RNA–Protein interactions for RNA: YFL005W

SEC4, Transcript of Rab family GTPase, yeast

Gene SEC4, Length 648 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum, Nucleus, Peroxisome .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC4	YFL005W	YKL107W	P34251	309 aa		4.66	□□□□□ -1.66
SEC4	YFL005W	SHM2	P37291	469 aa	Known RBP	4.66	□□□□□ -1.66
SEC4	YFL005W	PBY1	P38254	753 aa		4.66	□□□□□ -1.66
SEC4	YFL005W	YGL176C	P46945	554 aa		4.66	□□□□□ -1.66
SEC4	YFL005W	HUL5	P53119	910 aa		4.66	□□□□□ -1.66
SEC4	YFL005W	YPL260W	Q08977	551 aa		4.66	□□□□□ -1.66
SEC4	YFL005W	PNS1	Q12412	539 aa		4.66	□□□□□ -1.66
SEC4	YFL005W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.65	□□□□□ -1.67	not detected
SEC4	YFL005W	TIM54	P47045	478 aa		4.65	□□□□□ -1.67
SEC4	YFL005W	GNT1	Q12096	491 aa		4.65	□□□□□ -1.67
SEC4	YFL005W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.64	□□□□□ -1.67	not detected
SEC4	YFL005W	NMD2	P38798	1089 aa	Known RBP	4.64	□□□□□ -1.67
SEC4	YFL005W	BUD6	P41697	788 aa		4.64	□□□□□ -1.67
SEC4	YFL005W	YFL054C	P43549	646 aa		4.64	□□□□□ -1.67
SEC4	YFL005W	FMP25	Q08023	583 aa		4.64	□□□□□ -1.67
SEC4	YFL005W	RCL1	Q08096	367 aa	Predicted RBP	4.64	□□□□□ -1.67
SEC4	YFL005W	HRK1	Q08732	759 aa	Known RBP	4.64	□□□□□ -1.67
SEC4	YFL005W	YPL066W	Q12194	479 aa		4.64	□□□□□ -1.67
SEC4	YFL005W	CIT2	P08679	460 aa		4.63	□□□□□ -1.67
SEC4	YFL005W	SAM35	P14693	329 aa		4.63	□□□□□ -1.67
SEC4	YFL005W	RPL8B	P29453	256 aa	Known RBP	4.63	□□□□□ -1.67
SEC4	YFL005W	MDL2	P33311	773 aa		4.63	□□□□□ -1.67
SEC4	YFL005W	RNH70	P53331	553 aa		4.63	□□□□□ -1.67
SEC4	YFL005W	FLC1	Q08967	793 aa		4.63	□□□□□ -1.67
SEC4	YFL005W	SPO21	Q12411	609 aa		4.63	□□□□□ -1.67
SEC4	YFL005W	OSH2	Q12451	1283 aa		4.63	□□□□□ -1.67
SEC4	YFL005W	YER152C	P10356	443 aa		4.62	□□□□□ -1.67
SEC4	YFL005W	CTS1	P29029	562 aa		4.62	□□□□□ -1.67
SEC4	YFL005W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected
SEC4	YFL005W	YHR020W	P38708	688 aa	Known RBP	4.62	□□□□□ -1.67
SEC4	YFL005W	YHL012W	P38709	493 aa		4.62	□□□□□ -1.67
SEC4	YFL005W	MBP1	P39678	833 aa		4.62	□□□□□ -1.67
SEC4	YFL005W	RPN3	P40016	523 aa	Known RBP	4.62	□□□□□ -1.67
SEC4	YFL005W	CHZ1	P40019	153 aa	Predicted RBP	4.62	□□□□□ -1.67
SEC4	YFL005W	PFD1	P46988	109 aa		4.62	□□□□□ -1.67
SEC4	YFL005W	YGR125W	P53273	1036 aa		4.62	□□□□□ -1.67
SEC4	YFL005W	UTP8	P53276	713 aa	Known RBP	4.62	□□□□□ -1.67
SEC4	YFL005W	SPP382	Q06411	708 aa	Predicted RBP	4.62	□□□□□ -1.67
SEC4	YFL005W	PRP9	P19736	530 aa	Known RBP	4.61	□□□□□ -1.67
SEC4	YFL005W	HSP60	P19882	572 aa	Known RBP	4.61	□□□□□ -1.67
SEC4	YFL005W	YSC84	P32793	468 aa		4.61	□□□□□ -1.67
SEC4	YFL005W	GGA2	P38817	585 aa	Known RBP	4.61	□□□□□ -1.67
SEC4	YFL005W	PNT1	P38969	423 aa		4.61	□□□□□ -1.67
SEC4	YFL005W	RSP5	P39940	809 aa	Known RBP	4.61	□□□□□ -1.67
SEC4	YFL005W	SIP5	P40210	489 aa	Known RBP	4.61	□□□□□ -1.67
SEC4	YFL005W	ERP6	P53198	216 aa		4.61	□□□□□ -1.67
SEC4	YFL005W	EAF1	Q06337	982 aa		4.61	□□□□□ -1.67
SEC4	YFL005W	CIT1	P00890	479 aa		4.6	□□□□□ -1.67
SEC4	YFL005W	SCT1	P32784	759 aa		4.6	□□□□□ -1.67
SEC4	YFL005W	YPT53	P36019	220 aa		4.6	□□□□□ -1.67
SEC4	YFL005W	HOS3	Q02959	697 aa	Known RBP	4.6	□□□□□ -1.67
SEC4	YFL005W	PPM2	Q08282	695 aa		4.6	□□□□□ -1.67
SEC4	YFL005W	RPL11A	P0C0W9	174 aa	Known RBP	4.59	□□□□□ -1.67
SEC4	YFL005W	SNF5	P18480	905 aa		4.59	□□□□□ -1.67
SEC4	YFL005W	DBP2	P24783	546 aa	Known RBP	4.59	□□□□□ -1.67
SEC4	YFL005W	ARE1	P25628	610 aa		4.59	□□□□□ -1.67
SEC4	YFL005W	PPG1	P32838	368 aa		4.59	□□□□□ -1.67
SEC4	YFL005W	RRP14	P36080	434 aa	Known RBP	4.59	□□□□□ -1.67
SEC4	YFL005W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.59	□□□□□ -1.67	not detected
SEC4	YFL005W	DOS2	P54858	310 aa		4.59	□□□□□ -1.67
SEC4	YFL005W	RPL11B	Q3E757	174 aa	Predicted RBP	4.59	□□□□□ -1.67
SEC4	YFL005W	GAL11	P19659	1081 aa		4.58	□□□□□ -1.68
SEC4	YFL005W	SRO9	P25567	434 aa	Known RBP	4.58	□□□□□ -1.68
SEC4	YFL005W	GEM1	P39722	662 aa		4.58	□□□□□ -1.68
SEC4	YFL005W	MXR1	P40029	184 aa		4.58	□□□□□ -1.68
SEC4	YFL005W	NUP82	P40368	713 aa		4.58	□□□□□ -1.68
SEC4	YFL005W	HUL4	P40985	892 aa		4.58	□□□□□ -1.68
SEC4	YFL005W	ALR2	P43553	858 aa		4.58	□□□□□ -1.68
SEC4	YFL005W	ENV11	P53246	860 aa		4.58	□□□□□ -1.68
SEC4	YFL005W	TNA1	P53322	534 aa		4.58	□□□□□ -1.68
SEC4	YFL005W	CAN1	P04817	590 aa		4.57	□□□□□ -1.68
SEC4	YFL005W	AIM26	P32858	118 aa		4.57	□□□□□ -1.68
SEC4	YFL005W	BAP2	P38084	609 aa		4.57	□□□□□ -1.68
SEC4	YFL005W	BRN1	P38170	754 aa		4.57	□□□□□ -1.68
SEC4	YFL005W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	not detected
SEC4	YFL005W	TPO2	P53283	614 aa		4.57	□□□□□ -1.68
SEC4	YFL005W	ALG12	P53730	551 aa		4.57	□□□□□ -1.68
SEC4	YFL005W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	not detected
SEC4	YFL005W	UBX5	Q06682	500 aa		4.57	□□□□□ -1.68
SEC4	YFL005W	YOR352W	Q08816	343 aa		4.57	□□□□□ -1.68
SEC4	YFL005W	ACM1	Q08981	209 aa		4.57	□□□□□ -1.68
SEC4	YFL005W	COQ4	O13525	335 aa		4.56	□□□□□ -1.68
SEC4	YFL005W	CDC11	P32458	415 aa		4.56	□□□□□ -1.68
SEC4	YFL005W	TAF8	Q03750	510 aa		4.56	□□□□□ -1.68
SEC4	YFL005W	YDR132C	Q03900	495 aa		4.56	□□□□□ -1.68
SEC4	YFL005W	YDR306C	Q06640	478 aa		4.56	□□□□□ -1.68
SEC4	YFL005W	YLR125W	Q12138	136 aa		4.56	□□□□□ -1.68
SEC4	YFL005W	THS1	P04801	734 aa	Known RBP	4.55	□□□□□ -1.68
SEC4	YFL005W	PHO8	P11491	566 aa		4.55	□□□□□ -1.68
SEC4	YFL005W	HBS1	P32769	611 aa	Known RBP	4.55	□□□□□ -1.68
SEC4	YFL005W	TIM23	P32897	222 aa		4.55	□□□□□ -1.68
SEC4	YFL005W	SLA2	P33338	968 aa		4.55	□□□□□ -1.68
SEC4	YFL005W	PIK1	P39104	1066 aa		4.55	□□□□□ -1.68
SEC4	YFL005W	SRP1	Q02821	542 aa	Known RBP	4.55	□□□□□ -1.68
SEC4	YFL005W	YDL124W	Q07551	312 aa	Known RBP	4.55	□□□□□ -1.68
SEC4	YFL005W	RSC58	Q07979	502 aa		4.55	□□□□□ -1.68
SEC4	YFL005W	MET6	P05694	767 aa	Known RBP	4.54	□□□□□ -1.68
SEC4	YFL005W	AAR2	P32357	355 aa	Predicted RBP	4.54	□□□□□ -1.68
SEC4	YFL005W	TRM2	P33753	639 aa		4.54	□□□□□ -1.68
SEC4	YFL005W	SPC42	P36094	363 aa		4.54	□□□□□ -1.68

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