RNA–Protein interactions for RNA: YBR278W

DPB3, Transcript of Third-largest subunit of DNA polymerase II (DNA polymerase epsilon), yeast

Gene DPB3, Length 606 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DPB3	YBR278W	HRK1	Q08732	759 aa	Known RBP	4.25	□□□□□ -1.73
DPB3	YBR278W	RPL11A	P0C0W9	174 aa	Known RBP	4.24	□□□□□ -1.73
DPB3	YBR278W	MEF1	P25039	761 aa		4.24	□□□□□ -1.73
DPB3	YBR278W	PPH3	P32345	308 aa		4.24	□□□□□ -1.73
DPB3	YBR278W	SMY2	P32909	740 aa	Known RBP	4.24	□□□□□ -1.73
DPB3	YBR278W	PET10	P36139	283 aa		4.24	□□□□□ -1.73
DPB3	YBR278W	RRM3	P38766	723 aa		4.24	□□□□□ -1.73
DPB3	YBR278W	YEN1	P40028	759 aa		4.24	□□□□□ -1.73
DPB3	YBR278W	UBP6	P43593	499 aa	Known RBP	4.24	□□□□□ -1.73
DPB3	YBR278W	YJL045W	P47052	634 aa		4.24	□□□□□ -1.73
DPB3	YBR278W	YJR008W	P47085	338 aa		4.24	□□□□□ -1.73
DPB3	YBR278W	TFB2	Q02939	513 aa		4.24	□□□□□ -1.73
DPB3	YBR278W	RPL11B	Q3E757	174 aa	Predicted RBP	4.24	□□□□□ -1.73
DPB3	YBR278W	AI3	P03877	415 aa		4.23	□□□□□ -1.73
DPB3	YBR278W	RET1	P22276	1149 aa	Known RBP	4.23	□□□□□ -1.73
DPB3	YBR278W	DBP2	P24783	546 aa	Known RBP	4.23	□□□□□ -1.73
DPB3	YBR278W	SFP1	P32432	683 aa		4.23	□□□□□ -1.73
DPB3	YBR278W	CDC12	P32468	407 aa	Known RBP	4.23	□□□□□ -1.73
DPB3	YBR278W	PEX6	P33760	1030 aa		4.23	□□□□□ -1.73
DPB3	YBR278W	NNK1	P36003	928 aa		4.23	□□□□□ -1.73
DPB3	YBR278W	OMA1	P36163	345 aa		4.23	□□□□□ -1.73
DPB3	YBR278W	GEM1	P39722	662 aa		4.23	□□□□□ -1.73
DPB3	YBR278W	RPN3	P40016	523 aa	Known RBP	4.23	□□□□□ -1.73
DPB3	YBR278W	ZDS1	P50111	915 aa	Known RBP	4.23	□□□□□ -1.73
DPB3	YBR278W	DOM34	P33309	386 aa		4.22	□□□□□ -1.73
DPB3	YBR278W	MXR1	P40029	184 aa		4.22	□□□□□ -1.73
DPB3	YBR278W	NCE103	P53615	221 aa		4.22	□□□□□ -1.73
DPB3	YBR278W	YNR029C	P53729	429 aa	Known RBP	4.22	□□□□□ -1.73
DPB3	YBR278W	BUL2	Q03758	920 aa	Known RBP	4.22	□□□□□ -1.73
DPB3	YBR278W	ACM1	Q08981	209 aa		4.22	□□□□□ -1.73
DPB3	YBR278W	TY1A-NL1	Q12391	440 aa	Known RBP	4.22	□□□□□ -1.73
DPB3	YBR278W	MDM12	Q92328	271 aa		4.22	□□□□□ -1.73
DPB3	YBR278W	AFR1	P33304	620 aa		4.21	□□□□□ -1.74
DPB3	YBR278W	SLA2	P33338	968 aa		4.21	□□□□□ -1.74
DPB3	YBR278W	GPT2	P36148	743 aa		4.21	□□□□□ -1.74
DPB3	YBR278W	ERT1	P38140	529 aa		4.21	□□□□□ -1.74
DPB3	YBR278W	NMD3	P38861	518 aa	Known RBP	4.21	□□□□□ -1.74
DPB3	YBR278W	DSS1	P39112	969 aa		4.21	□□□□□ -1.74
DPB3	YBR278W	ALG2	P43636	503 aa		4.21	□□□□□ -1.74
DPB3	YBR278W	ALT1	P52893	592 aa		4.21	□□□□□ -1.74
DPB3	YBR278W	TPP1	Q03796	238 aa		4.21	□□□□□ -1.74
DPB3	YBR278W	LCD1	Q04377	747 aa		4.21	□□□□□ -1.74
DPB3	YBR278W	HRQ1	Q05549	1077 aa		4.21	□□□□□ -1.74
DPB3	YBR278W	ATG13	Q06628	738 aa		4.21	□□□□□ -1.74
DPB3	YBR278W	GAS5	Q08193	484 aa		4.21	□□□□□ -1.74
DPB3	YBR278W	YPR071W	Q12346	211 aa		4.21	□□□□□ -1.74
DPB3	YBR278W	GSY1	P23337	708 aa		4.2	□□□□□ -1.74
DPB3	YBR278W	PRO1	P32264	428 aa		4.2	□□□□□ -1.74
DPB3	YBR278W	COQ2	P32378	372 aa		4.2	□□□□□ -1.74
DPB3	YBR278W	SFA1	P32771	386 aa		4.2	□□□□□ -1.74
DPB3	YBR278W	YRO2	P38079	344 aa		4.2	□□□□□ -1.74
DPB3	YBR278W	TOK1	P40310	691 aa		4.2	□□□□□ -1.74
DPB3	YBR278W	YFL054C	P43549	646 aa		4.2	□□□□□ -1.74
DPB3	YBR278W	ATG36	P46983	293 aa		4.2	□□□□□ -1.74
DPB3	YBR278W	ARI1	P53111	347 aa	Known RBP	4.2	□□□□□ -1.74
DPB3	YBR278W	SRP1	Q02821	542 aa	Known RBP	4.2	□□□□□ -1.74
DPB3	YBR278W	YLR001C	Q07895	862 aa		4.2	□□□□□ -1.74
DPB3	YBR278W	PUS7	Q08647	676 aa	Known RBP	4.2	□□□□□ -1.74
DPB3	YBR278W	GLT1	Q12680	2145 aa	Known RBP	4.2	□□□□□ -1.74
DPB3	YBR278W	NUP145	P49687	1317 aa		4.2	□□□□□ -1.74
DPB3	YBR278W	ADE8	P04161	214 aa		4.19	□□□□□ -1.74
DPB3	YBR278W	SNF5	P18480	905 aa		4.19	□□□□□ -1.74
DPB3	YBR278W	RAD53	P22216	821 aa		4.19	□□□□□ -1.74
DPB3	YBR278W	NPP1	P25353	742 aa		4.19	□□□□□ -1.74
DPB3	YBR278W	UGA2	P38067	497 aa		4.19	□□□□□ -1.74
DPB3	YBR278W	HLJ1	P48353	224 aa		4.19	□□□□□ -1.74
DPB3	YBR278W	TNA1	P53322	534 aa		4.19	□□□□□ -1.74
DPB3	YBR278W	YNL193W	P53870	558 aa		4.19	□□□□□ -1.74
DPB3	YBR278W	COQ4	O13525	335 aa		4.18	□□□□□ -1.74
DPB3	YBR278W	VBA3	P25594	458 aa		4.18	□□□□□ -1.74
DPB3	YBR278W	RSC6	P25632	483 aa		4.18	□□□□□ -1.74
DPB3	YBR278W	YSC84	P32793	468 aa		4.18	□□□□□ -1.74
DPB3	YBR278W	SPC29	P33419	253 aa		4.18	□□□□□ -1.74
DPB3	YBR278W	YKL151C	P36059	337 aa		4.18	□□□□□ -1.74
DPB3	YBR278W	PAF1	P38351	445 aa		4.18	□□□□□ -1.74
DPB3	YBR278W	SAH1	P39954	449 aa	Known RBP	4.18	□□□□□ -1.74
DPB3	YBR278W	SEC26	P41810	973 aa	Known RBP	4.18	□□□□□ -1.74
DPB3	YBR278W	PMT3	P47190	753 aa		4.18	□□□□□ -1.74
DPB3	YBR278W	YGR237C	P50089	785 aa		4.18	□□□□□ -1.74
DPB3	YBR278W	INP52	P50942	1183 aa		4.18	□□□□□ -1.74
DPB3	YBR278W	RTS3	P53289	263 aa		4.18	□□□□□ -1.74
DPB3	YBR278W	HOS3	Q02959	697 aa	Known RBP	4.18	□□□□□ -1.74
DPB3	YBR278W	BI4	P03879	638 aa		4.17	□□□□□ -1.74
DPB3	YBR278W	THS1	P04801	734 aa	Known RBP	4.17	□□□□□ -1.74
DPB3	YBR278W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
DPB3	YBR278W	RPS4A	P0CX35	261 aa	Known RBP	4.17	□□□□□ -1.74
DPB3	YBR278W	RPS4B	P0CX36	261 aa	Known RBP	4.17	□□□□□ -1.74
DPB3	YBR278W	MRC1	P25588	1096 aa		4.17	□□□□□ -1.74
DPB3	YBR278W	KAE1	P36132	386 aa		4.17	□□□□□ -1.74
DPB3	YBR278W	BAP2	P38084	609 aa		4.17	□□□□□ -1.74
DPB3	YBR278W	GYP8	P43570	497 aa		4.17	□□□□□ -1.74
DPB3	YBR278W	CCM1	P48237	864 aa	Predicted RBP	4.17	□□□□□ -1.74
DPB3	YBR278W	SDA1	P53313	767 aa	Known RBP	4.17	□□□□□ -1.74
DPB3	YBR278W	YLL058W	Q12198	575 aa		4.17	□□□□□ -1.74
DPB3	YBR278W	CDC9	P04819	755 aa		4.16	□□□□□ -1.74
DPB3	YBR278W	SRD1	P09007	221 aa		4.16	□□□□□ -1.74
DPB3	YBR278W	REC104	P33323	182 aa		4.16	□□□□□ -1.74
DPB3	YBR278W	PGM1	P33401	570 aa	Known RBP	4.16	□□□□□ -1.74
DPB3	YBR278W	YKR078W	P36158	585 aa	Known RBP	4.16	□□□□□ -1.74
DPB3	YBR278W	CCZ1	P38273	704 aa		4.16	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 60.9 ms