RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	CCC2	P38995	1004 aa		6.29	□□□□□ -1.4
CAF16	YFL028C	IRC20	Q06554	1556 aa		6.29	□□□□□ -1.4
CAF16	YFL028C	ELG1	Q12050	791 aa		6.29	□□□□□ -1.4
CAF16	YFL028C	SLP1	Q12232	587 aa		6.29	□□□□□ -1.4
CAF16	YFL028C	PDR12	Q02785	1511 aa		6.29	□□□□□ -1.4
CAF16	YFL028C	GPM1	P00950	247 aa	Known RBP	6.28	□□□□□ -1.4
CAF16	YFL028C	SAC7	P17121	654 aa		6.28	□□□□□ -1.4
CAF16	YFL028C	ERS1	P17261	260 aa		6.28	□□□□□ -1.4
CAF16	YFL028C	NFS1	P25374	497 aa		6.28	□□□□□ -1.4
CAF16	YFL028C	KNS1	P32350	737 aa	Predicted RBP	6.28	□□□□□ -1.4
CAF16	YFL028C	RGD1	P38339	666 aa		6.28	□□□□□ -1.4
CAF16	YFL028C	ACO2	P39533	789 aa		6.28	□□□□□ -1.4
CAF16	YFL028C	YLL054C	Q12244	843 aa		6.28	□□□□□ -1.4
CAF16	YFL028C	NOP14	Q99207	810 aa	Known RBP	6.28	□□□□□ -1.4
CAF16	YFL028C	GRX4	P32642	244 aa		6.27	□□□□□ -1.41
CAF16	YFL028C	DNM1	P54861	757 aa		6.27	□□□□□ -1.41
CAF16	YFL028C	NTG2	Q08214	380 aa		6.27	□□□□□ -1.41
CAF16	YFL028C	GDB1	Q06625	1536 aa		6.26	□□□□□ -1.41
CAF16	YFL028C	MSH2	P25847	964 aa		6.26	□□□□□ -1.41
CAF16	YFL028C	HSE1	P38753	452 aa		6.26	□□□□□ -1.41
CAF16	YFL028C	CRP1	P38845	465 aa	Known RBP	6.26	□□□□□ -1.41
CAF16	YFL028C	SIP5	P40210	489 aa	Known RBP	6.26	□□□□□ -1.41
CAF16	YFL028C	HSV2	P50079	448 aa	Predicted RBP	6.26	□□□□□ -1.41
CAF16	YFL028C	YGL081W	P53156	320 aa		6.26	□□□□□ -1.41
CAF16	YFL028C	YGR045C	P53229	120 aa		6.26	□□□□□ -1.41
CAF16	YFL028C	ELA1	P53861	379 aa	Predicted RBP	6.26	□□□□□ -1.41
CAF16	YFL028C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	6.26	□□□□□ -1.41	not detected
CAF16	YFL028C	SPP382	Q06411	708 aa	Predicted RBP	6.26	□□□□□ -1.41
CAF16	YFL028C	YDR306C	Q06640	478 aa		6.26	□□□□□ -1.41
CAF16	YFL028C	GNT1	Q12096	491 aa		6.26	□□□□□ -1.41
CAF16	YFL028C	HBN1	Q96VH4	193 aa		6.26	□□□□□ -1.41
CAF16	YFL028C	ADR1	P07248	1323 aa		6.25	□□□□□ -1.41
CAF16	YFL028C	TOM70	P07213	617 aa	Known RBP	6.25	□□□□□ -1.41
CAF16	YFL028C	SSB1	P11484	613 aa	Known RBP	6.25	□□□□□ -1.41
CAF16	YFL028C	HBS1	P32769	611 aa	Known RBP	6.25	□□□□□ -1.41
CAF16	YFL028C	TOM20	P35180	183 aa		6.25	□□□□□ -1.41
CAF16	YFL028C	MAE1	P36013	669 aa	Known RBP	6.25	□□□□□ -1.41
CAF16	YFL028C	YBR284W	P38150	797 aa		6.25	□□□□□ -1.41
CAF16	YFL028C	SSB2	P40150	613 aa	Known RBP	6.25	□□□□□ -1.41
CAF16	YFL028C	VPS53	P47061	822 aa		6.25	□□□□□ -1.41
CAF16	YFL028C	NUP170	P38181	1502 aa		6.25	□□□□□ -1.41
CAF16	YFL028C	DRS2	P39524	1355 aa		6.24	□□□□□ -1.41
CAF16	YFL028C	TY4B-P	A0A0B7P3V8	1104 aa		6.24	□□□□□ -1.41
CAF16	YFL028C	TOP3	P13099	656 aa		6.24	□□□□□ -1.41
CAF16	YFL028C	AAR2	P32357	355 aa	Predicted RBP	6.24	□□□□□ -1.41
CAF16	YFL028C	SFP1	P32432	683 aa		6.24	□□□□□ -1.41
CAF16	YFL028C	YJR008W	P47085	338 aa		6.24	□□□□□ -1.41
CAF16	YFL028C	KIP3	P53086	805 aa	Known RBP	6.24	□□□□□ -1.41
CAF16	YFL028C	TPO2	P53283	614 aa		6.24	□□□□□ -1.41
CAF16	YFL028C	TY4A-H	Q6Q5P6	413 aa		6.24	□□□□□ -1.41
CAF16	YFL028C	YER152C	P10356	443 aa		6.23	□□□□□ -1.41
CAF16	YFL028C	CDC11	P32458	415 aa		6.23	□□□□□ -1.41
CAF16	YFL028C	QNS1	P38795	714 aa	Known RBP	6.23	□□□□□ -1.41
CAF16	YFL028C	YEN1	P40028	759 aa		6.23	□□□□□ -1.41
CAF16	YFL028C	RSA3	Q05942	220 aa	Known RBP	6.23	□□□□□ -1.41
CAF16	YFL028C	GIC2	Q06648	383 aa		6.23	□□□□□ -1.41
CAF16	YFL028C	SPO21	Q12411	609 aa		6.23	□□□□□ -1.41
CAF16	YFL028C	NHA1	Q99271	985 aa		6.23	□□□□□ -1.41
CAF16	YFL028C	TY3B-G	Q99315	1547 aa		6.23	□□□□□ -1.41
CAF16	YFL028C	GEA1	P47102	1408 aa	Predicted RBP	6.23	□□□□□ -1.41
CAF16	YFL028C	KIP1	P28742	1111 aa		6.22	□□□□□ -1.41
CAF16	YFL028C	PPH3	P32345	308 aa		6.22	□□□□□ -1.41
CAF16	YFL028C	UBP12	P39538	1254 aa		6.22	□□□□□ -1.41
CAF16	YFL028C	GDH3	P39708	457 aa		6.22	□□□□□ -1.41
CAF16	YFL028C	DOT1	Q04089	582 aa	Known RBP	6.22	□□□□□ -1.41
CAF16	YFL028C	DUS3	Q06053	668 aa	Known RBP	6.22	□□□□□ -1.41
CAF16	YFL028C	YOR223W	Q12015	292 aa		6.22	□□□□□ -1.41
CAF16	YFL028C	NUP157	P40064	1391 aa	Known RBP	6.21	□□□□□ -1.41
CAF16	YFL028C	YBT1	P32386	1661 aa		6.21	□□□□□ -1.42
CAF16	YFL028C	RPL8A	P17076	256 aa	Known RBP	6.21	□□□□□ -1.42
CAF16	YFL028C	RET1	P22276	1149 aa	Known RBP	6.21	□□□□□ -1.42
CAF16	YFL028C	GPB2	P39717	880 aa		6.21	□□□□□ -1.42
CAF16	YFL028C	GEM1	P39722	662 aa		6.21	□□□□□ -1.42
CAF16	YFL028C	DSE4	P53753	1117 aa		6.21	□□□□□ -1.42
CAF16	YFL028C	TFB2	Q02939	513 aa		6.21	□□□□□ -1.42
CAF16	YFL028C	YPL260W	Q08977	551 aa		6.21	□□□□□ -1.42
CAF16	YFL028C	YPR071W	Q12346	211 aa		6.21	□□□□□ -1.42
CAF16	YFL028C	PDR10	P51533	1564 aa		6.21	□□□□□ -1.42
CAF16	YFL028C	GAR1	P28007	205 aa	Known RBP	6.2	□□□□□ -1.42
CAF16	YFL028C	PEX6	P33760	1030 aa		6.2	□□□□□ -1.42
CAF16	YFL028C	NMD3	P38861	518 aa	Known RBP	6.2	□□□□□ -1.42
CAF16	YFL028C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	6.2	□□□□□ -1.42	not detected
CAF16	YFL028C	ZDS1	P50111	915 aa	Known RBP	6.2	□□□□□ -1.42
CAF16	YFL028C	MAL11	P53048	616 aa		6.2	□□□□□ -1.42
CAF16	YFL028C	UGO1	Q03327	502 aa		6.2	□□□□□ -1.42
CAF16	YFL028C	YLR257W	Q06146	321 aa	Known RBP	6.2	□□□□□ -1.42
CAF16	YFL028C	IQG1	Q12280	1495 aa		6.2	□□□□□ -1.42
CAF16	YFL028C	MMS1	Q06211	1407 aa		6.19	□□□□□ -1.42
CAF16	YFL028C	RPL11A	P0C0W9	174 aa	Known RBP	6.19	□□□□□ -1.42
CAF16	YFL028C	MSD1	P15179	658 aa	Known RBP	6.19	□□□□□ -1.42
CAF16	YFL028C	DOM34	P33309	386 aa		6.19	□□□□□ -1.42
CAF16	YFL028C	PNT1	P38969	423 aa		6.19	□□□□□ -1.42
CAF16	YFL028C	DSS1	P39112	969 aa		6.19	□□□□□ -1.42
CAF16	YFL028C	MXR1	P40029	184 aa		6.19	□□□□□ -1.42
CAF16	YFL028C	YNR029C	P53729	429 aa	Known RBP	6.19	□□□□□ -1.42
CAF16	YFL028C	RPL11B	Q3E757	174 aa	Predicted RBP	6.19	□□□□□ -1.42
CAF16	YFL028C	DBP2	P24783	546 aa	Known RBP	6.18	□□□□□ -1.42
CAF16	YFL028C	RRM3	P38766	723 aa		6.18	□□□□□ -1.42
CAF16	YFL028C	UBP6	P43593	499 aa	Known RBP	6.18	□□□□□ -1.42
CAF16	YFL028C	JJJ3	P47138	172 aa		6.18	□□□□□ -1.42

Retrieved 100 of 5,963 RNA–protein pairs in 17.6 ms