RNA–Protein interactions for RNA: YDR120C

TRM1, Transcript of tRNA methyltransferase, yeast

Gene TRM1, Length 1,713 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRM1	YDR120C	SNF5	P18480	905 aa		5.66	□□□□□ -1.5
TRM1	YDR120C	BET3	P36149	193 aa		5.66	□□□□□ -1.5
TRM1	YDR120C	BAP2	P38084	609 aa		5.66	□□□□□ -1.5
TRM1	YDR120C	TAT1	P38085	619 aa		5.66	□□□□□ -1.5
TRM1	YDR120C	SKN7	P38889	622 aa		5.66	□□□□□ -1.5
TRM1	YDR120C	CCC2	P38995	1004 aa		5.66	□□□□□ -1.5
TRM1	YDR120C	GEM1	P39722	662 aa		5.66	□□□□□ -1.5
TRM1	YDR120C	YFL054C	P43549	646 aa		5.66	□□□□□ -1.5
TRM1	YDR120C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	5.66	□□□□□ -1.5	not detected
TRM1	YDR120C	YDL124W	Q07551	312 aa	Known RBP	5.66	□□□□□ -1.5
TRM1	YDR120C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	5.66	□□□□□ -1.5	not detected
TRM1	YDR120C	HBN1	Q96VH4	193 aa		5.66	□□□□□ -1.5
TRM1	YDR120C	SLA2	P33338	968 aa		5.65	□□□□□ -1.5
TRM1	YDR120C	PGM1	P33401	570 aa	Known RBP	5.65	□□□□□ -1.5
TRM1	YDR120C	DUS3	Q06053	668 aa	Known RBP	5.65	□□□□□ -1.5
TRM1	YDR120C	SKI3	P17883	1432 aa	Known RBP	5.65	□□□□□ -1.51
TRM1	YDR120C	AAR2	P32357	355 aa	Predicted RBP	5.65	□□□□□ -1.51
TRM1	YDR120C	CDC11	P32458	415 aa		5.65	□□□□□ -1.51
TRM1	YDR120C	WHI3	P34761	661 aa	Known RBP	5.65	□□□□□ -1.51
TRM1	YDR120C	UGA2	P38067	497 aa		5.65	□□□□□ -1.51
TRM1	YDR120C	SAF1	P38352	637 aa		5.65	□□□□□ -1.51
TRM1	YDR120C	FPR3	P38911	411 aa	Known RBP	5.65	□□□□□ -1.51
TRM1	YDR120C	SIT1	P39980	628 aa		5.65	□□□□□ -1.51
TRM1	YDR120C	CIT3	P43635	486 aa		5.65	□□□□□ -1.51
TRM1	YDR120C	TPO2	P53283	614 aa		5.65	□□□□□ -1.51
TRM1	YDR120C	RCL1	Q08096	367 aa	Predicted RBP	5.65	□□□□□ -1.51
TRM1	YDR120C	TAF2	P23255	1407 aa		5.64	□□□□□ -1.51
TRM1	YDR120C	COQ4	O13525	335 aa		5.64	□□□□□ -1.51
TRM1	YDR120C	SAM35	P14693	329 aa		5.64	□□□□□ -1.51
TRM1	YDR120C	YHL012W	P38709	493 aa		5.64	□□□□□ -1.51
TRM1	YDR120C	ICP55	P40051	511 aa		5.64	□□□□□ -1.51
TRM1	YDR120C	YOR059C	Q08448	450 aa	Known RBP	5.64	□□□□□ -1.51
TRM1	YDR120C	TOP3	P13099	656 aa		5.63	□□□□□ -1.51
TRM1	YDR120C	THI4	P32318	326 aa		5.63	□□□□□ -1.51
TRM1	YDR120C	MCA1	Q08601	432 aa		5.63	□□□□□ -1.51
TRM1	YDR120C	SRO9	P25567	434 aa	Known RBP	5.62	□□□□□ -1.51
TRM1	YDR120C	PRO1	P32264	428 aa		5.62	□□□□□ -1.51
TRM1	YDR120C	CDC12	P32468	407 aa	Known RBP	5.62	□□□□□ -1.51
TRM1	YDR120C	YKL151C	P36059	337 aa		5.62	□□□□□ -1.51
TRM1	YDR120C	YBR284W	P38150	797 aa		5.62	□□□□□ -1.51
TRM1	YDR120C	SRP1	Q02821	542 aa	Known RBP	5.62	□□□□□ -1.51
TRM1	YDR120C	POB3	Q04636	552 aa	Known RBP	5.62	□□□□□ -1.51
TRM1	YDR120C	HRQ1	Q05549	1077 aa		5.62	□□□□□ -1.51
TRM1	YDR120C	PPH3	P32345	308 aa		5.62	□□□□□ -1.51
TRM1	YDR120C	SCT1	P32784	759 aa		5.62	□□□□□ -1.51
TRM1	YDR120C	CCZ1	P38273	704 aa		5.62	□□□□□ -1.51
TRM1	YDR120C	PIK1	P39104	1066 aa		5.62	□□□□□ -1.51
TRM1	YDR120C	MNN1	P39106	762 aa		5.62	□□□□□ -1.51
TRM1	YDR120C	OYE3	P41816	400 aa	Predicted RBP	5.62	□□□□□ -1.51
TRM1	YDR120C	RCM1	P53972	490 aa		5.62	□□□□□ -1.51
TRM1	YDR120C	YPL034W	Q03083	165 aa		5.62	□□□□□ -1.51
TRM1	YDR120C	THS1	P04801	734 aa	Known RBP	5.61	□□□□□ -1.51
TRM1	YDR120C	COQ2	P32378	372 aa		5.61	□□□□□ -1.51
TRM1	YDR120C	MDL2	P33311	773 aa		5.61	□□□□□ -1.51
TRM1	YDR120C	PET10	P36139	283 aa		5.61	□□□□□ -1.51
TRM1	YDR120C	YPR071W	Q12346	211 aa		5.61	□□□□□ -1.51
TRM1	YDR120C	SSN2	P38931	1420 aa		5.61	□□□□□ -1.51
TRM1	YDR120C	YCF1	P39109	1515 aa	Known RBP	5.6	□□□□□ -1.51
TRM1	YDR120C	ADE8	P04161	214 aa		5.6	□□□□□ -1.51
TRM1	YDR120C	MSD1	P15179	658 aa	Known RBP	5.6	□□□□□ -1.51
TRM1	YDR120C	AFR1	P33304	620 aa		5.6	□□□□□ -1.51
TRM1	YDR120C	SAH1	P39954	449 aa	Known RBP	5.6	□□□□□ -1.51
TRM1	YDR120C	UBP6	P43593	499 aa	Known RBP	5.6	□□□□□ -1.51
TRM1	YDR120C	BUL2	Q03758	920 aa	Known RBP	5.6	□□□□□ -1.51
TRM1	YDR120C	YLL058W	Q12198	575 aa		5.6	□□□□□ -1.51
TRM1	YDR120C	YLR122C	Q12312	125 aa		5.6	□□□□□ -1.51
TRM1	YDR120C	BI4	P03879	638 aa		5.6	□□□□□ -1.51
TRM1	YDR120C	TOM70	P07213	617 aa	Known RBP	5.6	□□□□□ -1.51
TRM1	YDR120C	CHS2	P14180	963 aa		5.6	□□□□□ -1.51
TRM1	YDR120C	MSB1	P21339	1137 aa	Known RBP	5.6	□□□□□ -1.51
TRM1	YDR120C	MSH2	P25847	964 aa		5.6	□□□□□ -1.51
TRM1	YDR120C	PEX7	P39108	375 aa		5.6	□□□□□ -1.51
TRM1	YDR120C	GDH3	P39708	457 aa		5.6	□□□□□ -1.51
TRM1	YDR120C	HSV2	P50079	448 aa	Predicted RBP	5.6	□□□□□ -1.51
TRM1	YDR120C	MAL11	P53048	616 aa		5.6	□□□□□ -1.51
TRM1	YDR120C	SSK2	P53599	1579 aa		5.59	□□□□□ -1.51
TRM1	YDR120C	DOM34	P33309	386 aa		5.59	□□□□□ -1.51
TRM1	YDR120C	YRO2	P38079	344 aa		5.59	□□□□□ -1.51
TRM1	YDR120C	LCD1	Q04377	747 aa		5.59	□□□□□ -1.51
TRM1	YDR120C	RSC58	Q07979	502 aa		5.59	□□□□□ -1.51
TRM1	YDR120C	TRE1	Q08919	783 aa		5.59	□□□□□ -1.51
TRM1	YDR120C	SIN3	P22579	1536 aa		5.59	□□□□□ -1.52
TRM1	YDR120C	NPP1	P25353	742 aa		5.58	□□□□□ -1.52
TRM1	YDR120C	MTC3	P53077	123 aa		5.58	□□□□□ -1.52
TRM1	YDR120C	UTP14	Q04500	899 aa	Known RBP	5.58	□□□□□ -1.52
TRM1	YDR120C	MDM38	Q08179	573 aa		5.58	□□□□□ -1.52
TRM1	YDR120C	NBA1	Q08229	501 aa	Known RBP	5.58	□□□□□ -1.52
TRM1	YDR120C	PUS1	Q12211	544 aa	Known RBP	5.58	□□□□□ -1.52
TRM1	YDR120C	ATG13	Q06628	738 aa		5.57	□□□□□ -1.52
TRM1	YDR120C	ACE2	P21192	770 aa		5.57	□□□□□ -1.52
TRM1	YDR120C	KAE1	P36132	386 aa		5.57	□□□□□ -1.52
TRM1	YDR120C	ERT1	P38140	529 aa		5.57	□□□□□ -1.52
TRM1	YDR120C	TOK1	P40310	691 aa		5.57	□□□□□ -1.52
TRM1	YDR120C	RRT14	P40470	206 aa		5.57	□□□□□ -1.52
TRM1	YDR120C	NTG2	Q08214	380 aa		5.57	□□□□□ -1.52
TRM1	YDR120C	RSB1	Q08417	382 aa		5.57	□□□□□ -1.52
TRM1	YDR120C	YJR142W	P47173	342 aa		5.56	□□□□□ -1.52
TRM1	YDR120C	UGO1	Q03327	502 aa		5.56	□□□□□ -1.52
TRM1	YDR120C	NOP14	Q99207	810 aa	Known RBP	5.56	□□□□□ -1.52
TRM1	YDR120C	YKR078W	P36158	585 aa	Known RBP	5.55	□□□□□ -1.52

Retrieved 100 of 5,963 RNA–protein pairs in 18.1 ms