1.74
LIF1	YGL090W	RRP14	P36080	434 aa	Known RBP	4.18	□□□□□ -1.74
LIF1	YGL090W	MGE1	P38523	228 aa		4.18	□□□□□ -1.74
LIF1	YGL090W	TMA10	Q06177	86 aa		4.18	□□□□□ -1.74
LIF1	YGL090W	BUD21	Q08492	214 aa	Predicted RBP	4.18	□□□□□ -1.74
LIF1	YGL090W	BAS1	P22035	811 aa		4.17	□□□□□ -1.74
LIF1	YGL090W	CDC20	P26309	610 aa		4.17	□□□□□ -1.74
LIF1	YGL090W	TOM20	P35180	183 aa		4.17	□□□□□ -1.74
LIF1	YGL090W	MPH1	P40562	993 aa		4.17	□□□□□ -1.74
LIF1	YGL090W	SUN4	P53616	420 aa		4.17	□□□□□ -1.74
LIF1	YGL090W	TIF35	Q04067	274 aa	Known RBP	4.17	□□□□□ -1.74
LIF1	YGL090W	DBP2	P24783	546 aa	Known RBP	4.16	□□□□□ -1.74
LIF1	YGL090W	TOA1	P32773	286 aa		4.16	□□□□□ -1.74
LIF1	YGL090W	LST4	P34239	828 aa		4.16	□□□□□ -1.74
LIF1	YGL090W	YJR107W	P47145	328 aa		4.16	□□□□□ -1.74
LIF1	YGL090W	CTF4	Q01454	927 aa		4.16	□□□□□ -1.74
LIF1	YGL090W	ACK1	Q07622	623 aa	Predicted RBP	4.16	□□□□□ -1.74
LIF1	YGL090W	GPB1	Q08886	897 aa		4.16	□□□□□ -1.74
LIF1	YGL090W	CDC6	P09119	513 aa		4.15	□□□□□ -1.75
LIF1	YGL090W	MOT2	P34909	587 aa	Known RBP	4.15	□□□□□ -1.75
LIF1	YGL090W	UGA2	P38067	497 aa		4.15	□□□□□ -1.75
LIF1	YGL090W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.15	□□□□□ -1.75	not detected
LIF1	YGL090W	MNN10	P50108	393 aa	Known RBP	4.15	□□□□□ -1.75
LIF1	YGL090W	MCM6	P53091	1017 aa	Known RBP	4.15	□□□□□ -1.75
LIF1	YGL090W	YAP6	Q03935	383 aa		4.15	□□□□□ -1.75
LIF1	YGL090W	RXT3	Q07458	294 aa		4.15	□□□□□ -1.75
LIF1	YGL090W	RPL11A	P0C0W9	174 aa	Known RBP	4.14	□□□□□ -1.75
LIF1	YGL090W	KIN2	P13186	1147 aa	Known RBP	4.14	□□□□□ -1.75
LIF1	YGL090W	STE11	P23561	717 aa		4.14	□□□□□ -1.75
LIF1	YGL090W	PMI40	P29952	429 aa	Known RBP	4.14	□□□□□ -1.75
LIF1	YGL090W	AIM21	P40563	679 aa		4.14	□□□□□ -1.75
LIF1	YGL090W	RRP15	Q06511	250 aa	Predicted RBP	4.14	□□□□□ -1.75
LIF1	YGL090W	RPL11B	Q3E757	174 aa	Predicted RBP	4.14	□□□□□ -1.75
LIF1	YGL090W	BI4	P03879	638 aa		4.13	□□□□□ -1.75
LIF1	YGL090W	EMC1	P25574	760 aa		4.13	□□□□□ -1.75
LIF1	YGL090W	TPM2	P40414	161 aa		4.13	□□□□□ -1.75
LIF1	YGL090W	TY4A-J	P47023	414 aa		4.13	□□□□□ -1.75
LIF1	YGL090W	ENT3	P47160	408 aa		4.13	□□□□□ -1.75
LIF1	YGL090W	ZDS1	P50111	915 aa	Known RBP	4.13	□□□□□ -1.75
LIF1	YGL090W	PHO23	P50947	330 aa		4.13	□□□□□ -1.75
LIF1	YGL090W	YGL081W	P53156	320 aa		4.13	□□□□□ -1.75
LIF1	YGL090W	RNH70	P53331	553 aa		4.13	□□□□□ -1.75
LIF1	YGL090W	NTO1	Q12311	748 aa		4.13	□□□□□ -1.75
LIF1	YGL090W	YOL098C	Q12496	1037 aa		4.13	□□□□□ -1.75
LIF1	YGL090W	SSB1	P11484	613 aa	Known RBP	4.12	□□□□□ -1.75
LIF1	YGL090W	RAD53	P22216	821 aa		4.12	□□□□□ -1.75
LIF1	YGL090W	RAD27	P26793	382 aa		4.12	□□□□□ -1.75
LIF1	YGL090W	RPS0A	P32905	252 aa	Known RBP	4.12	□□□□□ -1.75
LIF1	YGL090W	SSB2	P40150	613 aa	Known RBP	4.12	□□□□□ -1.75
LIF1	YGL090W	BRE1	Q07457	700 aa	Known RBP	4.12	□□□□□ -1.75
LIF1	YGL090W	XYL2	Q07993	356 aa		4.12	□□□□□ -1.75
LIF1	YGL090W	RTT10	Q08924	1013 aa		4.12	□□□□□ -1.75
LIF1	YGL090W	HIF1	Q12373	385 aa		4.12	□□□□□ -1.75
LIF1	YGL090W	ACE2	P21192	770 aa		4.11	□□□□□ -1.75
LIF1	YGL090W	HFM1	P51979	1187 aa		4.11	□□□□□ -1.75
LIF1	YGL090W	VPS62	P53285	467 aa		4.11	□□□□□ -1.75
LIF1	YGL090W	MSC2	Q03455	724 aa		4.11	□□□□□ -1.75
LIF1	YGL090W	TMA64	Q04600	565 aa	Known RBP	4.11	□□□□□ -1.75
LIF1	YGL090W	YLR224W	Q05947	369 aa		4.11	□□□□□ -1.75
LIF1	YGL090W	ESF1	Q06344	628 aa	Known RBP	4.11	□□□□□ -1.75
LIF1	YGL090W	SPP382	Q06411	708 aa	Predicted RBP	4.11	□□□□□ -1.75
LIF1	YGL090W	GNT1	Q12096	491 aa		4.11	□□□□□ -1.75
LIF1	YGL090W	DUT1	P33317	147 aa		4.1	□□□□□ -1.75
LIF1	YGL090W	SLA2	P33338	968 aa		4.1	□□□□□ -1.75
LIF1	YGL090W	MFT1	P33441	392 aa	Known RBP	4.1	□□□□□ -1.75
LIF1	YGL090W	PBP1	P53297	722 aa	Known RBP	4.1	□□□□□ -1.75
LIF1	YGL090W	OYE2	Q03558	400 aa	Known RBP	4.1	□□□□□ -1.75
LIF1	YGL090W	CEF1	Q03654	590 aa	Predicted RBP	4.1	□□□□□ -1.75
LIF1	YGL090W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.1	□□□□□ -1.75	not detected
LIF1	YGL090W	ACM1	Q08981	209 aa		4.1	□□□□□ -1.75
LIF1	YGL090W	HMI1	Q12039	706 aa		4.1	□□□□□ -1.75
LIF1	YGL090W	YPL066W	Q12194	479 aa		4.1	□□□□□ -1.75
LIF1	YGL090W	TRP2	P00899	507 aa	Known RBP	4.09	□□□□□ -1.75
LIF1	YGL090W	TSR4	P25040	408 aa		4.09	□□□□□ -1.75
LIF1	YGL090W	PPG1	P32838	368 aa		4.09	□□□□□ -1.75
LIF1	YGL090W	YJL049W	P47048	450 aa		4.09	□□□□□ -1.75
LIF1	YGL090W	EEB1	Q02891	456 aa		4.09	□□□□□ -1.75
LIF1	YGL090W	SIZ1	Q04195	904 aa		4.09	□□□□□ -1.75
LIF1	YGL090W	POB3	Q04636	552 aa	Known RBP	4.09	□□□□□ -1.75
LIF1	YGL090W	ATG13	Q06628	738 aa		4.09	□□□□□ -1.75
LIF1	YGL090W	YDL121C	Q07541	149 aa		4.09	□□□□□ -1.75
LIF1	YGL090W	INO1	P11986	533 aa		4.08	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 16.4 ms