RNA–Protein interactions for RNA: ENST00000431390.5

HMGN1-206, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,552 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-206ENST00000431390 FRAT1Q92837 279 aaPredicted RBP23.34■■□□□ 1.33
HMGN1-206ENST00000431390 SLC15A2Q16348 729 aa23.33■■□□□ 1.33
HMGN1-206ENST00000431390 BTAF1O14981 1849 aa23.33■■□□□ 1.33
HMGN1-206ENST00000431390 KAT6BQ8WYB5 2073 aa23.33■■□□□ 1.33
HMGN1-206ENST00000431390 IPO8O15397 1037 aaKnown RBP23.32■■□□□ 1.32
HMGN1-206ENST00000431390 ZKSCAN2Q63HK3 967 aa23.32■■□□□ 1.32
HMGN1-206ENST00000431390 UBR2Q8IWV8 1755 aa23.32■■□□□ 1.32
HMGN1-206ENST00000431390 MS4A1P11836 297 aa23.31■■□□□ 1.32
HMGN1-206ENST00000431390 DOT1LQ8TEK3 1739 aa23.31■■□□□ 1.32
HMGN1-206ENST00000431390 CHD4Q14839 1912 aa23.31■■□□□ 1.32
HMGN1-206ENST00000431390 C20orf194Q5TEA3 1177 aa23.31■■□□□ 1.32
HMGN1-206ENST00000431390 CCDC30Q5VVM6 783 aa23.31■■□□□ 1.32
HMGN1-206ENST00000431390 TTC5Q8N0Z6 440 aa23.31■■□□□ 1.32
HMGN1-206ENST00000431390 SLC39A6Q13433 755 aa23.3■■□□□ 1.32
HMGN1-206ENST00000431390 ARHGAP45Q92619 1136 aa23.3■■□□□ 1.32
HMGN1-206ENST00000431390 ACSBG1Q96GR2 724 aa23.3■■□□□ 1.32
HMGN1-206ENST00000431390 NOB1Q9ULX3 412 aaKnown RBP23.3■■□□□ 1.32
HMGN1-206ENST00000431390 ATF7IPQ6VMQ6 1270 aa23.29■■□□□ 1.32
HMGN1-206ENST00000431390 FHDC1Q9C0D6 1143 aaPredicted RBP23.29■■□□□ 1.32
HMGN1-206ENST00000431390 TMOD3Q9NYL9 352 aa23.29■■□□□ 1.32
HMGN1-206ENST00000431390 GIGYF1O75420 1035 aaPredicted RBP23.28■■□□□ 1.32
HMGN1-206ENST00000431390 STK31Q9BXU1 1019 aa23.27■■□□□ 1.32
HMGN1-206ENST00000431390 C5P01031 1676 aa23.27■■□□□ 1.32
HMGN1-206ENST00000431390 TCERG1O14776 1098 aaKnown RBP23.27■■□□□ 1.32
HMGN1-206ENST00000431390 HDGFL1Q5TGJ6 251 aa23.27■■□□□ 1.32
HMGN1-206ENST00000431390 FMNL2Q96PY5 1086 aa23.27■■□□□ 1.32
HMGN1-206ENST00000431390 CRBNQ96SW2 442 aa23.27■■□□□ 1.32
HMGN1-206ENST00000431390 SYT17Q9BSW7 474 aa23.27■■□□□ 1.32
HMGN1-206ENST00000431390 MTFR1LQ9H019 292 aa23.27■■□□□ 1.32
HMGN1-206ENST00000431390 TRIM27P14373 513 aa23.26■■□□□ 1.31
HMGN1-206ENST00000431390 EXOC6Q8TAG9 804 aa23.26■■□□□ 1.31
HMGN1-206ENST00000431390 DZIP1LQ8IYY4 767 aaKnown RBP23.25■■□□□ 1.31
HMGN1-206ENST00000431390 ZNF496Q96IT1 587 aaPredicted RBP23.25■■□□□ 1.31
HMGN1-206ENST00000431390 SGIP1Q9BQI5 828 aa23.25■■□□□ 1.31
HMGN1-206ENST00000431390 PPP4R2Q9NY27 417 aa23.25■■□□□ 1.31
HMGN1-206ENST00000431390 KCPQ6ZWJ8 1503 aa23.25■■□□□ 1.31
HMGN1-206ENST00000431390 LAMB4A4D0S4 1761 aa23.25■■□□□ 1.31
HMGN1-206ENST00000431390 SLC4A2P04920 1241 aa23.24■■□□□ 1.31
HMGN1-206ENST00000431390 PTPRCP08575 1304 aa23.24■■□□□ 1.31
HMGN1-206ENST00000431390 FTSJ3Q8IY81 847 aaKnown RBP23.23■■□□□ 1.31
HMGN1-206ENST00000431390 PIGBQ92521 554 aa23.23■■□□□ 1.31
HMGN1-206ENST00000431390 SNRPA1P09661 255 aaKnown RBP23.23■■□□□ 1.31
HMGN1-206ENST00000431390 ZNF784Q8NCA9 323 aaPredicted RBP23.23■■□□□ 1.31
HMGN1-206ENST00000431390 PANK1Q8TE04 598 aa23.23■■□□□ 1.31
HMGN1-206ENST00000431390 API5Q9BZZ5 524 aaKnown RBP23.23■■□□□ 1.31
HMGN1-206ENST00000431390 TNNQ9UQP3 1299 aa23.22■■□□□ 1.31
HMGN1-206ENST00000431390 RLBP1P12271 317 aa23.21■■□□□ 1.31
HMGN1-206ENST00000431390 EIF2S2P20042 333 aaKnown RBP23.21■■□□□ 1.31
HMGN1-206ENST00000431390 CLUAP1Q96AJ1 413 aa23.21■■□□□ 1.31
HMGN1-206ENST00000431390 UTRNP46939 3433 aa23.2■■□□□ 1.3
HMGN1-206ENST00000431390 QSER1Q2KHR3 1735 aa23.2■■□□□ 1.3
HMGN1-206ENST00000431390 TUBGCP6Q96RT7 1819 aa23.19■■□□□ 1.3
HMGN1-206ENST00000431390 PRIM1P49642 420 aaKnown RBP23.19■■□□□ 1.3
HMGN1-206ENST00000431390 ZNF827Q17R98 1081 aa23.19■■□□□ 1.3
HMGN1-206ENST00000431390 NECTIN2Q92692 538 aa23.19■■□□□ 1.3
HMGN1-206ENST00000431390 PRAMEF22A3QJZ6 481 aa23.18■■□□□ 1.3
HMGN1-206ENST00000431390 ARXQ96QS3 562 aa23.18■■□□□ 1.3
HMGN1-206ENST00000431390 DBF4Q9UBU7 674 aaPredicted RBP23.18■■□□□ 1.3
HMGN1-206ENST00000431390 COG6Q9Y2V7 657 aa23.18■■□□□ 1.3
HMGN1-206ENST00000431390 ABCC4O15439 1325 aa23.18■■□□□ 1.3
HMGN1-206ENST00000431390 MVPQ14764 893 aaKnown RBP23.18■■□□□ 1.3
HMGN1-206ENST00000431390 ATG3Q9NT62 314 aa23.18■■□□□ 1.3
HMGN1-206ENST00000431390 AAMPQ13685 434 aa23.17■■□□□ 1.3
HMGN1-206ENST00000431390 SYTL4Q96C24 671 aaPredicted RBP23.17■■□□□ 1.3
HMGN1-206ENST00000431390 LRRC4BQ9NT99 713 aa23.17■■□□□ 1.3
HMGN1-206ENST00000431390 CHPF2Q9P2E5 772 aa23.17■■□□□ 1.3
HMGN1-206ENST00000431390 ASAP1Q9ULH1 1129 aa23.17■■□□□ 1.3
HMGN1-206ENST00000431390 FLIIQ13045 1269 aa23.16■■□□□ 1.3
HMGN1-206ENST00000431390 G2E3Q7L622 706 aa23.16■■□□□ 1.3
HMGN1-206ENST00000431390 VSIG10Q8N0Z9 540 aa23.16■■□□□ 1.3
HMGN1-206ENST00000431390 COL24A1Q17RW2 1714 aa23.15■■□□□ 1.3
HMGN1-206ENST00000431390 TMEM57Q8N5G2 664 aa23.14■■□□□ 1.3
HMGN1-206ENST00000431390 DDX21Q9NR30 783 aaKnown RBP eCLIP23.14■■□□□ 1.3
HMGN1-206ENST00000431390 DDX19BQ9UMR2 479 aa23.14■■□□□ 1.3
HMGN1-206ENST00000431390 PTCD1O75127 700 aaKnown RBP23.14■■□□□ 1.29
HMGN1-206ENST00000431390 ERBB4Q15303 1308 aa23.14■■□□□ 1.29
HMGN1-206ENST00000431390 TEX13AQ9BXU3 409 aaPredicted RBP23.13■■□□□ 1.29
HMGN1-206ENST00000431390 HYPKQ9NX55 129 aa23.13■■□□□ 1.29
HMGN1-206ENST00000431390 USP16Q9Y5T5 823 aa23.13■■□□□ 1.29
HMGN1-206ENST00000431390 N4BP2Q86UW6 1770 aaPredicted RBP23.13■■□□□ 1.29
HMGN1-206ENST00000431390 ITPRIPQ8IWB1 547 aa23.12■■□□□ 1.29
HMGN1-206ENST00000431390 LY75O60449 1722 aa23.11■■□□□ 1.29
HMGN1-206ENST00000431390 FKBP5Q13451 457 aaPredicted RBP23.11■■□□□ 1.29
HMGN1-206ENST00000431390 CICQ96RK0 1608 aaPredicted RBP23.11■■□□□ 1.29
HMGN1-206ENST00000431390 PXDNLA1KZ92 1463 aa23.11■■□□□ 1.29
HMGN1-206ENST00000431390 PDIA6Q15084 440 aa23.1■■□□□ 1.29
HMGN1-206ENST00000431390 INTS3Q68E01 1043 aaKnown RBP23.1■■□□□ 1.29
HMGN1-206ENST00000431390 AKT1S1Q96B36 256 aa23.1■■□□□ 1.29
HMGN1-206ENST00000431390 PHAXQ9H814 394 aaKnown RBP23.1■■□□□ 1.29
HMGN1-206ENST00000431390 CCDC136Q96JN2 1154 aa23.1■■□□□ 1.29
HMGN1-206ENST00000431390 CHMP4BQ9H444 224 aaKnown RBP23.1■■□□□ 1.29
HMGN1-206ENST00000431390 KLHL34Q8N239 644 aa23.09■■□□□ 1.29
HMGN1-206ENST00000431390 SMARCC1Q92922 1105 aaPredicted RBP23.09■■□□□ 1.29
HMGN1-206ENST00000431390 TJP1Q07157 1748 aa23.08■■□□□ 1.29
HMGN1-206ENST00000431390 ZNF831Q5JPB2 1677 aa23.08■■□□□ 1.29
HMGN1-206ENST00000431390 PROSER3Q2NL68 480 aa23.08■■□□□ 1.29
HMGN1-206ENST00000431390 RBM42Q9BTD8 480 aaKnown RBP23.08■■□□□ 1.29
HMGN1-206ENST00000431390 PNPLA7Q6ZV29 1317 aa23.07■■□□□ 1.28
HMGN1-206ENST00000431390 ANXA1P04083 346 aa23.07■■□□□ 1.28
HMGN1-206ENST00000431390 KCNQ4P56696 695 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 186.6 ms