RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 FLAD1Q8NFF5 587 aa25.7■■□□□ 1.7
LIME1-205ENST00000480139 MBIPQ9NS73 344 aa25.7■■□□□ 1.7
LIME1-205ENST00000480139 CCDC87Q9NVE4 849 aa25.7■■□□□ 1.7
LIME1-205ENST00000480139 GNPATO15228 680 aa25.69■■□□□ 1.7
LIME1-205ENST00000480139 SSFA2P28290 1259 aa25.69■■□□□ 1.7
LIME1-205ENST00000480139 INTS5Q6P9B9 1019 aaKnown RBP25.68■■□□□ 1.7
LIME1-205ENST00000480139 RPS6KA4O75676 772 aa25.67■■□□□ 1.7
LIME1-205ENST00000480139 ADRA2BP18089 450 aa25.67■■□□□ 1.7
LIME1-205ENST00000480139 RTCBQ9Y3I0 505 aaKnown RBP25.67■■□□□ 1.7
LIME1-205ENST00000480139 PRAMEF22A3QJZ6 481 aa25.66■■□□□ 1.7
LIME1-205ENST00000480139 USP16Q9Y5T5 823 aa25.66■■□□□ 1.7
LIME1-205ENST00000480139 C4AP0C0L4 1744 aa25.66■■□□□ 1.7
LIME1-205ENST00000480139 HOXB7P09629 217 aa25.65■■□□□ 1.7
LIME1-205ENST00000480139 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.64■■□□□ 1.7
LIME1-205ENST00000480139 AMIGO3Q86WK7 504 aa25.64■■□□□ 1.7
LIME1-205ENST00000480139 ZBTB1Q9Y2K1 713 aa25.64■■□□□ 1.7
LIME1-205ENST00000480139 SOS1Q07889 1333 aaPredicted RBP25.63■■□□□ 1.69
LIME1-205ENST00000480139 COL23A1Q86Y22 540 aaPredicted RBP25.63■■□□□ 1.69
LIME1-205ENST00000480139 COL24A1Q17RW2 1714 aa25.63■■□□□ 1.69
LIME1-205ENST00000480139 SLC16A10Q8TF71 515 aa25.62■■□□□ 1.69
LIME1-205ENST00000480139 TRAPPC3LQ5T215 181 aa25.61■■□□□ 1.69
LIME1-205ENST00000480139 PDGFDQ9GZP0 370 aaPredicted RBP25.61■■□□□ 1.69
LIME1-205ENST00000480139 ERBB4Q15303 1308 aa25.61■■□□□ 1.69
LIME1-205ENST00000480139 FANCIQ9NVI1 1328 aa25.61■■□□□ 1.69
LIME1-205ENST00000480139 PHF14O94880 888 aa25.6■■□□□ 1.69
LIME1-205ENST00000480139 IL6STP40189 918 aaPredicted RBP25.6■■□□□ 1.69
LIME1-205ENST00000480139 TSR2Q969E8 191 aaKnown RBP25.6■■□□□ 1.69
LIME1-205ENST00000480139 MYH16Q9H6N6 1097 aa25.6■■□□□ 1.69
LIME1-205ENST00000480139 COL15A1P39059 1388 aa25.59■■□□□ 1.69
LIME1-205ENST00000480139 A1BGP04217 495 aa25.59■■□□□ 1.69
LIME1-205ENST00000480139 EIF5P55010 431 aaKnown RBP25.59■■□□□ 1.69
LIME1-205ENST00000480139 GOLGA2Q08379 1002 aa25.59■■□□□ 1.69
LIME1-205ENST00000480139 KRT24Q2M2I5 525 aa25.59■■□□□ 1.69
LIME1-205ENST00000480139 CANXP27824 592 aaKnown RBP25.58■■□□□ 1.69
LIME1-205ENST00000480139 SPINK5Q9NQ38 1064 aaPredicted RBP25.58■■□□□ 1.69
LIME1-205ENST00000480139 LRP5O75197 1615 aa25.57■■□□□ 1.68
LIME1-205ENST00000480139 DUSP27Q5VZP5 1158 aa25.57■■□□□ 1.68
LIME1-205ENST00000480139 ARHGEF1Q92888 912 aaKnown RBP25.57■■□□□ 1.68
LIME1-205ENST00000480139 MTFR1LQ9H019 292 aa25.57■■□□□ 1.68
LIME1-205ENST00000480139 E9PSI1 815 aa25.56■■□□□ 1.68
LIME1-205ENST00000480139 HNRNPUQ00839 825 aaKnown RBP eCLIP25.56■■□□□ 1.68
LIME1-205ENST00000480139 SMIM5Q71RC9 77 aa25.56■■□□□ 1.68
LIME1-205ENST00000480139 A0A087WZG4 1122 aa25.55■■□□□ 1.68
LIME1-205ENST00000480139 NBPF26B4DH59 902 aa25.55■■□□□ 1.68
LIME1-205ENST00000480139 MSH5O43196 834 aa25.55■■□□□ 1.68
LIME1-205ENST00000480139 RFC4P35249 363 aa25.55■■□□□ 1.68
LIME1-205ENST00000480139 NBPF10Q6P3W6 841 aaKnown RBP25.55■■□□□ 1.68
LIME1-205ENST00000480139 NBPF15Q8N660 670 aa25.55■■□□□ 1.68
LIME1-205ENST00000480139 C8orf58Q8NAV2 365 aa25.55■■□□□ 1.68
LIME1-205ENST00000480139 CHMP4AQ9BY43 222 aa25.55■■□□□ 1.68
LIME1-205ENST00000480139 SCN7AQ01118 1682 aa25.54■■□□□ 1.68
LIME1-205ENST00000480139 EIF2S2P20042 333 aaKnown RBP25.53■■□□□ 1.68
LIME1-205ENST00000480139 SLFN5Q08AF3 891 aa25.53■■□□□ 1.68
LIME1-205ENST00000480139 USP42Q9H9J4 1324 aaKnown RBP25.53■■□□□ 1.68
LIME1-205ENST00000480139 BCORQ6W2J9 1755 aa25.53■■□□□ 1.68
LIME1-205ENST00000480139 ZBTB7AO95365 584 aa25.52■■□□□ 1.68
LIME1-205ENST00000480139 HDGFL1Q5TGJ6 251 aa25.52■■□□□ 1.68
LIME1-205ENST00000480139 NPM2Q86SE8 214 aaKnown RBP25.51■■□□□ 1.67
LIME1-205ENST00000480139 SPON1Q9HCB6 807 aa25.51■■□□□ 1.67
LIME1-205ENST00000480139 NARFQ9UHQ1 456 aa25.51■■□□□ 1.67
LIME1-205ENST00000480139 PIP4K2AP48426 406 aaPredicted RBP25.5■■□□□ 1.67
LIME1-205ENST00000480139 PDIA6Q15084 440 aa25.5■■□□□ 1.67
LIME1-205ENST00000480139 TWISTNBQ3B726 338 aaPredicted RBP25.5■■□□□ 1.67
LIME1-205ENST00000480139 ZBED9Q6R2W3 1325 aa25.5■■□□□ 1.67
LIME1-205ENST00000480139 TRMT2AQ8IZ69 625 aaKnown RBP25.5■■□□□ 1.67
LIME1-205ENST00000480139 TSPYL6Q8N831 410 aa25.5■■□□□ 1.67
LIME1-205ENST00000480139 ELL2O00472 640 aaPredicted RBP25.49■■□□□ 1.67
LIME1-205ENST00000480139 DDX21Q9NR30 783 aaKnown RBP eCLIP25.49■■□□□ 1.67
LIME1-205ENST00000480139 ZPR1O75312 459 aa25.48■■□□□ 1.67
LIME1-205ENST00000480139 GYS1P13807 737 aa25.48■■□□□ 1.67
LIME1-205ENST00000480139 EXOSC9Q06265 439 aaKnown RBP25.48■■□□□ 1.67
LIME1-205ENST00000480139 LRP10Q7Z4F1 713 aa25.48■■□□□ 1.67
LIME1-205ENST00000480139 SGIP1Q9BQI5 828 aa25.48■■□□□ 1.67
LIME1-205ENST00000480139 DBF4Q9UBU7 674 aaPredicted RBP25.48■■□□□ 1.67
LIME1-205ENST00000480139 ZNF330Q9Y3S2 320 aaPredicted RBP25.48■■□□□ 1.67
LIME1-205ENST00000480139 RGL2O15211 777 aa25.47■■□□□ 1.67
LIME1-205ENST00000480139 NLGN1Q8N2Q7 840 aa25.47■■□□□ 1.67
LIME1-205ENST00000480139 CDCA7LQ96GN5 454 aa25.47■■□□□ 1.67
LIME1-205ENST00000480139 PTGER2P43116 358 aa25.46■■□□□ 1.67
LIME1-205ENST00000480139 CCDC30Q5VVM6 783 aa25.46■■□□□ 1.67
LIME1-205ENST00000480139 DZIP3Q86Y13 1208 aaKnown RBP25.46■■□□□ 1.67
LIME1-205ENST00000480139 NECTIN2Q92692 538 aa25.46■■□□□ 1.67
LIME1-205ENST00000480139 CHPF2Q9P2E5 772 aa25.46■■□□□ 1.67
LIME1-205ENST00000480139 SRP68Q9UHB9 627 aaKnown RBP25.46■■□□□ 1.67
LIME1-205ENST00000480139 ATF5Q9Y2D1 282 aaPredicted RBP25.46■■□□□ 1.67
LIME1-205ENST00000480139 CACNA1FO60840 1977 aa25.45■■□□□ 1.67
LIME1-205ENST00000480139 MYL6BP14649 208 aa25.45■■□□□ 1.66
LIME1-205ENST00000480139 USPL1Q5W0Q7 1092 aa25.45■■□□□ 1.66
LIME1-205ENST00000480139 VAMP4O75379 141 aa25.44■■□□□ 1.66
LIME1-205ENST00000480139 PROSER3Q2NL68 480 aa25.44■■□□□ 1.66
LIME1-205ENST00000480139 TBC1D2BQ9UPU7 963 aa25.44■■□□□ 1.66
LIME1-205ENST00000480139 CAMTA2O94983 1202 aa25.43■■□□□ 1.66
LIME1-205ENST00000480139 MSL1Q68DK7 614 aa25.43■■□□□ 1.66
LIME1-205ENST00000480139 BCL2L12Q9HB09 334 aa25.43■■□□□ 1.66
LIME1-205ENST00000480139 HYPKQ9NX55 129 aa25.43■■□□□ 1.66
LIME1-205ENST00000480139 POLD1P28340 1107 aa25.42■■□□□ 1.66
LIME1-205ENST00000480139 FKBP8Q14318 412 aa25.41■■□□□ 1.66
LIME1-205ENST00000480139 CLEC4GQ6UXB4 293 aa25.41■■□□□ 1.66
LIME1-205ENST00000480139 ERVV-1B6SEH8 477 aa25.4■■□□□ 1.66
LIME1-205ENST00000480139 ANXA1P04083 346 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms