RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 CHPF2Q9P2E5 772 aa24.4■■□□□ 1.5
CHMP4A-201ENST00000347519 RNF123Q5XPI4 1314 aa24.4■■□□□ 1.5
CHMP4A-201ENST00000347519 CACNA1FO60840 1977 aa24.39■■□□□ 1.49
CHMP4A-201ENST00000347519 PLIN1O60240 522 aa24.39■■□□□ 1.49
CHMP4A-201ENST00000347519 ATP6V1AP38606 617 aa24.39■■□□□ 1.49
CHMP4A-201ENST00000347519 PIP4K2AP48426 406 aaPredicted RBP24.39■■□□□ 1.49
CHMP4A-201ENST00000347519 PDIA6Q15084 440 aa24.39■■□□□ 1.49
CHMP4A-201ENST00000347519 G2E3Q7L622 706 aa24.39■■□□□ 1.49
CHMP4A-201ENST00000347519 A1BGP04217 495 aa24.38■■□□□ 1.49
CHMP4A-201ENST00000347519 SLC4A2P04920 1241 aa24.38■■□□□ 1.49
CHMP4A-201ENST00000347519 TAF1LQ8IZX4 1826 aa24.37■■□□□ 1.49
CHMP4A-201ENST00000347519 CYP19A1P11511 503 aaPredicted RBP24.37■■□□□ 1.49
CHMP4A-201ENST00000347519 NBPF26B4DH59 902 aa24.36■■□□□ 1.49
CHMP4A-201ENST00000347519 APBA3O96018 575 aa24.36■■□□□ 1.49
CHMP4A-201ENST00000347519 BRPF1P55201 1214 aaPredicted RBP24.36■■□□□ 1.49
CHMP4A-201ENST00000347519 RRP1P56182 461 aaKnown RBP24.36■■□□□ 1.49
CHMP4A-201ENST00000347519 NBPF14Q5TI25 921 aa24.36■■□□□ 1.49
CHMP4A-201ENST00000347519 NBPF10Q6P3W6 841 aaKnown RBP24.36■■□□□ 1.49
CHMP4A-201ENST00000347519 NBPF15Q8N660 670 aa24.36■■□□□ 1.49
CHMP4A-201ENST00000347519 NOB1Q9ULX3 412 aaKnown RBP24.36■■□□□ 1.49
CHMP4A-201ENST00000347519 TNNQ9UQP3 1299 aa24.36■■□□□ 1.49
CHMP4A-201ENST00000347519 MYH14Q7Z406 1995 aaKnown RBP24.36■■□□□ 1.49
CHMP4A-201ENST00000347519 LINC00116Q8NCU8 138 aa24.35■■□□□ 1.49
CHMP4A-201ENST00000347519 STK31Q9BXU1 1019 aa24.35■■□□□ 1.49
CHMP4A-201ENST00000347519 TEX13AQ9BXU3 409 aaPredicted RBP24.35■■□□□ 1.49
CHMP4A-201ENST00000347519 RREB1Q92766 1687 aa24.34■■□□□ 1.49
CHMP4A-201ENST00000347519 LRP10Q7Z4F1 713 aa24.34■■□□□ 1.49
CHMP4A-201ENST00000347519 FRAT1Q92837 279 aaPredicted RBP24.34■■□□□ 1.49
CHMP4A-201ENST00000347519 PHAXQ9H814 394 aaKnown RBP24.34■■□□□ 1.49
CHMP4A-201ENST00000347519 DDX21Q9NR30 783 aaKnown RBP eCLIP24.34■■□□□ 1.49
CHMP4A-201ENST00000347519 LRRC4BQ9NT99 713 aa24.34■■□□□ 1.49
CHMP4A-201ENST00000347519 CCNL1Q9UK58 526 aaPredicted RBP24.34■■□□□ 1.49
CHMP4A-201ENST00000347519 PROM2Q8N271 834 aa24.33■■□□□ 1.49
CHMP4A-201ENST00000347519 DBF4Q9UBU7 674 aaPredicted RBP24.33■■□□□ 1.49
CHMP4A-201ENST00000347519 STARD3NLO95772 234 aa24.32■■□□□ 1.48
CHMP4A-201ENST00000347519 MYL6BP14649 208 aa24.32■■□□□ 1.48
CHMP4A-201ENST00000347519 PLSCR1O15162 318 aa24.31■■□□□ 1.48
CHMP4A-201ENST00000347519 INTS5Q6P9B9 1019 aaKnown RBP24.31■■□□□ 1.48
CHMP4A-201ENST00000347519 ZBTB1Q9Y2K1 713 aa24.3■■□□□ 1.48
CHMP4A-201ENST00000347519 RGPD3A6NKT7 1758 aaPredicted RBP24.3■■□□□ 1.48
CHMP4A-201ENST00000347519 RGPD4Q7Z3J3 1758 aa24.3■■□□□ 1.48
CHMP4A-201ENST00000347519 ERBB4Q15303 1308 aa24.3■■□□□ 1.48
CHMP4A-201ENST00000347519 CRKLP46109 303 aaKnown RBP24.29■■□□□ 1.48
CHMP4A-201ENST00000347519 C20orf194Q5TEA3 1177 aa24.29■■□□□ 1.48
CHMP4A-201ENST00000347519 CHMP4AQ9BY43 222 aa24.29■■□□□ 1.48
CHMP4A-201ENST00000347519 KIF16BQ96L93 1317 aa24.29■■□□□ 1.48
CHMP4A-201ENST00000347519 FLIIQ13045 1269 aa24.29■■□□□ 1.48
CHMP4A-201ENST00000347519 TXNRD1Q16881 649 aa24.29■■□□□ 1.48
CHMP4A-201ENST00000347519 C4BP0C0L5 1744 aa24.28■■□□□ 1.48
CHMP4A-201ENST00000347519 CANXP27824 592 aaKnown RBP24.28■■□□□ 1.48
CHMP4A-201ENST00000347519 IRX6P78412 446 aaPredicted RBP24.28■■□□□ 1.48
CHMP4A-201ENST00000347519 ZKSCAN2Q63HK3 967 aa24.28■■□□□ 1.48
CHMP4A-201ENST00000347519 CCDC87Q9NVE4 849 aa24.28■■□□□ 1.48
CHMP4A-201ENST00000347519 HYPKQ9NX55 129 aa24.28■■□□□ 1.48
CHMP4A-201ENST00000347519 TRIM27P14373 513 aa24.27■■□□□ 1.48
CHMP4A-201ENST00000347519 SLC27A3Q5K4L6 730 aa24.26■■□□□ 1.47
CHMP4A-201ENST00000347519 ATF7IPQ6VMQ6 1270 aa24.26■■□□□ 1.47
CHMP4A-201ENST00000347519 XAGE3Q8WTP9 111 aa24.26■■□□□ 1.47
CHMP4A-201ENST00000347519 RLBP1P12271 317 aa24.25■■□□□ 1.47
CHMP4A-201ENST00000347519 EN1Q05925 392 aaPredicted RBP24.25■■□□□ 1.47
CHMP4A-201ENST00000347519 AIMP1Q12904 312 aaKnown RBP24.25■■□□□ 1.47
CHMP4A-201ENST00000347519 COPS6Q7L5N1 327 aa24.25■■□□□ 1.47
CHMP4A-201ENST00000347519 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.25■■□□□ 1.47
CHMP4A-201ENST00000347519 CNTNAP4Q9C0A0 1308 aa24.24■■□□□ 1.47
CHMP4A-201ENST00000347519 SF3B2Q13435 895 aaKnown RBP24.24■■□□□ 1.47
CHMP4A-201ENST00000347519 TTLL7Q6ZT98 887 aa24.24■■□□□ 1.47
CHMP4A-201ENST00000347519 SMIM5Q71RC9 77 aa24.24■■□□□ 1.47
CHMP4A-201ENST00000347519 DEFB132Q7Z7B7 95 aa24.24■■□□□ 1.47
CHMP4A-201ENST00000347519 PANK1Q8TE04 598 aa24.24■■□□□ 1.47
CHMP4A-201ENST00000347519 ARHGAP45Q92619 1136 aa24.24■■□□□ 1.47
CHMP4A-201ENST00000347519 CLUAP1Q96AJ1 413 aa24.24■■□□□ 1.47
CHMP4A-201ENST00000347519 CAMKK2Q96RR4 588 aa24.24■■□□□ 1.47
CHMP4A-201ENST00000347519 PTPRCP08575 1304 aa24.23■■□□□ 1.47
CHMP4A-201ENST00000347519 F6X3S4 739 aa24.23■■□□□ 1.47
CHMP4A-201ENST00000347519 IPO8O15397 1037 aaKnown RBP24.23■■□□□ 1.47
CHMP4A-201ENST00000347519 FKBP5Q13451 457 aaPredicted RBP24.23■■□□□ 1.47
CHMP4A-201ENST00000347519 EZH2Q15910 746 aaKnown RBP24.23■■□□□ 1.47
CHMP4A-201ENST00000347519 RC3H1Q5TC82 1133 aaKnown RBP24.22■■□□□ 1.47
CHMP4A-201ENST00000347519 AMIGO3Q86WK7 504 aa24.22■■□□□ 1.47
CHMP4A-201ENST00000347519 ZNF330Q9Y3S2 320 aaPredicted RBP24.22■■□□□ 1.47
CHMP4A-201ENST00000347519 SRCAPQ6ZRS2 3230 aa24.22■■□□□ 1.47
CHMP4A-201ENST00000347519 ADCY9O60503 1353 aa24.21■■□□□ 1.47
CHMP4A-201ENST00000347519 EIF5P55010 431 aaKnown RBP24.21■■□□□ 1.47
CHMP4A-201ENST00000347519 API5Q9BZZ5 524 aaKnown RBP24.21■■□□□ 1.47
CHMP4A-201ENST00000347519 NUP188Q5SRE5 1749 aa24.21■■□□□ 1.47
CHMP4A-201ENST00000347519 IL6STP40189 918 aaPredicted RBP24.2■■□□□ 1.46
CHMP4A-201ENST00000347519 ARFGEF2Q9Y6D5 1785 aa24.2■■□□□ 1.46
CHMP4A-201ENST00000347519 UBR3Q6ZT12 1888 aa24.19■■□□□ 1.46
CHMP4A-201ENST00000347519 DZIP1LQ8IYY4 767 aaKnown RBP24.19■■□□□ 1.46
CHMP4A-201ENST00000347519 ABCC4O15439 1325 aa24.19■■□□□ 1.46
CHMP4A-201ENST00000347519 PI4KAP2A4QPH2 592 aa24.18■■□□□ 1.46
CHMP4A-201ENST00000347519 PI4KAP1Q8N8J0 262 aa24.18■■□□□ 1.46
CHMP4A-201ENST00000347519 GNPATO15228 680 aa24.17■■□□□ 1.46
CHMP4A-201ENST00000347519 RPS6KA4O75676 772 aa24.17■■□□□ 1.46
CHMP4A-201ENST00000347519 BAG6P46379 1132 aa24.17■■□□□ 1.46
CHMP4A-201ENST00000347519 PDE3AQ14432 1141 aa24.17■■□□□ 1.46
CHMP4A-201ENST00000347519 KSR2Q6VAB6 950 aa24.17■■□□□ 1.46
CHMP4A-201ENST00000347519 TMEM57Q8N5G2 664 aa24.17■■□□□ 1.46
CHMP4A-201ENST00000347519 TUBGCP6Q96RT7 1819 aa24.17■■□□□ 1.46
CHMP4A-201ENST00000347519 N4BP2Q86UW6 1770 aaPredicted RBP24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms