RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 RNF123Q5XPI4 1314 aa9.28□□□□□ -0.92
NUP54-204ENST00000506098 C4AP0C0L4 1744 aa9.28□□□□□ -0.92
NUP54-204ENST00000506098 C4BP0C0L5 1744 aa9.28□□□□□ -0.92
NUP54-204ENST00000506098 CASZ1Q86V15 1759 aa9.27□□□□□ -0.92
NUP54-204ENST00000506098 ELL2O00472 640 aaPredicted RBP9.27□□□□□ -0.93
NUP54-204ENST00000506098 PTF1AQ7RTS3 328 aa9.27□□□□□ -0.93
NUP54-204ENST00000506098 TEX13AQ9BXU3 409 aaPredicted RBP9.27□□□□□ -0.93
NUP54-204ENST00000506098 MYH3P11055 1940 aa9.27□□□□□ -0.93
NUP54-204ENST00000506098 PALLDQ8WX93 1383 aa9.26□□□□□ -0.93
NUP54-204ENST00000506098 CCDC30Q5VVM6 783 aa9.26□□□□□ -0.93
NUP54-204ENST00000506098 SSH1Q8WYL5 1049 aa9.26□□□□□ -0.93
NUP54-204ENST00000506098 SLC4A9Q96Q91 983 aa9.26□□□□□ -0.93
NUP54-204ENST00000506098 PRAMEF22A3QJZ6 481 aa9.25□□□□□ -0.93
NUP54-204ENST00000506098 PLSCR1O15162 318 aa9.25□□□□□ -0.93
NUP54-204ENST00000506098 PTCD1O75127 700 aaKnown RBP9.25□□□□□ -0.93
NUP54-204ENST00000506098 TRIM37O94972 964 aa9.25□□□□□ -0.93
NUP54-204ENST00000506098 MRPL50Q8N5N7 158 aaKnown RBP9.25□□□□□ -0.93
NUP54-204ENST00000506098 USP16Q9Y5T5 823 aa9.25□□□□□ -0.93
NUP54-204ENST00000506098 ERBB4Q15303 1308 aa9.25□□□□□ -0.93
NUP54-204ENST00000506098 LOC102724428A0A0B4J2F2 783 aa9.24□□□□□ -0.93
NUP54-204ENST00000506098 BCAR3O75815 825 aa9.24□□□□□ -0.93
NUP54-204ENST00000506098 SIK1P57059 783 aa9.24□□□□□ -0.93
NUP54-204ENST00000506098 PDIA6Q15084 440 aa9.24□□□□□ -0.93
NUP54-204ENST00000506098 HDGFL1Q5TGJ6 251 aa9.24□□□□□ -0.93
NUP54-204ENST00000506098 RBM42Q9BTD8 480 aaKnown RBP9.24□□□□□ -0.93
NUP54-204ENST00000506098 NPM3O75607 178 aaKnown RBP9.23□□□□□ -0.93
NUP54-204ENST00000506098 CYP19A1P11511 503 aaPredicted RBP9.23□□□□□ -0.93
NUP54-204ENST00000506098 EIF2S2P20042 333 aaKnown RBP9.23□□□□□ -0.93
NUP54-204ENST00000506098 LRP10Q7Z4F1 713 aa9.23□□□□□ -0.93
NUP54-204ENST00000506098 DNAJC10Q8IXB1 793 aa9.23□□□□□ -0.93
NUP54-204ENST00000506098 ARHGAP45Q92619 1136 aa9.23□□□□□ -0.93
NUP54-204ENST00000506098 DDX21Q9NR30 783 aaKnown RBP eCLIP9.23□□□□□ -0.93
NUP54-204ENST00000506098 SMC4Q9NTJ3 1288 aa9.23□□□□□ -0.93
NUP54-204ENST00000506098 DBF4Q9UBU7 674 aaPredicted RBP9.23□□□□□ -0.93
NUP54-204ENST00000506098 SUPT16HQ9Y5B9 1047 aaKnown RBP9.23□□□□□ -0.93
NUP54-204ENST00000506098 KIF16BQ96L93 1317 aa9.23□□□□□ -0.93
NUP54-204ENST00000506098 SCN7AQ01118 1682 aa9.23□□□□□ -0.93
NUP54-204ENST00000506098 STARD3NLO95772 234 aa9.22□□□□□ -0.93
NUP54-204ENST00000506098 SLC4A2P04920 1241 aa9.22□□□□□ -0.93
NUP54-204ENST00000506098 HMGB2P26583 209 aaKnown RBP9.22□□□□□ -0.93
NUP54-204ENST00000506098 ATP6V1AP38606 617 aa9.22□□□□□ -0.93
NUP54-204ENST00000506098 ITPK1Q13572 414 aa9.22□□□□□ -0.93
NUP54-204ENST00000506098 SLC27A3Q5K4L6 730 aa9.22□□□□□ -0.93
NUP54-204ENST00000506098 STK31Q9BXU1 1019 aa9.22□□□□□ -0.93
NUP54-204ENST00000506098 HYPKQ9NX55 129 aa9.22□□□□□ -0.93
NUP54-204ENST00000506098 RRP1P56182 461 aaKnown RBP9.21□□□□□ -0.94
NUP54-204ENST00000506098 RC3H1Q5TC82 1133 aaKnown RBP9.21□□□□□ -0.94
NUP54-204ENST00000506098 CCDC125Q86Z20 511 aa9.21□□□□□ -0.94
NUP54-204ENST00000506098 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.21□□□□□ -0.94
NUP54-204ENST00000506098 BCL2L13Q9BXK5 485 aa9.21□□□□□ -0.94
NUP54-204ENST00000506098 CHPF2Q9P2E5 772 aa9.21□□□□□ -0.94
NUP54-204ENST00000506098 PTPRCP08575 1304 aa9.21□□□□□ -0.94
NUP54-204ENST00000506098 NBPF26B4DH59 902 aa9.2□□□□□ -0.94
NUP54-204ENST00000506098 TCERG1O14776 1098 aaKnown RBP9.2□□□□□ -0.94
NUP54-204ENST00000506098 IPO8O15397 1037 aaKnown RBP9.2□□□□□ -0.94
NUP54-204ENST00000506098 APBA3O96018 575 aa9.2□□□□□ -0.94
NUP54-204ENST00000506098 A1BGP04217 495 aa9.2□□□□□ -0.94
NUP54-204ENST00000506098 NBPF14Q5TI25 921 aa9.2□□□□□ -0.94
NUP54-204ENST00000506098 ZKSCAN2Q63HK3 967 aa9.2□□□□□ -0.94
NUP54-204ENST00000506098 NBPF10Q6P3W6 841 aaKnown RBP9.2□□□□□ -0.94
NUP54-204ENST00000506098 INTS5Q6P9B9 1019 aaKnown RBP9.2□□□□□ -0.94
NUP54-204ENST00000506098 G2E3Q7L622 706 aa9.2□□□□□ -0.94
NUP54-204ENST00000506098 PROM2Q8N271 834 aa9.2□□□□□ -0.94
NUP54-204ENST00000506098 NBPF15Q8N660 670 aa9.2□□□□□ -0.94
NUP54-204ENST00000506098 NECTIN2Q92692 538 aa9.2□□□□□ -0.94
NUP54-204ENST00000506098 CCNL1Q9UK58 526 aaPredicted RBP9.2□□□□□ -0.94
NUP54-204ENST00000506098 NOB1Q9ULX3 412 aaKnown RBP9.2□□□□□ -0.94
NUP54-204ENST00000506098 CNTNAP4Q9C0A0 1308 aa9.2□□□□□ -0.94
NUP54-204ENST00000506098 PXDNLA1KZ92 1463 aa9.2□□□□□ -0.94
NUP54-204ENST00000506098 COL24A1Q17RW2 1714 aa9.19□□□□□ -0.94
NUP54-204ENST00000506098 LAMB2P55268 1798 aa9.19□□□□□ -0.94
NUP54-204ENST00000506098 MS4A1P11836 297 aa9.19□□□□□ -0.94
NUP54-204ENST00000506098 IL6STP40189 918 aaPredicted RBP9.19□□□□□ -0.94
NUP54-204ENST00000506098 CRKLP46109 303 aaKnown RBP9.19□□□□□ -0.94
NUP54-204ENST00000506098 FLIIQ13045 1269 aa9.19□□□□□ -0.94
NUP54-204ENST00000506098 PDE3AQ14432 1141 aa9.19□□□□□ -0.94
NUP54-204ENST00000506098 TXNRD1Q16881 649 aa9.19□□□□□ -0.94
NUP54-204ENST00000506098 PROSER3Q2NL68 480 aa9.19□□□□□ -0.94
NUP54-204ENST00000506098 ATF7IPQ6VMQ6 1270 aa9.19□□□□□ -0.94
NUP54-204ENST00000506098 LINC00116Q8NCU8 138 aa9.19□□□□□ -0.94
NUP54-204ENST00000506098 PHAXQ9H814 394 aaKnown RBP9.19□□□□□ -0.94
NUP54-204ENST00000506098 LRRC4BQ9NT99 713 aa9.19□□□□□ -0.94
NUP54-204ENST00000506098 CCDC87Q9NVE4 849 aa9.19□□□□□ -0.94
NUP54-204ENST00000506098 ABCC4O15439 1325 aa9.18□□□□□ -0.94
NUP54-204ENST00000506098 PLIN1O60240 522 aa9.18□□□□□ -0.94
NUP54-204ENST00000506098 ANXA1P04083 346 aa9.18□□□□□ -0.94
NUP54-204ENST00000506098 TRIM27P14373 513 aa9.18□□□□□ -0.94
NUP54-204ENST00000506098 EIF5P55010 431 aaKnown RBP9.18□□□□□ -0.94
NUP54-204ENST00000506098 CAMKK2Q96RR4 588 aa9.18□□□□□ -0.94
NUP54-204ENST00000506098 API5Q9BZZ5 524 aaKnown RBP9.18□□□□□ -0.94
NUP54-204ENST00000506098 ZBTB1Q9Y2K1 713 aa9.18□□□□□ -0.94
NUP54-204ENST00000506098 ADCY9O60503 1353 aa9.17□□□□□ -0.94
NUP54-204ENST00000506098 IBTKQ9P2D0 1353 aaPredicted RBP9.17□□□□□ -0.94
NUP54-204ENST00000506098 RPS6KA4O75676 772 aa9.17□□□□□ -0.94
NUP54-204ENST00000506098 MYL6BP14649 208 aa9.17□□□□□ -0.94
NUP54-204ENST00000506098 KSR2Q6VAB6 950 aa9.17□□□□□ -0.94
NUP54-204ENST00000506098 FRAT1Q92837 279 aaPredicted RBP9.17□□□□□ -0.94
NUP54-204ENST00000506098 DDX60Q8IY21 1712 aaKnown RBP9.17□□□□□ -0.94
NUP54-204ENST00000506098 ATP10DQ9P241 1426 aa9.16□□□□□ -0.94
NUP54-204ENST00000506098 DDX58O95786 925 aaKnown RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms