RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 STK31Q9BXU1 1019 aa13□□□□□ -0.33
HDAC3-214ENST00000495485 RWDD1Q9H446 243 aaPredicted RBP13□□□□□ -0.33
HDAC3-214ENST00000495485 CICQ96RK0 1608 aaPredicted RBP12.99□□□□□ -0.33
HDAC3-214ENST00000495485 PTPRCP08575 1304 aa12.99□□□□□ -0.33
HDAC3-214ENST00000495485 TRIM27P14373 513 aa12.99□□□□□ -0.33
HDAC3-214ENST00000495485 EN1Q05925 392 aaPredicted RBP12.99□□□□□ -0.33
HDAC3-214ENST00000495485 NBPF14Q5TI25 921 aa12.99□□□□□ -0.33
HDAC3-214ENST00000495485 C8orf58Q8NAV2 365 aa12.99□□□□□ -0.33
HDAC3-214ENST00000495485 NUP188Q5SRE5 1749 aa12.99□□□□□ -0.33
HDAC3-214ENST00000495485 PALLDQ8WX93 1383 aa12.98□□□□□ -0.33
HDAC3-214ENST00000495485 TAF1LQ8IZX4 1826 aa12.98□□□□□ -0.33
HDAC3-214ENST00000495485 ELL2O00472 640 aaPredicted RBP12.98□□□□□ -0.33
HDAC3-214ENST00000495485 TXNRD1Q16881 649 aa12.98□□□□□ -0.33
HDAC3-214ENST00000495485 CCDC30Q5VVM6 783 aa12.98□□□□□ -0.33
HDAC3-214ENST00000495485 ITPRIPQ8IWB1 547 aa12.98□□□□□ -0.33
HDAC3-214ENST00000495485 PAPPAQ13219 1627 aa12.98□□□□□ -0.33
HDAC3-214ENST00000495485 HOXB7P09629 217 aa12.97□□□□□ -0.33
HDAC3-214ENST00000495485 DEFB132Q7Z7B7 95 aa12.97□□□□□ -0.33
HDAC3-214ENST00000495485 VSIG10Q8N0Z9 540 aa12.97□□□□□ -0.33
HDAC3-214ENST00000495485 TSPYL6Q8N831 410 aa12.97□□□□□ -0.33
HDAC3-214ENST00000495485 NFATC2IPQ8NCF5 419 aa12.97□□□□□ -0.33
HDAC3-214ENST00000495485 IL17REQ8NFR9 667 aa12.97□□□□□ -0.33
HDAC3-214ENST00000495485 UBR2Q8IWV8 1755 aa12.97□□□□□ -0.33
HDAC3-214ENST00000495485 QSER1Q2KHR3 1735 aa12.96□□□□□ -0.33
HDAC3-214ENST00000495485 EZH2Q15910 746 aaKnown RBP12.96□□□□□ -0.33
HDAC3-214ENST00000495485 TTC5Q8N0Z6 440 aa12.96□□□□□ -0.33
HDAC3-214ENST00000495485 LGR6Q9HBX8 967 aa12.96□□□□□ -0.33
HDAC3-214ENST00000495485 TEX13AQ9BXU3 409 aaPredicted RBP12.95□□□□□ -0.34
HDAC3-214ENST00000495485 ATG3Q9NT62 314 aa12.95□□□□□ -0.34
HDAC3-214ENST00000495485 CCNL1Q9UK58 526 aaPredicted RBP12.95□□□□□ -0.34
HDAC3-214ENST00000495485 C5P01031 1676 aa12.95□□□□□ -0.34
HDAC3-214ENST00000495485 KDM2BQ8NHM5 1336 aa12.94□□□□□ -0.34
HDAC3-214ENST00000495485 LOC102724428A0A0B4J2F2 783 aa12.94□□□□□ -0.34
HDAC3-214ENST00000495485 BTBD11A6QL63 1104 aa12.94□□□□□ -0.34
HDAC3-214ENST00000495485 RLBP1P12271 317 aa12.94□□□□□ -0.34
HDAC3-214ENST00000495485 SIK1P57059 783 aa12.94□□□□□ -0.34
HDAC3-214ENST00000495485 TSHZ2Q9NRE2 1034 aa12.94□□□□□ -0.34
HDAC3-214ENST00000495485 ZNF790Q6PG37 636 aa12.93□□□□□ -0.34
HDAC3-214ENST00000495485 PTF1AQ7RTS3 328 aa12.93□□□□□ -0.34
HDAC3-214ENST00000495485 TMEM57Q8N5G2 664 aa12.93□□□□□ -0.34
HDAC3-214ENST00000495485 FLAD1Q8NFF5 587 aa12.93□□□□□ -0.34
HDAC3-214ENST00000495485 STK32BQ9NY57 414 aa12.93□□□□□ -0.34
HDAC3-214ENST00000495485 ASAP1Q9ULH1 1129 aa12.93□□□□□ -0.34
HDAC3-214ENST00000495485 SLC4A2P04920 1241 aa12.92□□□□□ -0.34
HDAC3-214ENST00000495485 COL5A3P25940 1745 aaPredicted RBP12.92□□□□□ -0.34
HDAC3-214ENST00000495485 RC3H1Q5TC82 1133 aaKnown RBP12.92□□□□□ -0.34
HDAC3-214ENST00000495485 PROM2Q8N271 834 aa12.92□□□□□ -0.34
HDAC3-214ENST00000495485 FMNL2Q96PY5 1086 aa12.92□□□□□ -0.34
HDAC3-214ENST00000495485 MIS18AQ9NYP9 233 aa12.92□□□□□ -0.34
HDAC3-214ENST00000495485 KDM3BQ7LBC6 1761 aa12.92□□□□□ -0.34
HDAC3-214ENST00000495485 ABCC4O15439 1325 aa12.91□□□□□ -0.34
HDAC3-214ENST00000495485 ATP6V1AP38606 617 aa12.91□□□□□ -0.34
HDAC3-214ENST00000495485 CCT4P50991 539 aaKnown RBP12.9□□□□□ -0.34
HDAC3-214ENST00000495485 HDAC1Q13547 482 aaPredicted RBP12.9□□□□□ -0.34
HDAC3-214ENST00000495485 SLC15A2Q16348 729 aa12.9□□□□□ -0.34
HDAC3-214ENST00000495485 INTS3Q68E01 1043 aaKnown RBP12.9□□□□□ -0.34
HDAC3-214ENST00000495485 ZBTB40Q9NUA8 1239 aa12.9□□□□□ -0.34
HDAC3-214ENST00000495485 C4BP0C0L5 1744 aa12.9□□□□□ -0.34
HDAC3-214ENST00000495485 CNTNAP4Q9C0A0 1308 aa12.89□□□□□ -0.35
HDAC3-214ENST00000495485 KCPQ6ZWJ8 1503 aa12.89□□□□□ -0.35
HDAC3-214ENST00000495485 STARD3NLO95772 234 aa12.89□□□□□ -0.35
HDAC3-214ENST00000495485 ADRA2BP18089 450 aa12.89□□□□□ -0.35
HDAC3-214ENST00000495485 EIF4A1P60842 406 aaKnown RBP12.89□□□□□ -0.35
HDAC3-214ENST00000495485 HDGFL1Q5TGJ6 251 aa12.89□□□□□ -0.35
HDAC3-214ENST00000495485 RBM42Q9BTD8 480 aaKnown RBP12.89□□□□□ -0.35
HDAC3-214ENST00000495485 HEG1Q9ULI3 1381 aa12.89□□□□□ -0.35
HDAC3-214ENST00000495485 UBR3Q6ZT12 1888 aa12.89□□□□□ -0.35
HDAC3-214ENST00000495485 SRCAPQ6ZRS2 3230 aa12.88□□□□□ -0.35
HDAC3-214ENST00000495485 SLC16A10Q8TF71 515 aa12.88□□□□□ -0.35
HDAC3-214ENST00000495485 AKT1S1Q96B36 256 aa12.88□□□□□ -0.35
HDAC3-214ENST00000495485 LRRC4BQ9NT99 713 aa12.88□□□□□ -0.35
HDAC3-214ENST00000495485 TNNQ9UQP3 1299 aa12.88□□□□□ -0.35
HDAC3-214ENST00000495485 MYH14Q7Z406 1995 aaKnown RBP12.88□□□□□ -0.35
HDAC3-214ENST00000495485 ZBTB7BO15156 539 aaPredicted RBP12.87□□□□□ -0.35
HDAC3-214ENST00000495485 SNRPA1P09661 255 aaKnown RBP12.87□□□□□ -0.35
HDAC3-214ENST00000495485 SSFA2P28290 1259 aa12.87□□□□□ -0.35
HDAC3-214ENST00000495485 AK7Q96M32 723 aa12.87□□□□□ -0.35
HDAC3-214ENST00000495485 HDAC5Q9UQL6 1122 aa12.87□□□□□ -0.35
HDAC3-214ENST00000495485 TJP1Q07157 1748 aa12.87□□□□□ -0.35
HDAC3-214ENST00000495485 LAMB4A4D0S4 1761 aa12.86□□□□□ -0.35
HDAC3-214ENST00000495485 PTCD1O75127 700 aaKnown RBP12.86□□□□□ -0.35
HDAC3-214ENST00000495485 IGHDP01880 384 aa12.86□□□□□ -0.35
HDAC3-214ENST00000495485 FKBP5Q13451 457 aaPredicted RBP12.86□□□□□ -0.35
HDAC3-214ENST00000495485 KRT24Q2M2I5 525 aa12.86□□□□□ -0.35
HDAC3-214ENST00000495485 GCC1Q96CN9 775 aa12.86□□□□□ -0.35
HDAC3-214ENST00000495485 TFCP2L1Q9NZI6 479 aa12.86□□□□□ -0.35
HDAC3-214ENST00000495485 DBF4Q9UBU7 674 aaPredicted RBP12.86□□□□□ -0.35
HDAC3-214ENST00000495485 ZBTB47Q9UFB7 747 aaPredicted RBP12.86□□□□□ -0.35
HDAC3-214ENST00000495485 PCDHB15Q9Y5E8 787 aa12.86□□□□□ -0.35
HDAC3-214ENST00000495485 ERBB4Q15303 1308 aa12.86□□□□□ -0.35
HDAC3-214ENST00000495485 GNAI3P08754 354 aa12.85□□□□□ -0.35
HDAC3-214ENST00000495485 FLIIQ13045 1269 aa12.85□□□□□ -0.35
HDAC3-214ENST00000495485 SLC39A6Q13433 755 aa12.85□□□□□ -0.35
HDAC3-214ENST00000495485 RPAP2Q8IXW5 612 aaPredicted RBP12.85□□□□□ -0.35
HDAC3-214ENST00000495485 ZNF496Q96IT1 587 aaPredicted RBP12.85□□□□□ -0.35
HDAC3-214ENST00000495485 RBM19Q9Y4C8 960 aaKnown RBP12.85□□□□□ -0.35
HDAC3-214ENST00000495485 TUBGCP6Q96RT7 1819 aa12.85□□□□□ -0.35
HDAC3-214ENST00000495485 RGL2O15211 777 aa12.84□□□□□ -0.35
HDAC3-214ENST00000495485 DDX58O95786 925 aaKnown RBP12.84□□□□□ -0.35
HDAC3-214ENST00000495485 NPM2Q86SE8 214 aaKnown RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms