RNA–Protein interactions for RNA: ENST00000431390.5

HMGN1-206, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,552 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-206ENST00000431390 NISCHQ9Y2I1 1504 aa42.15■■■■■ 4.34
HMGN1-206ENST00000431390 ABCC9O60706 1549 aa37.59■■■■□ 3.61
HMGN1-206ENST00000431390 CCDC180Q9P1Z9 1646 aa37.31■■■■□ 3.56
HMGN1-206ENST00000431390 RB1CC1Q8TDY2 1594 aa35.63■■■■□ 3.29
HMGN1-206ENST00000431390 DNAJC5BQ9UF47 199 aa35.5■■■■□ 3.27
HMGN1-206ENST00000431390 ZCCHC6Q5VYS8 1495 aaKnown RBP35.35■■■■□ 3.25
HMGN1-206ENST00000431390 NACADO15069 1562 aa35.28■■■■□ 3.24
HMGN1-206ENST00000431390 DCAF8L2P0C7V8 631 aa35.01■■■■□ 3.2
HMGN1-206ENST00000431390 UNC13AQ9UPW8 1703 aa34.97■■■■□ 3.19
HMGN1-206ENST00000431390 DCAF1Q9Y4B6 1507 aa34.94■■■■□ 3.18
HMGN1-206ENST00000431390 PABPN1Q86U42 306 aaKnown RBP eCLIP34.91■■■■□ 3.18
HMGN1-206ENST00000431390 MYO15BQ96JP2 1530 aa34.69■■■■□ 3.14
HMGN1-206ENST00000431390 BICRAQ9NZM4 1560 aa34.63■■■■□ 3.13
HMGN1-206ENST00000431390 SHROOM4Q9ULL8 1493 aa34.05■■■■□ 3.04
HMGN1-206ENST00000431390 SCRIBQ14160 1630 aa34■■■■□ 3.03
HMGN1-206ENST00000431390 CC2D2AQ9P2K1 1620 aa33.96■■■■□ 3.03
HMGN1-206ENST00000431390 CECR2Q9BXF3 1484 aa33.86■■■■□ 3.01
HMGN1-206ENST00000431390 EIF4G1Q04637 1599 aaKnown RBP33.8■■■■□ 3
HMGN1-206ENST00000431390 DNAJC5Q9H3Z4 198 aa32.78■■■□□ 2.84
HMGN1-206ENST00000431390 BAZ1AQ9NRL2 1556 aaPredicted RBP32.61■■■□□ 2.81
HMGN1-206ENST00000431390 NCAPD3P42695 1498 aa32.55■■■□□ 2.8
HMGN1-206ENST00000431390 RSF1Q96T23 1441 aaPredicted RBP32.51■■■□□ 2.8
HMGN1-206ENST00000431390 MROH2BQ7Z745 1585 aa32.5■■■□□ 2.79
HMGN1-206ENST00000431390 SMARCA4P51532 1647 aa32.49■■■□□ 2.79
HMGN1-206ENST00000431390 SUPT5HO00267 1087 aaKnown RBP32.49■■■□□ 2.79
HMGN1-206ENST00000431390 CUX2O14529 1486 aa32.48■■■□□ 2.79
HMGN1-206ENST00000431390 ERCC6Q03468 1493 aa32.45■■■□□ 2.79
HMGN1-206ENST00000431390 ATAD2BQ9ULI0 1458 aa32.43■■■□□ 2.78
HMGN1-206ENST00000431390 SMARCA2P51531 1590 aa32.33■■■□□ 2.77
HMGN1-206ENST00000431390 HMGXB3Q12766 1538 aa32.32■■■□□ 2.76
HMGN1-206ENST00000431390 WIZO95785 1651 aa32.23■■■□□ 2.75
HMGN1-206ENST00000431390 NESP48681 1621 aa32.22■■■□□ 2.75
HMGN1-206ENST00000431390 PEG3Q9GZU2 1588 aa32.16■■■□□ 2.74
HMGN1-206ENST00000431390 BAZ1BQ9UIG0 1483 aaKnown RBP32.11■■■□□ 2.73
HMGN1-206ENST00000431390 THOC2Q8NI27 1593 aaKnown RBP31.98■■■□□ 2.71
HMGN1-206ENST00000431390 TOP2AP11388 1531 aaKnown RBP31.95■■■□□ 2.7
HMGN1-206ENST00000431390 LAMC3Q9Y6N6 1575 aa31.92■■■□□ 2.7
HMGN1-206ENST00000431390 KIF21AQ7Z4S6 1674 aa31.86■■■□□ 2.69
HMGN1-206ENST00000431390 PDS5BQ9NTI5 1447 aa31.69■■■□□ 2.66
HMGN1-206ENST00000431390 CCDC88BA6NC98 1476 aa31.55■■■□□ 2.64
HMGN1-206ENST00000431390 CADPSQ9ULU8 1353 aa31.53■■■□□ 2.64
HMGN1-206ENST00000431390 MRC2Q9UBG0 1479 aa31.48■■■□□ 2.63
HMGN1-206ENST00000431390 WDR62O43379 1518 aa31.42■■■□□ 2.62
HMGN1-206ENST00000431390 CEP164Q9UPV0 1460 aa31.29■■■□□ 2.6
HMGN1-206ENST00000431390 TRIM41Q8WV44 630 aa31.26■■■□□ 2.6
HMGN1-206ENST00000431390 FANCD2Q9BXW9 1451 aa31.22■■■□□ 2.59
HMGN1-206ENST00000431390 CFTRP13569 1480 aa31.13■■■□□ 2.57
HMGN1-206ENST00000431390 URB2Q14146 1524 aaKnown RBP31■■■□□ 2.55
HMGN1-206ENST00000431390 CHIC1Q5VXU3 224 aa30.98■■■□□ 2.55
HMGN1-206ENST00000431390 PRDM2Q13029 1718 aa30.95■■■□□ 2.55
HMGN1-206ENST00000431390 OSCARQ8IYS5 282 aa30.9■■■□□ 2.54
HMGN1-206ENST00000431390 ABCC8Q09428 1581 aa30.73■■■□□ 2.51
HMGN1-206ENST00000431390 ZNF608Q9ULD9 1512 aaPredicted RBP30.68■■■□□ 2.5
HMGN1-206ENST00000431390 RIMBP3CA6NJZ7 1639 aa30.67■■■□□ 2.5
HMGN1-206ENST00000431390 RIMBP3BA6NNM3 1639 aa30.67■■■□□ 2.5
HMGN1-206ENST00000431390 RIMBP3Q9UFD9 1639 aa30.67■■■□□ 2.5
HMGN1-206ENST00000431390 IFT140Q96RY7 1462 aa30.66■■■□□ 2.5
HMGN1-206ENST00000431390 WRNQ14191 1432 aaPredicted RBP eCLIP30.63■■■□□ 2.49
HMGN1-206ENST00000431390 TOPBP1Q92547 1522 aa30.61■■■□□ 2.49
HMGN1-206ENST00000431390 EIF4G3O43432 1585 aaKnown RBP30.54■■■□□ 2.48
HMGN1-206ENST00000431390 SYNJ1O43426 1573 aa30.51■■■□□ 2.48
HMGN1-206ENST00000431390 ARHGEF11O15085 1522 aa30.49■■■□□ 2.47
HMGN1-206ENST00000431390 DNMBPQ6XZF7 1577 aa30.48■■■□□ 2.47
HMGN1-206ENST00000431390 TOP2BQ02880 1626 aa30.48■■■□□ 2.47
HMGN1-206ENST00000431390 BIVM-ERCC5R4GMW8 1640 aa30.48■■■□□ 2.47
HMGN1-206ENST00000431390 CUX1P39880 1505 aa30.43■■■□□ 2.46
HMGN1-206ENST00000431390 CHD1O14646 1710 aa30.42■■■□□ 2.46
HMGN1-206ENST00000431390 TARBP1Q13395 1621 aaKnown RBP30.39■■■□□ 2.46
HMGN1-206ENST00000431390 AQRO60306 1485 aaKnown RBP eCLIP30.33■■■□□ 2.452e-11■■■■■ 27.4
HMGN1-206ENST00000431390 POLA1P09884 1462 aaPredicted RBP30.27■■■□□ 2.44
HMGN1-206ENST00000431390 CYB5RLQ6IPT4 315 aa30.23■■■□□ 2.43
HMGN1-206ENST00000431390 FBLN2P98095 1184 aa30.18■■■□□ 2.42
HMGN1-206ENST00000431390 ARAP1Q96P48 1450 aa30.17■■■□□ 2.42
HMGN1-206ENST00000431390 RAD54L2Q9Y4B4 1467 aa30.17■■■□□ 2.42
HMGN1-206ENST00000431390 FGD5Q6ZNL6 1462 aa30.15■■■□□ 2.42
HMGN1-206ENST00000431390 SOGA1O94964 1423 aa30.1■■■□□ 2.41
HMGN1-206ENST00000431390 TDRD9Q8NDG6 1382 aaKnown RBP30.09■■■□□ 2.41
HMGN1-206ENST00000431390 EEA1Q15075 1411 aa30.08■■■□□ 2.41
HMGN1-206ENST00000431390 SNAPC4Q5SXM2 1469 aa30.04■■■□□ 2.4
HMGN1-206ENST00000431390 WDR97A6NE52 1622 aa30.02■■■□□ 2.4
HMGN1-206ENST00000431390 TRHP20396 242 aaPredicted RBP30.01■■■□□ 2.39
HMGN1-206ENST00000431390 CLASP1Q7Z460 1538 aa29.98■■■□□ 2.39
HMGN1-206ENST00000431390 RUSC2Q8N2Y8 1516 aa29.97■■■□□ 2.39
HMGN1-206ENST00000431390 FAM9AQ8IZU1 332 aaPredicted RBP29.97■■■□□ 2.39
HMGN1-206ENST00000431390 ABCA10Q8WWZ4 1543 aa29.92■■■□□ 2.38
HMGN1-206ENST00000431390 MAGI1Q96QZ7 1491 aaPredicted RBP29.92■■■□□ 2.38
HMGN1-206ENST00000431390 KIF27Q86VH2 1401 aa29.91■■■□□ 2.38
HMGN1-206ENST00000431390 GRIN2BQ13224 1484 aa29.88■■■□□ 2.37
HMGN1-206ENST00000431390 CHMP7Q8WUX9 453 aaPredicted RBP29.88■■■□□ 2.37
HMGN1-206ENST00000431390 PBRM1Q86U86 1689 aa29.87■■■□□ 2.37
HMGN1-206ENST00000431390 CSRNP3Q8WYN3 585 aa29.84■■■□□ 2.37
HMGN1-206ENST00000431390 SYNJ2O15056 1496 aa29.82■■■□□ 2.36
HMGN1-206ENST00000431390 GAPVD1Q14C86 1478 aa29.74■■■□□ 2.35
HMGN1-206ENST00000431390 ABCA5Q8WWZ7 1642 aa29.73■■■□□ 2.35
HMGN1-206ENST00000431390 KIF21BO75037 1637 aa29.7■■■□□ 2.35
HMGN1-206ENST00000431390 LOC105371045A0A1W2PR82 267 aa29.69■■■□□ 2.34
HMGN1-206ENST00000431390 IGF1RP08069 1367 aa29.64■■■□□ 2.33
HMGN1-206ENST00000431390 PRXQ9BXM0 1461 aa29.62■■■□□ 2.33
HMGN1-206ENST00000431390 GOLGA3Q08378 1498 aa29.6■■■□□ 2.33
HMGN1-206ENST00000431390 ERICH3Q5RHP9 1530 aa29.59■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms