RNA–Protein interactions for RNA: ENST00000357162.6

VPS13B-202, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13B, Length 14,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-202ENST00000357162 VPS37DQ86XT2 251 aa7.59□□□□□ -1.19
VPS13B-202ENST00000357162 EIF5P55010 431 aaKnown RBP7.59□□□□□ -1.19
VPS13B-202ENST00000357162 FKBP15Q5T1M5 1219 aa7.59□□□□□ -1.19
VPS13B-202ENST00000357162 CCDC12Q8WUD4 166 aaPredicted RBP7.59□□□□□ -1.19
VPS13B-202ENST00000357162 RNF41Q9H4P4 317 aaPredicted RBP7.59□□□□□ -1.19
VPS13B-202ENST00000357162 TBC1D2Q9BYX2 928 aa7.59□□□□□ -1.19
VPS13B-202ENST00000357162 RASSF4Q9H2L5 321 aa7.59□□□□□ -1.19
VPS13B-202ENST00000357162 PPP1R2P41236 205 aa7.59□□□□□ -1.19
VPS13B-202ENST00000357162 CFAP100Q494V2 611 aa7.59□□□□□ -1.19
VPS13B-202ENST00000357162 CNPY4Q8N129 248 aa7.59□□□□□ -1.19
VPS13B-202ENST00000357162 TSPYL4Q9UJ04 414 aa7.59□□□□□ -1.19
VPS13B-202ENST00000357162 PAK3O75914 559 aaPredicted RBP7.59□□□□□ -1.19
VPS13B-202ENST00000357162 ZNF165P49910 485 aa7.59□□□□□ -1.19
VPS13B-202ENST00000357162 DDX46Q7L014 1031 aaKnown RBP7.59□□□□□ -1.19
VPS13B-202ENST00000357162 KCNG4Q8TDN1 519 aa7.59□□□□□ -1.19
VPS13B-202ENST00000357162 GTF2A1P52655 376 aaPredicted RBP7.59□□□□□ -1.19
VPS13B-202ENST00000357162 CCDC178Q5BJE1 867 aa7.59□□□□□ -1.19
VPS13B-202ENST00000357162 MYO18AQ92614 2054 aaKnown RBP7.59□□□□□ -1.19
VPS13B-202ENST00000357162 BUB1BO60566 1050 aaPredicted RBP7.59□□□□□ -1.2
VPS13B-202ENST00000357162 MX1P20591 662 aa7.59□□□□□ -1.2
VPS13B-202ENST00000357162 TRIM14Q14142 442 aa7.59□□□□□ -1.2
VPS13B-202ENST00000357162 IQSEC3Q9UPP2 1182 aaPredicted RBP7.59□□□□□ -1.2
VPS13B-202ENST00000357162 IQGAP2Q13576 1575 aa7.59□□□□□ -1.2
VPS13B-202ENST00000357162 TTC12Q9H892 705 aaPredicted RBP7.58□□□□□ -1.2
VPS13B-202ENST00000357162 PDRG1Q9NUG6 133 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 TTC21BQ7Z4L5 1316 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 CFAP43Q8NDM7 1665 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 ABCA10Q8WWZ4 1543 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 MIPOL1Q8TD10 442 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 FERMT1Q9BQL6 677 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 HDAC9Q9UKV0 1011 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 LMOD2Q6P5Q4 547 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 WDR66Q8TBY9 1149 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 TNNT1P13805 278 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 CCDC158Q5M9N0 1113 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 CSB-PGBD3P0DP91 1061 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 FOXD4L5Q5VV16 416 aaPredicted RBP7.58□□□□□ -1.2
VPS13B-202ENST00000357162 FOXD4L4Q8WXT5 416 aaPredicted RBP7.58□□□□□ -1.2
VPS13B-202ENST00000357162 ARHGAP5Q13017 1502 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 CEP135Q66GS9 1140 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 TWISTNBQ3B726 338 aaPredicted RBP7.58□□□□□ -1.2
VPS13B-202ENST00000357162 SURF6O75683 361 aaKnown RBP7.58□□□□□ -1.2
VPS13B-202ENST00000357162 LIG1P18858 919 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 NAP1L3Q99457 506 aaPredicted RBP7.58□□□□□ -1.2
VPS13B-202ENST00000357162 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.58□□□□□ -1.2
VPS13B-202ENST00000357162 SCAF11Q99590 1463 aaKnown RBP7.58□□□□□ -1.2
VPS13B-202ENST00000357162 TDRD9Q8NDG6 1382 aaKnown RBP7.58□□□□□ -1.2
VPS13B-202ENST00000357162 SEPT6Q14141 434 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 ASXL1Q8IXJ9 1541 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 PIK3C2GO75747 1445 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 CCDC77Q9BR77 488 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 CCDC110Q8TBZ0 833 aa7.58□□□□□ -1.2
VPS13B-202ENST00000357162 EPRSP07814 1512 aaKnown RBP7.57□□□□□ -1.2
VPS13B-202ENST00000357162 CTAGE9A4FU28 777 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 ANKRD24Q8TF21 1146 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 GOLGA1Q92805 767 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 MED4Q9NPJ6 270 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 ARMC9Q7Z3E5 817 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 PAIP2Q9BPZ3 127 aaKnown RBP7.57□□□□□ -1.2
VPS13B-202ENST00000357162 MTHFSP49914 203 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 HDXQ7Z353 690 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 TRIM34Q9BYJ4 488 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 BIVM-ERCC5R4GMW8 1640 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 A0A0G2JS52 829 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 ATP5DP30049 168 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 RAB3GAP1Q15042 981 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 SUDS3Q9H7L9 328 aaPredicted RBP7.57□□□□□ -1.2
VPS13B-202ENST00000357162 SNW1Q13573 536 aaKnown RBP7.57□□□□□ -1.2
VPS13B-202ENST00000357162 RRP7AQ9Y3A4 280 aaKnown RBP7.57□□□□□ -1.2
VPS13B-202ENST00000357162 ADCY5O95622 1261 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 NBPF7P0C2Y1 421 aaPredicted RBP7.57□□□□□ -1.2
VPS13B-202ENST00000357162 PPFIA1Q13136 1202 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 PLEKHO1Q53GL0 409 aaPredicted RBP7.57□□□□□ -1.2
VPS13B-202ENST00000357162 SHANK2Q9UPX8 1470 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 ATP8B1O43520 1251 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 GTF2F1P35269 517 aaKnown RBP eCLIP7.57□□□□□ -1.22e-7■■■■■ 26.9
VPS13B-202ENST00000357162 AMPD3Q01432 767 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 BCL2L13Q9BXK5 485 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 STIM2Q9P246 746 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 KIF3CO14782 793 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 KDM5DQ9BY66 1539 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 LMBR1Q8WVP7 490 aa7.57□□□□□ -1.2
VPS13B-202ENST00000357162 SSH2Q76I76 1423 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 A0A1B0GUL7 405 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 UTP14CQ5TAP6 766 aaKnown RBP7.56□□□□□ -1.2
VPS13B-202ENST00000357162 STXBP4Q6ZWJ1 553 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 ERO1AQ96HE7 468 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 TULP1O00294 542 aaPredicted RBP7.56□□□□□ -1.2
VPS13B-202ENST00000357162 MAP2K1Q02750 393 aaPredicted RBP7.56□□□□□ -1.2
VPS13B-202ENST00000357162 TRAF1Q13077 416 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 NESP48681 1621 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 ZBTB7CA1YPR0 619 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 ABCA1O95477 2261 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 XRCC6P12956 609 aaKnown RBP eCLIP7.56□□□□□ -1.29e-6■■■□□ 15.7
VPS13B-202ENST00000357162 VPS53Q5VIR6 699 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 USP37Q86T82 979 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 TTC21AQ8NDW8 1320 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 PARD3Q8TEW0 1356 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 CNGA4Q8IV77 575 aa7.56□□□□□ -1.2
VPS13B-202ENST00000357162 STK26Q9P289 416 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms