RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeast

Gene UBC8, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC8	YEL012W	RDH54	P38086	958 aa		5.4	□□□□□ -1.54
UBC8	YEL012W	EXO5	P38289	585 aa		5.4	□□□□□ -1.54
UBC8	YEL012W	TAT2	P38967	592 aa		5.4	□□□□□ -1.54
UBC8	YEL012W	LSB6	P42951	607 aa		5.4	□□□□□ -1.54
UBC8	YEL012W	IOC3	P43596	787 aa		5.4	□□□□□ -1.54
UBC8	YEL012W	YGR053C	P53234	283 aa		5.4	□□□□□ -1.54
UBC8	YEL012W	RRP46	P53256	223 aa	Predicted RBP	5.4	□□□□□ -1.54
UBC8	YEL012W	YNR065C	P53751	1116 aa		5.4	□□□□□ -1.54
UBC8	YEL012W	SYF1	Q04048	859 aa	Predicted RBP	5.4	□□□□□ -1.54
UBC8	YEL012W	FLO11	P08640	1367 aa		5.4	□□□□□ -1.55
UBC8	YEL012W	RSM26	P47141	266 aa		5.39	□□□□□ -1.55
UBC8	YEL012W	EEB1	Q02891	456 aa		5.39	□□□□□ -1.55
UBC8	YEL012W	RTT10	Q08924	1013 aa		5.39	□□□□□ -1.55
UBC8	YEL012W	YOL098C	Q12496	1037 aa		5.39	□□□□□ -1.55
UBC8	YEL012W	CSR2	Q12734	1121 aa		5.39	□□□□□ -1.55
UBC8	YEL012W	TY1A-LR4	P0C2I8	440 aa	Known RBP	5.38	□□□□□ -1.55
UBC8	YEL012W	TY1A-DR6	P0CX70	440 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	TY1A-ER1	P0CX71	440 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	TY1A-LR2	P0CX72	440 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	TY1A-PL	P0CX73	440 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	TY1A-JR1	P0CX74	440 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	TY1A-LR3	P0CX75	440 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	TY1A-ML2	P0CX76	440 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	MSH3	P25336	1018 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	SQT1	P35184	431 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	CEM1	P39525	442 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	HXT13	P39924	564 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	GSM1	P42950	618 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	HXT17	P53631	564 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	HXT15	P54854	567 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	GDE1	Q02979	1223 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	FCP1	Q03254	732 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	TY1A-GR1	Q12085	440 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	REC8	Q12188	680 aa		5.38	□□□□□ -1.55
UBC8	YEL012W	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	5.38	□□□□□ -1.55
UBC8	YEL012W	TY1A-OL	Q92392	440 aa	Known RBP	5.38	□□□□□ -1.55
UBC8	YEL012W	HTS1	P07263	546 aa	Known RBP	5.37	□□□□□ -1.55
UBC8	YEL012W	NCS6	P53088	359 aa		5.37	□□□□□ -1.55
UBC8	YEL012W	CWC24	P53769	259 aa		5.37	□□□□□ -1.55
UBC8	YEL012W	PEX13	P80667	386 aa		5.37	□□□□□ -1.55
UBC8	YEL012W	HAS1	Q03532	505 aa	Known RBP	5.37	□□□□□ -1.55
UBC8	YEL012W	HDA2	Q06629	674 aa		5.37	□□□□□ -1.55
UBC8	YEL012W	MRL1	Q06815	381 aa		5.37	□□□□□ -1.55
UBC8	YEL012W	GSC2	P40989	1895 aa		5.37	□□□□□ -1.55
UBC8	YEL012W	YKL069W	P36088	180 aa		5.36	□□□□□ -1.55
UBC8	YEL012W	GUP1	P53154	560 aa		5.36	□□□□□ -1.55
UBC8	YEL012W	RRG1	Q12167	365 aa	Predicted RBP	5.36	□□□□□ -1.55
UBC8	YEL012W	SSK22	P25390	1331 aa	Predicted RBP	5.35	□□□□□ -1.55
UBC8	YEL012W	CBP1	P07252	654 aa		5.35	□□□□□ -1.55
UBC8	YEL012W	TAF13	P11747	167 aa		5.35	□□□□□ -1.55
UBC8	YEL012W	PDC5	P16467	563 aa	Known RBP	5.35	□□□□□ -1.55
UBC8	YEL012W	NEM1	P38757	446 aa		5.35	□□□□□ -1.55
UBC8	YEL012W	RPT4	P53549	437 aa	Known RBP	5.35	□□□□□ -1.55
UBC8	YEL012W	OPI10	Q08202	246 aa		5.35	□□□□□ -1.55
UBC8	YEL012W	WRS1	Q12109	432 aa	Known RBP	5.35	□□□□□ -1.55
UBC8	YEL012W	COQ4	O13525	335 aa		5.34	□□□□□ -1.55
UBC8	YEL012W	GPM1	P00950	247 aa	Known RBP	5.34	□□□□□ -1.55
UBC8	YEL012W	PRI2	P20457	528 aa		5.34	□□□□□ -1.55
UBC8	YEL012W	NAR1	P23503	491 aa	Known RBP	5.34	□□□□□ -1.55
UBC8	YEL012W	KRE2	P27809	442 aa		5.34	□□□□□ -1.55
UBC8	YEL012W	MOT2	P34909	587 aa	Known RBP	5.34	□□□□□ -1.55
UBC8	YEL012W	MAL31	P38156	614 aa		5.34	□□□□□ -1.55
UBC8	YEL012W	SPL2	P38839	148 aa		5.34	□□□□□ -1.55
UBC8	YEL012W	YJL049W	P47048	450 aa		5.34	□□□□□ -1.55
UBC8	YEL012W	SOK2	P53438	785 aa	Predicted RBP	5.34	□□□□□ -1.55
UBC8	YEL012W	SIW14	P53965	281 aa		5.34	□□□□□ -1.55
UBC8	YEL012W	PKH1	Q03407	766 aa		5.34	□□□□□ -1.55
UBC8	YEL012W	NSE3	Q05541	303 aa		5.34	□□□□□ -1.55
UBC8	YEL012W	FPR4	Q06205	392 aa	Predicted RBP	5.34	□□□□□ -1.55
UBC8	YEL012W	YIG1	Q08956	461 aa		5.34	□□□□□ -1.55
UBC8	YEL012W	VPS13	Q07878	3144 aa		5.34	□□□□□ -1.56
UBC8	YEL012W	LYS2	P07702	1392 aa		5.33	□□□□□ -1.56
UBC8	YEL012W	KNS1	P32350	737 aa	Predicted RBP	5.33	□□□□□ -1.56
UBC8	YEL012W	APE3	P37302	537 aa	Known RBP	5.33	□□□□□ -1.56
UBC8	YEL012W	SHU2	P38957	223 aa		5.33	□□□□□ -1.56
UBC8	YEL012W	POL5	P39985	1022 aa	Known RBP	5.33	□□□□□ -1.56
UBC8	YEL012W	SPF1	P39986	1215 aa	Known RBP	5.33	□□□□□ -1.56
UBC8	YEL012W	SLS1	P42900	643 aa		5.33	□□□□□ -1.56
UBC8	YEL012W	YNL050C	P53952	270 aa		5.33	□□□□□ -1.56
UBC8	YEL012W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	5.33	□□□□□ -1.56	not detected
UBC8	YEL012W	GIS4	Q04233	774 aa		5.33	□□□□□ -1.56
UBC8	YEL012W	TMA46	Q12000	345 aa	Known RBP	5.33	□□□□□ -1.56
UBC8	YEL012W	DPH6	Q12429	685 aa		5.33	□□□□□ -1.56
UBC8	YEL012W	VMA4	P22203	233 aa	Known RBP	5.32	□□□□□ -1.56
UBC8	YEL012W	RER2	P35196	286 aa		5.32	□□□□□ -1.56
UBC8	YEL012W	ICP55	P40051	511 aa		5.32	□□□□□ -1.56
UBC8	YEL012W	NEO1	P40527	1151 aa		5.32	□□□□□ -1.56
UBC8	YEL012W	JJJ3	P47138	172 aa		5.32	□□□□□ -1.56
UBC8	YEL012W	ENT3	P47160	408 aa		5.32	□□□□□ -1.56
UBC8	YEL012W	ROD1	Q02805	837 aa		5.32	□□□□□ -1.56
UBC8	YEL012W	UTP5	Q04177	643 aa	Known RBP	5.32	□□□□□ -1.56
UBC8	YEL012W	BMS1	Q08965	1183 aa	Known RBP	5.32	□□□□□ -1.56
UBC8	YEL012W	TRP2	P00899	507 aa	Known RBP	5.31	□□□□□ -1.56
UBC8	YEL012W	RPS7A	P26786	190 aa	Known RBP	5.31	□□□□□ -1.56
UBC8	YEL012W	YKL077W	P36081	392 aa		5.31	□□□□□ -1.56
UBC8	YEL012W	PAN5	P38787	379 aa		5.31	□□□□□ -1.56
UBC8	YEL012W	GIP2	P40036	548 aa		5.31	□□□□□ -1.56
UBC8	YEL012W	LEM3	P42838	414 aa		5.31	□□□□□ -1.56
UBC8	YEL012W	CRF1	Q04930	467 aa		5.31	□□□□□ -1.56
UBC8	YEL012W	TDA5	Q06417	326 aa	Known RBP	5.31	□□□□□ -1.56

Retrieved 100 of 5,963 RNA–protein pairs in 69.6 ms