RNA–Protein interactions for RNA: ENST00000564899.1

SF3B3-205, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-205ENST00000564899 NKX1-1Q15270 411 aaPredicted RBP14.34□□□□□ -0.11
SF3B3-205ENST00000564899 TAF7Q15545 349 aaPredicted RBP14.34□□□□□ -0.11
SF3B3-205ENST00000564899 EXOSC9Q06265 439 aaKnown RBP14.33□□□□□ -0.12
SF3B3-205ENST00000564899 BABAM1Q9NWV8 329 aa14.33□□□□□ -0.12
SF3B3-205ENST00000564899 RCAN3Q9UKA8 241 aa14.33□□□□□ -0.12
SF3B3-205ENST00000564899 MRC1P22897 1456 aa14.32□□□□□ -0.12
SF3B3-205ENST00000564899 KIF3CO14782 793 aa14.32□□□□□ -0.12
SF3B3-205ENST00000564899 SLC52A2Q9HAB3 445 aa14.32□□□□□ -0.12
SF3B3-205ENST00000564899 MIS18AQ9NYP9 233 aa14.32□□□□□ -0.12
SF3B3-205ENST00000564899 C4BP0C0L5 1744 aa14.32□□□□□ -0.12
SF3B3-205ENST00000564899 CABP4P57796 275 aa14.31□□□□□ -0.12
SF3B3-205ENST00000564899 CD2APQ9Y5K6 639 aa14.31□□□□□ -0.12
SF3B3-205ENST00000564899 UBR3Q6ZT12 1888 aa14.31□□□□□ -0.12
SF3B3-205ENST00000564899 BTBD11A6QL63 1104 aa14.3□□□□□ -0.12
SF3B3-205ENST00000564899 CT47B1P0C2W7 299 aaPredicted RBP14.3□□□□□ -0.12
SF3B3-205ENST00000564899 PALLDQ8WX93 1383 aa14.3□□□□□ -0.12
SF3B3-205ENST00000564899 SCN11AQ9UI33 1791 aa14.29□□□□□ -0.12
SF3B3-205ENST00000564899 ERVV-2B6SEH9 535 aa14.29□□□□□ -0.12
SF3B3-205ENST00000564899 PHF14O94880 888 aa14.29□□□□□ -0.12
SF3B3-205ENST00000564899 NFATC2IPQ8NCF5 419 aa14.29□□□□□ -0.12
SF3B3-205ENST00000564899 ITGB4P16144 1822 aa14.28□□□□□ -0.12
SF3B3-205ENST00000564899 C8orf58Q8NAV2 365 aa14.28□□□□□ -0.12
SF3B3-205ENST00000564899 KIAA1551Q9HCM1 1747 aa14.28□□□□□ -0.12
SF3B3-205ENST00000564899 SUPT16HQ9Y5B9 1047 aaKnown RBP14.28□□□□□ -0.12
SF3B3-205ENST00000564899 TWISTNBQ3B726 338 aaPredicted RBP14.27□□□□□ -0.13
SF3B3-205ENST00000564899 TSPYL6Q8N831 410 aa14.27□□□□□ -0.13
SF3B3-205ENST00000564899 CICQ96RK0 1608 aaPredicted RBP14.26□□□□□ -0.13
SF3B3-205ENST00000564899 ELL2O00472 640 aaPredicted RBP14.26□□□□□ -0.13
SF3B3-205ENST00000564899 KCNQ3O43525 872 aa14.26□□□□□ -0.13
SF3B3-205ENST00000564899 RARSP54136 660 aaKnown RBP14.26□□□□□ -0.13
SF3B3-205ENST00000564899 KRT24Q2M2I5 525 aa14.26□□□□□ -0.13
SF3B3-205ENST00000564899 TMOD3Q9NYL9 352 aa14.26□□□□□ -0.13
SF3B3-205ENST00000564899 SIPA1L3O60292 1781 aaPredicted RBP14.26□□□□□ -0.13
SF3B3-205ENST00000564899 VIRMAQ69YN4 1812 aaKnown RBP14.25□□□□□ -0.13
SF3B3-205ENST00000564899 KDM3BQ7LBC6 1761 aa14.25□□□□□ -0.13
SF3B3-205ENST00000564899 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.25□□□□□ -0.13
SF3B3-205ENST00000564899 VAMP4O75379 141 aa14.25□□□□□ -0.13
SF3B3-205ENST00000564899 EIF4A1P60842 406 aaKnown RBP14.25□□□□□ -0.13
SF3B3-205ENST00000564899 HTRA3P83110 453 aa14.25□□□□□ -0.13
SF3B3-205ENST00000564899 ZNF790Q6PG37 636 aa14.25□□□□□ -0.13
SF3B3-205ENST00000564899 TTC5Q8N0Z6 440 aa14.25□□□□□ -0.13
SF3B3-205ENST00000564899 DNAJC5GQ8N7S2 189 aa14.25□□□□□ -0.13
SF3B3-205ENST00000564899 ZNF428Q96B54 188 aa14.25□□□□□ -0.13
SF3B3-205ENST00000564899 SLC39A6Q13433 755 aa14.24□□□□□ -0.13
SF3B3-205ENST00000564899 LINC00116Q8NCU8 138 aa14.24□□□□□ -0.13
SF3B3-205ENST00000564899 N4BP2Q86UW6 1770 aaPredicted RBP14.24□□□□□ -0.13
SF3B3-205ENST00000564899 PXDNLA1KZ92 1463 aa14.24□□□□□ -0.13
SF3B3-205ENST00000564899 SOS1Q07889 1333 aaPredicted RBP14.23□□□□□ -0.13
SF3B3-205ENST00000564899 RNF123Q5XPI4 1314 aa14.23□□□□□ -0.13
SF3B3-205ENST00000564899 RRP1P56182 461 aaKnown RBP14.23□□□□□ -0.13
SF3B3-205ENST00000564899 PIGBQ92521 554 aa14.23□□□□□ -0.13
SF3B3-205ENST00000564899 AK7Q96M32 723 aa14.23□□□□□ -0.13
SF3B3-205ENST00000564899 SMC4Q9NTJ3 1288 aa14.23□□□□□ -0.13
SF3B3-205ENST00000564899 BCAR3O75815 825 aa14.22□□□□□ -0.13
SF3B3-205ENST00000564899 NEFLP07196 543 aa14.22□□□□□ -0.13
SF3B3-205ENST00000564899 HOXB7P09629 217 aa14.22□□□□□ -0.13
SF3B3-205ENST00000564899 ALDH1L2Q3SY69 923 aa14.22□□□□□ -0.13
SF3B3-205ENST00000564899 SSH1Q8WYL5 1049 aa14.22□□□□□ -0.13
SF3B3-205ENST00000564899 BCL2L13Q9BXK5 485 aa14.22□□□□□ -0.13
SF3B3-205ENST00000564899 NMRK2Q9NPI5 230 aa14.22□□□□□ -0.13
SF3B3-205ENST00000564899 ITPK1Q13572 414 aa14.21□□□□□ -0.13
SF3B3-205ENST00000564899 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.21□□□□□ -0.13
SF3B3-205ENST00000564899 HEG1Q9ULI3 1381 aa14.21□□□□□ -0.14
SF3B3-205ENST00000564899 KIF13BQ9NQT8 1826 aa14.2□□□□□ -0.14
SF3B3-205ENST00000564899 CANXP27824 592 aaKnown RBP14.2□□□□□ -0.14
SF3B3-205ENST00000564899 FLAD1Q8NFF5 587 aa14.2□□□□□ -0.14
SF3B3-205ENST00000564899 ZNF496Q96IT1 587 aaPredicted RBP14.2□□□□□ -0.14
SF3B3-205ENST00000564899 FMNL2Q96PY5 1086 aa14.2□□□□□ -0.14
SF3B3-205ENST00000564899 WDR90Q96KV7 1748 aa14.19□□□□□ -0.14
SF3B3-205ENST00000564899 TCERG1O14776 1098 aaKnown RBP14.19□□□□□ -0.14
SF3B3-205ENST00000564899 HDGFL1Q5TGJ6 251 aa14.19□□□□□ -0.14
SF3B3-205ENST00000564899 A0A0G2JLW4 131 aa14.18□□□□□ -0.14
SF3B3-205ENST00000564899 PLIN1O60240 522 aa14.18□□□□□ -0.14
SF3B3-205ENST00000564899 MMP10P09238 476 aa14.18□□□□□ -0.14
SF3B3-205ENST00000564899 APLP1P51693 650 aa14.18□□□□□ -0.14
SF3B3-205ENST00000564899 COL13A1Q5TAT6 717 aaPredicted RBP14.18□□□□□ -0.14
SF3B3-205ENST00000564899 CCDC30Q5VVM6 783 aa14.18□□□□□ -0.14
SF3B3-205ENST00000564899 MRPL50Q8N5N7 158 aaKnown RBP14.18□□□□□ -0.14
SF3B3-205ENST00000564899 FRAT1Q92837 279 aaPredicted RBP14.18□□□□□ -0.14
SF3B3-205ENST00000564899 CHMP4AQ9BY43 222 aa14.18□□□□□ -0.14
SF3B3-205ENST00000564899 ATG3Q9NT62 314 aa14.18□□□□□ -0.14
SF3B3-205ENST00000564899 ASAP1Q9ULH1 1129 aa14.18□□□□□ -0.14
SF3B3-205ENST00000564899 KCPQ6ZWJ8 1503 aa14.18□□□□□ -0.14
SF3B3-205ENST00000564899 KIF16BQ96L93 1317 aa14.17□□□□□ -0.14
SF3B3-205ENST00000564899 LOC102724428A0A0B4J2F2 783 aa14.17□□□□□ -0.14
SF3B3-205ENST00000564899 GNPATO15228 680 aa14.17□□□□□ -0.14
SF3B3-205ENST00000564899 SNRPA1P09661 255 aaKnown RBP14.17□□□□□ -0.14
SF3B3-205ENST00000564899 EIF2S2P20042 333 aaKnown RBP14.17□□□□□ -0.14
SF3B3-205ENST00000564899 SSFA2P28290 1259 aa14.17□□□□□ -0.14
SF3B3-205ENST00000564899 BRPF1P55201 1214 aaPredicted RBP14.17□□□□□ -0.14
SF3B3-205ENST00000564899 SIK1P57059 783 aa14.17□□□□□ -0.14
SF3B3-205ENST00000564899 IRX6P78412 446 aaPredicted RBP14.17□□□□□ -0.14
SF3B3-205ENST00000564899 NECTIN2Q92692 538 aa14.17□□□□□ -0.14
SF3B3-205ENST00000564899 STK31Q9BXU1 1019 aa14.17□□□□□ -0.14
SF3B3-205ENST00000564899 BRCA1P38398 1863 aaKnown RBP14.16□□□□□ -0.14
SF3B3-205ENST00000564899 PRAMEF22A3QJZ6 481 aa14.16□□□□□ -0.14
SF3B3-205ENST00000564899 PTCD1O75127 700 aaKnown RBP14.16□□□□□ -0.14
SF3B3-205ENST00000564899 BCS1LQ9Y276 419 aa14.16□□□□□ -0.14
SF3B3-205ENST00000564899 C10orf71Q711Q0 1435 aa14.15□□□□□ -0.14
SF3B3-205ENST00000564899 UBR2Q8IWV8 1755 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms