RNA–Protein interactions for RNA: YFL008W

SMC1, Transcript of Subunit of the multiprotein cohesin complex, yeastyeast

Gene SMC1, Length 3,678 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SMC1YFL008W OCA5P38738 679 aa1.9□□□□□ -2.11
SMC1YFL008W XYL2Q07993 356 aa1.9□□□□□ -2.11
SMC1YFL008W FKS3Q04952 1785 aa1.9□□□□□ -2.11
SMC1YFL008W RPL11AP0C0W9 174 aaKnown RBP1.89□□□□□ -2.11
SMC1YFL008W RPS4AP0CX35 261 aaKnown RBP1.89□□□□□ -2.11
SMC1YFL008W RPS4BP0CX36 261 aaKnown RBP1.89□□□□□ -2.11
SMC1YFL008W RET1P22276 1149 aaKnown RBP1.89□□□□□ -2.11
SMC1YFL008W KIP1P28742 1111 aa1.89□□□□□ -2.11
SMC1YFL008W TAF1P46677 1066 aa1.89□□□□□ -2.11
SMC1YFL008W ERG5P54781 538 aa1.89□□□□□ -2.11
SMC1YFL008W RPL11BQ3E757 174 aaPredicted RBP1.89□□□□□ -2.11
SMC1YFL008W SCP160P06105 1222 aaKnown RBP RIP-Chip data1.89□□□□□ -2.11 RIP-Chip
SMC1YFL008W YSC84P32793 468 aa1.89□□□□□ -2.11
SMC1YFL008W RPN3P40016 523 aaKnown RBP1.89□□□□□ -2.11
SMC1YFL008W SDH1Q00711 640 aa1.89□□□□□ -2.11
SMC1YFL008W IML1P47170 1584 aa1.89□□□□□ -2.11
SMC1YFL008W ELA1P53861 379 aaPredicted RBP1.89□□□□□ -2.11
SMC1YFL008W SIZ1Q04195 904 aa1.89□□□□□ -2.11
SMC1YFL008W AOS1Q06624 347 aa1.89□□□□□ -2.11
SMC1YFL008W GIC2Q06648 383 aa1.89□□□□□ -2.11
SMC1YFL008W NPP1P25353 742 aa1.88□□□□□ -2.11
SMC1YFL008W LIP5P32875 414 aa1.88□□□□□ -2.11
SMC1YFL008W MXR1P40029 184 aa1.88□□□□□ -2.11
SMC1YFL008W YGR130CP53278 816 aa1.88□□□□□ -2.11
SMC1YFL008W PEX13P80667 386 aa1.88□□□□□ -2.11
SMC1YFL008W TY4B-HP0C2J7 1802 aa1.88□□□□□ -2.11
SMC1YFL008W TY4B-JP47024 1803 aa1.88□□□□□ -2.11
SMC1YFL008W ACE2P21192 770 aa1.88□□□□□ -2.11
SMC1YFL008W SEG2P34250 1132 aa1.88□□□□□ -2.11
SMC1YFL008W WHI3P34761 661 aaKnown RBP1.88□□□□□ -2.11
SMC1YFL008W MNR2P35724 969 aa1.88□□□□□ -2.11
SMC1YFL008W YBR238CP38330 731 aaKnown RBP1.88□□□□□ -2.11
SMC1YFL008W RTT10Q08924 1013 aa1.88□□□□□ -2.11
SMC1YFL008W NNK1P36003 928 aa1.88□□□□□ -2.11
SMC1YFL008W SPF1P39986 1215 aaKnown RBP1.88□□□□□ -2.11
SMC1YFL008W UTP10P42945 1769 aaKnown RBP1.88□□□□□ -2.11
SMC1YFL008W MMS22Q06164 1454 aa1.87□□□□□ -2.11
SMC1YFL008W AKR1P39010 764 aa1.87□□□□□ -2.11
SMC1YFL008W YAR028WP39548 234 aa1.87□□□□□ -2.11
SMC1YFL008W HRQ1Q05549 1077 aa1.87□□□□□ -2.11
SMC1YFL008W EST2Q06163 884 aa1.87□□□□□ -2.11
SMC1YFL008W SYP1P25623 870 aaKnown RBP1.87□□□□□ -2.11
SMC1YFL008W RSC6P25632 483 aa1.87□□□□□ -2.11
SMC1YFL008W ERT1P38140 529 aa1.87□□□□□ -2.11
SMC1YFL008W CNN1P43618 361 aa1.87□□□□□ -2.11
SMC1YFL008W HXT16P47185 567 aa1.87□□□□□ -2.11
SMC1YFL008W SSY1Q03770 852 aa1.87□□□□□ -2.11
SMC1YFL008W YLR257WQ06146 321 aaKnown RBP1.87□□□□□ -2.11
SMC1YFL008W LTE1P07866 1435 aa1.87□□□□□ -2.11
SMC1YFL008W UFD4P33202 1483 aa1.87□□□□□ -2.11
SMC1YFL008W MRPS18P42847 217 aa1.87□□□□□ -2.11
SMC1YFL008W TYW3P53177 273 aa1.87□□□□□ -2.11
SMC1YFL008W MSC2Q03455 724 aa1.87□□□□□ -2.11
SMC1YFL008W ESF1Q06344 628 aaKnown RBP1.87□□□□□ -2.11
SMC1YFL008W YRF1-3P0CX14 1859 aa1.87□□□□□ -2.11
SMC1YFL008W YRF1-7P0CX15 1859 aa1.87□□□□□ -2.11
SMC1YFL008W YRF1-6P53819 1859 aa1.87□□□□□ -2.11
SMC1YFL008W CHS2P14180 963 aa1.86□□□□□ -2.11
SMC1YFL008W PRP6P19735 899 aaPredicted RBP1.86□□□□□ -2.11
SMC1YFL008W MIH1P23748 554 aa1.86□□□□□ -2.11
SMC1YFL008W NFS1P25374 497 aa1.86□□□□□ -2.11
SMC1YFL008W AGP1P25376 633 aa1.86□□□□□ -2.11
SMC1YFL008W STE14P32584 239 aa1.86□□□□□ -2.11
SMC1YFL008W KAE1P36132 386 aa1.86□□□□□ -2.11
SMC1YFL008W GIC1P38785 314 aa1.86□□□□□ -2.11
SMC1YFL008W GPB2P39717 880 aa1.86□□□□□ -2.11
SMC1YFL008W SIT1P39980 628 aa1.86□□□□□ -2.11
SMC1YFL008W MMM1P41800 426 aa1.86□□□□□ -2.11
SMC1YFL008W SHE9Q04172 456 aa1.86□□□□□ -2.11
SMC1YFL008W TRE1Q08919 783 aa1.86□□□□□ -2.11
SMC1YFL008W TRM3Q07527 1436 aa1.86□□□□□ -2.11
SMC1YFL008W SNF2P22082 1703 aa1.86□□□□□ -2.11
SMC1YFL008W CYC7P00045 113 aa1.86□□□□□ -2.11
SMC1YFL008W MSB1P21339 1137 aaKnown RBP1.86□□□□□ -2.11
SMC1YFL008W RNQ1P25367 405 aa1.86□□□□□ -2.11
SMC1YFL008W MLS1P30952 554 aa1.86□□□□□ -2.11
SMC1YFL008W LST4P34239 828 aa1.86□□□□□ -2.11
SMC1YFL008W BET3P36149 193 aa1.86□□□□□ -2.11
SMC1YFL008W RGD1P38339 666 aa1.86□□□□□ -2.11
SMC1YFL008W CIT3P43635 486 aa1.86□□□□□ -2.11
SMC1YFL008W FAR11P53917 953 aa1.86□□□□□ -2.11
SMC1YFL008W RSC58Q07979 502 aa1.86□□□□□ -2.11
SMC1YFL008W OPI10Q08202 246 aa1.86□□□□□ -2.11
SMC1YFL008W BI4P03879 638 aa1.86□□□□□ -2.11
SMC1YFL008W COQ2P32378 372 aa1.86□□□□□ -2.11
SMC1YFL008W CDC12P32468 407 aaKnown RBP1.86□□□□□ -2.11
SMC1YFL008W HSP78P33416 811 aa1.86□□□□□ -2.11
SMC1YFL008W TSL1P38427 1098 aaKnown RBP1.86□□□□□ -2.11
SMC1YFL008W TOS1P38288 455 aa1.85□□□□□ -2.11
SMC1YFL008W YBR287WP38355 427 aa1.85□□□□□ -2.11
SMC1YFL008W CHA4P43634 648 aa1.85□□□□□ -2.11
SMC1YFL008W GUS1P46655 708 aaKnown RBP RIP-Chip data1.85□□□□□ -2.11not detected
SMC1YFL008W HFM1P51979 1187 aa1.85□□□□□ -2.11
SMC1YFL008W SVF1Q05515 481 aa1.85□□□□□ -2.11
SMC1YFL008W YLR225CQ05948 407 aaKnown RBP1.85□□□□□ -2.11
SMC1YFL008W APC1P53886 1748 aa1.85□□□□□ -2.11
SMC1YFL008W ABD1P32783 436 aaPredicted RBP1.85□□□□□ -2.11
SMC1YFL008W DOM34P33309 386 aa1.85□□□□□ -2.11
SMC1YFL008W VBA5P36172 582 aa1.85□□□□□ -2.11
SMC1YFL008W URM1P40554 99 aaPredicted RBP1.85□□□□□ -2.11
Retrieved 100 of 5,963 RNA–protein pairs in 72.8 ms