RNA–Protein interactions for RNA: YDL122W

UBP1, Transcript of Ubiquitin-specific protease, yeast

Gene UBP1, Length 2,430 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP1	YDL122W	YML083C	Q04526	418 aa		2.76	□□□□□ -1.97
UBP1	YDL122W	PUP1	P25043	261 aa		2.76	□□□□□ -1.97
UBP1	YDL122W	CDC48	P25694	835 aa	Known RBP	2.76	□□□□□ -1.97
UBP1	YDL122W	AAD14	P42884	376 aa		2.76	□□□□□ -1.97
UBP1	YDL122W	RSM26	P47141	266 aa		2.76	□□□□□ -1.97
UBP1	YDL122W	PIB2	P53191	635 aa		2.76	□□□□□ -1.97
UBP1	YDL122W	YNR061C	P53747	219 aa		2.76	□□□□□ -1.97
UBP1	YDL122W	ESF1	Q06344	628 aa	Known RBP	2.76	□□□□□ -1.97
UBP1	YDL122W	MYO1	P08964	1928 aa		2.75	□□□□□ -1.97
UBP1	YDL122W	SUP45	P12385	437 aa	Known RBP	2.75	□□□□□ -1.97
UBP1	YDL122W	MIC60	P36112	540 aa		2.75	□□□□□ -1.97
UBP1	YDL122W	PEX28	P38848	579 aa		2.75	□□□□□ -1.97
UBP1	YDL122W	LSB6	P42951	607 aa		2.75	□□□□□ -1.97
UBP1	YDL122W	LSC2	P53312	427 aa		2.75	□□□□□ -1.97
UBP1	YDL122W	SOL4	P53315	255 aa		2.75	□□□□□ -1.97
UBP1	YDL122W	HEF3	P53978	1044 aa	Known RBP	2.75	□□□□□ -1.97
UBP1	YDL122W	TRM11	Q12463	433 aa		2.75	□□□□□ -1.97
UBP1	YDL122W	PRP8	P33334	2413 aa	Known RBP	2.75	□□□□□ -1.97
UBP1	YDL122W	HIS5	P07172	385 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	MAK16	P10962	306 aa	Predicted RBP	2.74	□□□□□ -1.97
UBP1	YDL122W	TEC1	P18412	486 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	SFP1	P32432	683 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	ASF1	P32447	279 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	SUV3	P32580	737 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	UBP12	P39538	1254 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	SCW11	P53189	542 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	NAF1	P53919	492 aa	Known RBP	2.74	□□□□□ -1.97
UBP1	YDL122W	UBP2	Q01476	1272 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	RMD1	Q03441	430 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	VPS13	Q07878	3144 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	ENO1	P00924	437 aa	Known RBP	2.74	□□□□□ -1.97
UBP1	YDL122W	STE4	P18851	423 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	SPT5	P27692	1063 aa	Known RBP	2.74	□□□□□ -1.97
UBP1	YDL122W	UTR4	P32626	227 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	BUD2	P33314	1104 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	TFC4	P33339	1025 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	LEU5	P38702	357 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	CSM2	P40465	213 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	YDL124W	Q07551	312 aa	Known RBP	2.74	□□□□□ -1.97
UBP1	YDL122W	WHI4	Q07655	649 aa	Known RBP	2.74	□□□□□ -1.97
UBP1	YDL122W	GUD1	Q07729	489 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	TY1A-BL	Q12266	440 aa		2.74	□□□□□ -1.97
UBP1	YDL122W	ENO2	P00925	437 aa	Known RBP	2.73	□□□□□ -1.97
UBP1	YDL122W	YJR008W	P47085	338 aa		2.73	□□□□□ -1.97
UBP1	YDL122W	CSL4	P53859	292 aa	Predicted RBP	2.73	□□□□□ -1.97
UBP1	YDL122W	SNF1	P06782	633 aa	Known RBP	2.73	□□□□□ -1.97
UBP1	YDL122W	SNF3	P10870	884 aa		2.73	□□□□□ -1.97
UBP1	YDL122W	FUS1	P11710	512 aa		2.73	□□□□□ -1.97
UBP1	YDL122W	APE1	P14904	514 aa		2.73	□□□□□ -1.97
UBP1	YDL122W	MKS1	P34072	584 aa		2.73	□□□□□ -1.97
UBP1	YDL122W	TGL4	P36165	910 aa		2.73	□□□□□ -1.97
UBP1	YDL122W	PPE1	P38796	400 aa		2.73	□□□□□ -1.97
UBP1	YDL122W	YJR098C	P47139	656 aa		2.73	□□□□□ -1.97
UBP1	YDL122W	MSC2	Q03455	724 aa		2.73	□□□□□ -1.97
UBP1	YDL122W	SEC20	P28791	383 aa		2.72	□□□□□ -1.97
UBP1	YDL122W	GUT2	P32191	649 aa		2.72	□□□□□ -1.97
UBP1	YDL122W	FAF1	P40546	346 aa	Predicted RBP	2.72	□□□□□ -1.97
UBP1	YDL122W	SBE2	P42223	864 aa	Known RBP	2.72	□□□□□ -1.97
UBP1	YDL122W	HDA1	P53973	706 aa		2.72	□□□□□ -1.97
UBP1	YDL122W	SLD5	Q03406	294 aa		2.72	□□□□□ -1.97
UBP1	YDL122W	MRX10	Q05648	414 aa		2.72	□□□□□ -1.97
UBP1	YDL122W	STE6	P12866	1290 aa		2.72	□□□□□ -1.97
UBP1	YDL122W	FBP26	P32604	452 aa		2.72	□□□□□ -1.97
UBP1	YDL122W	ECM32	P32644	1121 aa	Known RBP	2.72	□□□□□ -1.97
UBP1	YDL122W	YKL097C	P34245	136 aa		2.72	□□□□□ -1.97
UBP1	YDL122W	SLX1	P38324	304 aa		2.72	□□□□□ -1.97
UBP1	YDL122W	TVP23	P38962	199 aa		2.72	□□□□□ -1.97
UBP1	YDL122W	RIM21	P48565	533 aa		2.72	□□□□□ -1.97
UBP1	YDL122W	YNL050C	P53952	270 aa		2.72	□□□□□ -1.97
UBP1	YDL122W	YLR455W	Q06188	304 aa		2.72	□□□□□ -1.97
UBP1	YDL122W	MNL2	Q12205	849 aa		2.72	□□□□□ -1.97
UBP1	YDL122W	FMP27	Q06179	2628 aa		2.72	□□□□□ -1.97
UBP1	YDL122W	MRPL7	P36519	292 aa		2.71	□□□□□ -1.98
UBP1	YDL122W	PCF11	P39081	626 aa	Predicted RBP	2.71	□□□□□ -1.98
UBP1	YDL122W	PES4	P39684	611 aa		2.71	□□□□□ -1.98
UBP1	YDL122W	YIR007W	P40566	764 aa		2.71	□□□□□ -1.98
UBP1	YDL122W	YAT1	P80235	687 aa		2.71	□□□□□ -1.98
UBP1	YDL122W	FRA1	Q07825	749 aa		2.71	□□□□□ -1.98
UBP1	YDL122W	BDS1	Q08347	646 aa		2.71	□□□□□ -1.98
UBP1	YDL122W	YBL113C	Q7M4S9	792 aa		2.71	□□□□□ -1.98
UBP1	YDL122W	APM2	P38700	605 aa		2.71	□□□□□ -1.98
UBP1	YDL122W	BFA1	P47113	574 aa		2.71	□□□□□ -1.98
UBP1	YDL122W	PAP2	P53632	584 aa	Known RBP	2.71	□□□□□ -1.98
UBP1	YDL122W	DFG5	Q05031	458 aa		2.71	□□□□□ -1.98
UBP1	YDL122W	PSH1	Q12161	406 aa		2.71	□□□□□ -1.98
UBP1	YDL122W	ERP3	Q12403	225 aa		2.71	□□□□□ -1.98
UBP1	YDL122W	RIF1	P29539	1916 aa		2.71	□□□□□ -1.98
UBP1	YDL122W	PRC1	P00729	532 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	RPP2B	P02400	110 aa	Known RBP	2.7	□□□□□ -1.98
UBP1	YDL122W	HMG2	P12684	1045 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	SLA1	P32790	1244 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	COY1	P34237	679 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	PTI1	P39927	425 aa	Predicted RBP	2.7	□□□□□ -1.98
UBP1	YDL122W	MAM1	P40065	302 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	YFL052W	P43551	465 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	YPP1	P46951	817 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	VTC4	P47075	721 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	PIP2	P52960	996 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	ITC1	P53125	1264 aa		2.7	□□□□□ -1.98
UBP1	YDL122W	LIF1	P53150	421 aa		2.7	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms