RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 GOLGA2Q08379 1002 aa9.17□□□□□ -0.94
LIMA1-202ENST00000394943 TEFQ10587 303 aa9.17□□□□□ -0.94
LIMA1-202ENST00000394943 DCTN1Q14203 1278 aa9.17□□□□□ -0.94
LIMA1-202ENST00000394943 ZNF496Q96IT1 587 aaPredicted RBP9.17□□□□□ -0.94
LIMA1-202ENST00000394943 MYH16Q9H6N6 1097 aa9.17□□□□□ -0.94
LIMA1-202ENST00000394943 ANKRD31Q8N7Z5 1873 aa9.17□□□□□ -0.94
LIMA1-202ENST00000394943 ALDH1L2Q3SY69 923 aa9.16□□□□□ -0.94
LIMA1-202ENST00000394943 RNF123Q5XPI4 1314 aa9.16□□□□□ -0.94
LIMA1-202ENST00000394943 EIF5P55010 431 aaKnown RBP9.16□□□□□ -0.94
LIMA1-202ENST00000394943 KCNQ3O43525 872 aa9.16□□□□□ -0.94
LIMA1-202ENST00000394943 VAMP4O75379 141 aa9.16□□□□□ -0.94
LIMA1-202ENST00000394943 IL6STP40189 918 aaPredicted RBP9.16□□□□□ -0.94
LIMA1-202ENST00000394943 A0A1B0GUL6 1792 aa9.15□□□□□ -0.94
LIMA1-202ENST00000394943 RPS6KA4O75676 772 aa9.15□□□□□ -0.94
LIMA1-202ENST00000394943 FAM9BQ8IZU0 186 aa9.15□□□□□ -0.94
LIMA1-202ENST00000394943 FLAD1Q8NFF5 587 aa9.15□□□□□ -0.94
LIMA1-202ENST00000394943 ACSBG1Q96GR2 724 aa9.15□□□□□ -0.95
LIMA1-202ENST00000394943 APBA3O96018 575 aa9.14□□□□□ -0.95
LIMA1-202ENST00000394943 EZH2Q15910 746 aaKnown RBP9.14□□□□□ -0.95
LIMA1-202ENST00000394943 SGIP1Q9BQI5 828 aa9.14□□□□□ -0.95
LIMA1-202ENST00000394943 THUMPD2Q9BTF0 503 aaKnown RBP9.14□□□□□ -0.95
LIMA1-202ENST00000394943 PNPLA7Q6ZV29 1317 aa9.14□□□□□ -0.95
LIMA1-202ENST00000394943 ERVV-1B6SEH8 477 aa9.13□□□□□ -0.95
LIMA1-202ENST00000394943 FAM182BQ5T319 152 aa9.13□□□□□ -0.95
LIMA1-202ENST00000394943 TSPYL4Q9UJ04 414 aa9.13□□□□□ -0.95
LIMA1-202ENST00000394943 RRP7AQ9Y3A4 280 aaKnown RBP9.13□□□□□ -0.95
LIMA1-202ENST00000394943 ZNF827Q17R98 1081 aa9.13□□□□□ -0.95
LIMA1-202ENST00000394943 SLC16A10Q8TF71 515 aa9.13□□□□□ -0.95
LIMA1-202ENST00000394943 LTBP1Q14766 1721 aa9.13□□□□□ -0.95
LIMA1-202ENST00000394943 NBPF26B4DH59 902 aa9.13□□□□□ -0.95
LIMA1-202ENST00000394943 NBPF14Q5TI25 921 aa9.13□□□□□ -0.95
LIMA1-202ENST00000394943 NBPF10Q6P3W6 841 aaKnown RBP9.13□□□□□ -0.95
LIMA1-202ENST00000394943 NBPF15Q8N660 670 aa9.13□□□□□ -0.95
LIMA1-202ENST00000394943 MYH3P11055 1940 aa9.12□□□□□ -0.95
LIMA1-202ENST00000394943 SLC15A2Q16348 729 aa9.12□□□□□ -0.95
LIMA1-202ENST00000394943 C8orf58Q8NAV2 365 aa9.12□□□□□ -0.95
LIMA1-202ENST00000394943 DDX21Q9NR30 783 aaKnown RBP eCLIP9.12□□□□□ -0.95
LIMA1-202ENST00000394943 CCDC87Q9NVE4 849 aa9.12□□□□□ -0.95
LIMA1-202ENST00000394943 CCNL1Q9UK58 526 aaPredicted RBP9.12□□□□□ -0.95
LIMA1-202ENST00000394943 COL11A2P13942 1736 aaPredicted RBP9.12□□□□□ -0.95
LIMA1-202ENST00000394943 ARFGEF1Q9Y6D6 1849 aa9.12□□□□□ -0.95
LIMA1-202ENST00000394943 ARHGAP45Q92619 1136 aa9.12□□□□□ -0.95
LIMA1-202ENST00000394943 CRKLP46109 303 aaKnown RBP9.12□□□□□ -0.95
LIMA1-202ENST00000394943 A0A087WZG4 1122 aa9.11□□□□□ -0.95
LIMA1-202ENST00000394943 SLC39A6Q13433 755 aa9.11□□□□□ -0.95
LIMA1-202ENST00000394943 ANO8Q9HCE9 1232 aaPredicted RBP9.11□□□□□ -0.95
LIMA1-202ENST00000394943 TNRC6CQ9HCJ0 1690 aaKnown RBP9.11□□□□□ -0.95
LIMA1-202ENST00000394943 C10orf71Q711Q0 1435 aa9.11□□□□□ -0.95
LIMA1-202ENST00000394943 TRIM28Q13263 835 aaKnown RBP9.11□□□□□ -0.95
LIMA1-202ENST00000394943 CLEC4GQ6UXB4 293 aa9.11□□□□□ -0.95
LIMA1-202ENST00000394943 TTC5Q8N0Z6 440 aa9.11□□□□□ -0.95
LIMA1-202ENST00000394943 USP42Q9H9J4 1324 aaKnown RBP9.11□□□□□ -0.95
LIMA1-202ENST00000394943 EN1Q05925 392 aaPredicted RBP9.11□□□□□ -0.95
LIMA1-202ENST00000394943 STARD3NLO95772 234 aa9.1□□□□□ -0.95
LIMA1-202ENST00000394943 ATP6V1AP38606 617 aa9.1□□□□□ -0.95
LIMA1-202ENST00000394943 DNAJC10Q8IXB1 793 aa9.1□□□□□ -0.95
LIMA1-202ENST00000394943 USP16Q9Y5T5 823 aa9.1□□□□□ -0.95
LIMA1-202ENST00000394943 AMIGO3Q86WK7 504 aa9.1□□□□□ -0.95
LIMA1-202ENST00000394943 MRPL50Q8N5N7 158 aaKnown RBP9.1□□□□□ -0.95
LIMA1-202ENST00000394943 UTYO14607 1347 aa9.1□□□□□ -0.95
LIMA1-202ENST00000394943 CAMTA2O94983 1202 aa9.1□□□□□ -0.95
LIMA1-202ENST00000394943 TM4SF1P30408 202 aa9.1□□□□□ -0.95
LIMA1-202ENST00000394943 CNGB1Q14028 1251 aaPredicted RBP9.1□□□□□ -0.95
LIMA1-202ENST00000394943 BCL2L12Q9HB09 334 aa9.1□□□□□ -0.95
LIMA1-202ENST00000394943 HYPKQ9NX55 129 aa9.1□□□□□ -0.95
LIMA1-202ENST00000394943 NARFQ9UHQ1 456 aa9.1□□□□□ -0.95
LIMA1-202ENST00000394943 ADCY9O60503 1353 aa9.09□□□□□ -0.95
LIMA1-202ENST00000394943 PTPRCP08575 1304 aa9.09□□□□□ -0.95
LIMA1-202ENST00000394943 TSPYL6Q8N831 410 aa9.09□□□□□ -0.95
LIMA1-202ENST00000394943 SF3B2Q13435 895 aaKnown RBP9.09□□□□□ -0.95
LIMA1-202ENST00000394943 DBF4Q9UBU7 674 aaPredicted RBP9.09□□□□□ -0.95
LIMA1-202ENST00000394943 TWISTNBQ3B726 338 aaPredicted RBP9.09□□□□□ -0.95
LIMA1-202ENST00000394943 CCDC30Q5VVM6 783 aa9.09□□□□□ -0.95
LIMA1-202ENST00000394943 KAT6BQ8WYB5 2073 aa9.09□□□□□ -0.95
LIMA1-202ENST00000394943 ZNF646O15015 1829 aaPredicted RBP9.08□□□□□ -0.96
LIMA1-202ENST00000394943 PRAMEF22A3QJZ6 481 aa9.08□□□□□ -0.96
LIMA1-202ENST00000394943 KLRG2A4D1S0 409 aaPredicted RBP9.08□□□□□ -0.96
LIMA1-202ENST00000394943 EXOSC9Q06265 439 aaKnown RBP9.08□□□□□ -0.96
LIMA1-202ENST00000394943 DEFB132Q7Z7B7 95 aa9.08□□□□□ -0.96
LIMA1-202ENST00000394943 CDCA7LQ96GN5 454 aa9.08□□□□□ -0.96
LIMA1-202ENST00000394943 MAP3K15Q6ZN16 1313 aa9.08□□□□□ -0.96
LIMA1-202ENST00000394943 RARSP54136 660 aaKnown RBP9.08□□□□□ -0.96
LIMA1-202ENST00000394943 ZBTB1Q9Y2K1 713 aa9.08□□□□□ -0.96
LIMA1-202ENST00000394943 ABCC4O15439 1325 aa9.07□□□□□ -0.96
LIMA1-202ENST00000394943 ARAP2Q8WZ64 1704 aa9.07□□□□□ -0.96
LIMA1-202ENST00000394943 A0A0G2JS52 829 aa9.07□□□□□ -0.96
LIMA1-202ENST00000394943 MYT1Q01538 1121 aa9.07□□□□□ -0.96
LIMA1-202ENST00000394943 ZNF34Q8IZ26 560 aa9.07□□□□□ -0.96
LIMA1-202ENST00000394943 TSR2Q969E8 191 aaKnown RBP9.07□□□□□ -0.96
LIMA1-202ENST00000394943 SNED1Q8TER0 1413 aa9.07□□□□□ -0.96
LIMA1-202ENST00000394943 ISCA1Q9BUE6 129 aa9.07□□□□□ -0.96
LIMA1-202ENST00000394943 MIS18AQ9NYP9 233 aa9.07□□□□□ -0.96
LIMA1-202ENST00000394943 ZBTB22O15209 634 aa9.07□□□□□ -0.96
LIMA1-202ENST00000394943 RTL9Q8NET4 1388 aa9.06□□□□□ -0.96
LIMA1-202ENST00000394943 COL23A1Q86Y22 540 aaPredicted RBP9.06□□□□□ -0.96
LIMA1-202ENST00000394943 PLBD2Q8NHP8 589 aa9.06□□□□□ -0.96
LIMA1-202ENST00000394943 STK32BQ9NY57 414 aa9.06□□□□□ -0.96
LIMA1-202ENST00000394943 GYS1P13807 737 aa9.06□□□□□ -0.96
LIMA1-202ENST00000394943 PTGER2P43116 358 aa9.06□□□□□ -0.96
LIMA1-202ENST00000394943 HNRNPUQ00839 825 aaKnown RBP eCLIP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 142.9 ms