RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 MRGPRX2Q96LB1 330 aa7.88□□□□□ -1.15
CLK1-202ENST00000409403 ESF1Q9H501 851 aaKnown RBP7.88□□□□□ -1.15
CLK1-202ENST00000409403 CCDC9Q9Y3X0 531 aaKnown RBP7.88□□□□□ -1.15
CLK1-202ENST00000409403 ERVK-9P63128 1117 aa7.87□□□□□ -1.15
CLK1-202ENST00000409403 SPRYD7Q5W111 196 aa7.87□□□□□ -1.15
CLK1-202ENST00000409403 GZF1Q9H116 711 aaPredicted RBP7.87□□□□□ -1.15
CLK1-202ENST00000409403 SUPT6HQ7KZ85 1726 aaKnown RBP7.87□□□□□ -1.15
CLK1-202ENST00000409403 NR5A1Q13285 461 aa7.86□□□□□ -1.15
CLK1-202ENST00000409403 CC2D2BQ6DHV5 1058 aa7.86□□□□□ -1.15
CLK1-202ENST00000409403 CCDC116Q8IYX3 515 aa7.86□□□□□ -1.15
CLK1-202ENST00000409403 SSFA2P28290 1259 aa7.86□□□□□ -1.15
CLK1-202ENST00000409403 TMPRSS4Q9NRS4 437 aa7.86□□□□□ -1.15
CLK1-202ENST00000409403 SFI1A8K8P3 1242 aa7.85□□□□□ -1.15
CLK1-202ENST00000409403 CYLDQ9NQC7 956 aa7.85□□□□□ -1.15
CLK1-202ENST00000409403 SLAIN2Q9P270 581 aa7.85□□□□□ -1.15
CLK1-202ENST00000409403 IVNS1ABPQ9Y6Y0 642 aa7.85□□□□□ -1.15
CLK1-202ENST00000409403 LOC105371045A0A1W2PR82 267 aa7.84□□□□□ -1.15
CLK1-202ENST00000409403 ATP2B4P23634 1241 aa7.84□□□□□ -1.15
CLK1-202ENST00000409403 PPP1R26Q5T8A7 1209 aaPredicted RBP7.84□□□□□ -1.15
CLK1-202ENST00000409403 ZNF697Q5TEC3 545 aa7.84□□□□□ -1.15
CLK1-202ENST00000409403 PHLDB3Q6NSJ2 640 aa7.84□□□□□ -1.15
CLK1-202ENST00000409403 ZNF598Q86UK7 904 aaKnown RBP7.84□□□□□ -1.15
CLK1-202ENST00000409403 ZNF784Q8NCA9 323 aaPredicted RBP7.84□□□□□ -1.15
CLK1-202ENST00000409403 OSBPL3Q9H4L5 887 aa7.84□□□□□ -1.15
CLK1-202ENST00000409403 GNEQ9Y223 722 aaKnown RBP7.84□□□□□ -1.15
CLK1-202ENST00000409403 ZFYVE16Q7Z3T8 1539 aa7.83□□□□□ -1.16
CLK1-202ENST00000409403 TOM1O60784 492 aa7.83□□□□□ -1.16
CLK1-202ENST00000409403 TMCO4Q5TGY1 634 aa7.83□□□□□ -1.16
CLK1-202ENST00000409403 CARMIL2Q6F5E8 1435 aa7.83□□□□□ -1.16
CLK1-202ENST00000409403 M0R2N6 131 aa7.83□□□□□ -1.16
CLK1-202ENST00000409403 NR3C2P08235 984 aa7.83□□□□□ -1.16
CLK1-202ENST00000409403 CCER1Q8TC90 406 aaPredicted RBP7.83□□□□□ -1.16
CLK1-202ENST00000409403 ABCA9Q8IUA7 1624 aa7.82□□□□□ -1.16
CLK1-202ENST00000409403 AKNAQ7Z591 1439 aa7.82□□□□□ -1.16
CLK1-202ENST00000409403 HINFPQ9BQA5 517 aa7.82□□□□□ -1.16
CLK1-202ENST00000409403 PGPEP1Q9NXJ5 209 aa7.82□□□□□ -1.16
CLK1-202ENST00000409403 EMILIN1Q9Y6C2 1016 aa7.82□□□□□ -1.16
CLK1-202ENST00000409403 WRNQ14191 1432 aaPredicted RBP eCLIP7.81□□□□□ -1.16
CLK1-202ENST00000409403 PRMT3O60678 531 aa7.81□□□□□ -1.16
CLK1-202ENST00000409403 LILRA1O75019 489 aa7.81□□□□□ -1.16
CLK1-202ENST00000409403 ALDH1A1P00352 501 aa7.81□□□□□ -1.16
CLK1-202ENST00000409403 ARID4AP29374 1257 aaPredicted RBP7.81□□□□□ -1.16
CLK1-202ENST00000409403 FOXC1Q12948 553 aa7.81□□□□□ -1.16
CLK1-202ENST00000409403 CYP2U1Q7Z449 544 aa7.81□□□□□ -1.16
CLK1-202ENST00000409403 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.81□□□□□ -1.16
CLK1-202ENST00000409403 V9GY48 417 aaPredicted RBP7.81□□□□□ -1.16
CLK1-202ENST00000409403 EFCAB5A4FU69 1503 aa7.8□□□□□ -1.16
CLK1-202ENST00000409403 ZMYM4Q5VZL5 1548 aa7.8□□□□□ -1.16
CLK1-202ENST00000409403 DISP1Q96F81 1524 aa7.8□□□□□ -1.16
CLK1-202ENST00000409403 TMEM229AB2RXF0 380 aa7.8□□□□□ -1.16
CLK1-202ENST00000409403 WASLO00401 505 aaPredicted RBP7.8□□□□□ -1.16
CLK1-202ENST00000409403 TXNDC2Q86VQ3 553 aa7.8□□□□□ -1.16
CLK1-202ENST00000409403 TSEN2Q8NCE0 465 aaKnown RBP7.8□□□□□ -1.16
CLK1-202ENST00000409403 C1orf216Q8TAB5 229 aa7.8□□□□□ -1.16
CLK1-202ENST00000409403 PRKD2Q9BZL6 878 aa7.8□□□□□ -1.16
CLK1-202ENST00000409403 ZNF358Q9NW07 568 aa7.8□□□□□ -1.16
CLK1-202ENST00000409403 PKD2L1Q9P0L9 805 aa7.8□□□□□ -1.16
CLK1-202ENST00000409403 WASF2Q9Y6W5 498 aa7.8□□□□□ -1.16
CLK1-202ENST00000409403 NEO1Q92859 1461 aa7.8□□□□□ -1.16
CLK1-202ENST00000409403 SCNN1DP51172 638 aa7.79□□□□□ -1.16
CLK1-202ENST00000409403 GDF10P55107 478 aa7.79□□□□□ -1.16
CLK1-202ENST00000409403 OCLNQ16625 522 aa7.79□□□□□ -1.16
CLK1-202ENST00000409403 PRIMPOLQ96LW4 560 aa7.79□□□□□ -1.16
CLK1-202ENST00000409403 CXXC1Q9P0U4 656 aaPredicted RBP7.79□□□□□ -1.16
CLK1-202ENST00000409403 BIVM-ERCC5R4GMW8 1640 aa7.79□□□□□ -1.16
CLK1-202ENST00000409403 CPS1P31327 1500 aa7.79□□□□□ -1.16
CLK1-202ENST00000409403 BACH1O14867 736 aa7.79□□□□□ -1.16
CLK1-202ENST00000409403 NNTQ13423 1086 aa7.79□□□□□ -1.16
CLK1-202ENST00000409403 SNIP1Q8TAD8 396 aaKnown RBP7.79□□□□□ -1.16
CLK1-202ENST00000409403 LRRC7Q96NW7 1537 aa7.78□□□□□ -1.16
CLK1-202ENST00000409403 IQGAP2Q13576 1575 aa7.78□□□□□ -1.16
CLK1-202ENST00000409403 RAPGEF6Q8TEU7 1601 aa7.78□□□□□ -1.16
CLK1-202ENST00000409403 ZNF142P52746 1687 aaPredicted RBP7.78□□□□□ -1.16
CLK1-202ENST00000409403 GNRH1P01148 92 aa7.78□□□□□ -1.16
CLK1-202ENST00000409403 ADD1P35611 737 aaKnown RBP7.78□□□□□ -1.16
CLK1-202ENST00000409403 SND1Q7KZF4 910 aaKnown RBP eCLIP7.78□□□□□ -1.16
CLK1-202ENST00000409403 LGR5O75473 907 aa7.77□□□□□ -1.17
CLK1-202ENST00000409403 INHAP05111 366 aa7.77□□□□□ -1.17
CLK1-202ENST00000409403 ETNK1Q9HBU6 452 aa7.77□□□□□ -1.17
CLK1-202ENST00000409403 MTMR7Q9Y216 660 aa7.77□□□□□ -1.17
CLK1-202ENST00000409403 PHLDB1Q86UU1 1377 aa7.77□□□□□ -1.17
CLK1-202ENST00000409403 LRP5O75197 1615 aa7.77□□□□□ -1.17
CLK1-202ENST00000409403 RNF17Q9BXT8 1623 aaKnown RBP7.77□□□□□ -1.17
CLK1-202ENST00000409403 STAU1O95793 577 aaKnown RBP7.76□□□□□ -1.17
CLK1-202ENST00000409403 WEE1P30291 646 aa7.76□□□□□ -1.17
CLK1-202ENST00000409403 MFAP1P55081 439 aaKnown RBP7.76□□□□□ -1.17
CLK1-202ENST00000409403 PTPRKQ15262 1439 aa7.76□□□□□ -1.17
CLK1-202ENST00000409403 ESCO1Q5FWF5 840 aa7.76□□□□□ -1.17
CLK1-202ENST00000409403 TTC24A2A3L6 582 aaPredicted RBP7.76□□□□□ -1.17
CLK1-202ENST00000409403 TAS1R3Q7RTX0 852 aa7.76□□□□□ -1.17
CLK1-202ENST00000409403 POLR1AO95602 1720 aaPredicted RBP7.75□□□□□ -1.17
CLK1-202ENST00000409403 HECW1Q76N89 1606 aa7.75□□□□□ -1.17
CLK1-202ENST00000409403 GDF9O60383 454 aa7.75□□□□□ -1.17
CLK1-202ENST00000409403 ADH1AP07327 375 aa7.75□□□□□ -1.17
CLK1-202ENST00000409403 SCNN1AP37088 669 aa7.75□□□□□ -1.17
CLK1-202ENST00000409403 CYP4X1Q8N118 509 aa7.75□□□□□ -1.17
CLK1-202ENST00000409403 SLC4A9Q96Q91 983 aa7.75□□□□□ -1.17
CLK1-202ENST00000409403 ARHGEF10LQ9HCE6 1279 aa7.75□□□□□ -1.17
CLK1-202ENST00000409403 SERTAD1Q9UHV2 236 aa7.75□□□□□ -1.17
CLK1-202ENST00000409403 DENND4BO75064 1496 aaPredicted RBP7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms