RNA–Protein interactions for RNA: YMR067C

UBX4, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX4, Length 1,251 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX4	YMR067C	SYP1	P25623	870 aa	Known RBP	4.84	□□□□□ -1.63
UBX4	YMR067C	PIK1	P39104	1066 aa		4.84	□□□□□ -1.63
UBX4	YMR067C	CNN1	P43618	361 aa		4.84	□□□□□ -1.63
UBX4	YMR067C	SNO2	P53823	222 aa		4.84	□□□□□ -1.63
UBX4	YMR067C	MRPL22	P53881	309 aa		4.84	□□□□□ -1.63
UBX4	YMR067C	RAT1	Q02792	1006 aa	Known RBP	4.84	□□□□□ -1.63
UBX4	YMR067C	YDL177C	Q12257	170 aa		4.84	□□□□□ -1.63
UBX4	YMR067C	SPO21	Q12411	609 aa		4.84	□□□□□ -1.63
UBX4	YMR067C	GCR1	P07261	785 aa		4.83	□□□□□ -1.64
UBX4	YMR067C	SPS1	P08458	490 aa		4.83	□□□□□ -1.64
UBX4	YMR067C	SNF5	P18480	905 aa		4.83	□□□□□ -1.64
UBX4	YMR067C	PRP6	P19735	899 aa	Predicted RBP	4.83	□□□□□ -1.64
UBX4	YMR067C	DBP5	P20449	482 aa	Known RBP	4.83	□□□□□ -1.64
UBX4	YMR067C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.83	□□□□□ -1.64	not detected
UBX4	YMR067C	RTT10	Q08924	1013 aa		4.83	□□□□□ -1.64
UBX4	YMR067C	RAD27	P26793	382 aa		4.82	□□□□□ -1.64
UBX4	YMR067C	ETP1	P38748	585 aa	Known RBP	4.82	□□□□□ -1.64
UBX4	YMR067C	GPB2	P39717	880 aa		4.82	□□□□□ -1.64
UBX4	YMR067C	TMA46	Q12000	345 aa	Known RBP	4.82	□□□□□ -1.64
UBX4	YMR067C	SEC26	P41810	973 aa	Known RBP	4.81	□□□□□ -1.64
UBX4	YMR067C	HNT2	P49775	206 aa		4.81	□□□□□ -1.64
UBX4	YMR067C	RIM8	P53179	542 aa		4.81	□□□□□ -1.64
UBX4	YMR067C	RCL1	Q08096	367 aa	Predicted RBP	4.81	□□□□□ -1.64
UBX4	YMR067C	RSB1	Q08417	382 aa		4.81	□□□□□ -1.64
UBX4	YMR067C	SOD2	P00447	233 aa		4.8	□□□□□ -1.64
UBX4	YMR067C	PEP7	P32609	515 aa		4.8	□□□□□ -1.64
UBX4	YMR067C	MNR2	P35724	969 aa		4.79	□□□□□ -1.64
UBX4	YMR067C	MPH1	P40562	993 aa		4.79	□□□□□ -1.64
UBX4	YMR067C	OYE2	Q03558	400 aa	Known RBP	4.79	□□□□□ -1.64
UBX4	YMR067C	GNT1	Q12096	491 aa		4.79	□□□□□ -1.64
UBX4	YMR067C	MLS1	P30952	554 aa		4.78	□□□□□ -1.64
UBX4	YMR067C	PET112	P33893	541 aa		4.78	□□□□□ -1.64
UBX4	YMR067C	THI80	P35202	319 aa		4.78	□□□□□ -1.64
UBX4	YMR067C	AIM3	P38266	947 aa	Known RBP	4.78	□□□□□ -1.64
UBX4	YMR067C	TIF35	Q04067	274 aa	Known RBP	4.78	□□□□□ -1.64
UBX4	YMR067C	YER152C	P10356	443 aa		4.77	□□□□□ -1.65
UBX4	YMR067C	CDC34	P14682	295 aa		4.77	□□□□□ -1.65
UBX4	YMR067C	NAP1	P25293	417 aa	Known RBP	4.77	□□□□□ -1.65
UBX4	YMR067C	RER2	P35196	286 aa		4.77	□□□□□ -1.65
UBX4	YMR067C	ESC8	Q08119	714 aa		4.77	□□□□□ -1.65
UBX4	YMR067C	YOR352W	Q08816	343 aa		4.77	□□□□□ -1.65
UBX4	YMR067C	RPS13	P05756	151 aa	Known RBP	4.76	□□□□□ -1.65
UBX4	YMR067C	LYP1	P32487	611 aa		4.76	□□□□□ -1.65
UBX4	YMR067C	DUT1	P33317	147 aa		4.76	□□□□□ -1.65
UBX4	YMR067C	MET10	P39692	1035 aa		4.76	□□□□□ -1.65
UBX4	YMR067C	ATG13	Q06628	738 aa		4.76	□□□□□ -1.65
UBX4	YMR067C	YCR015C	P25616	317 aa		4.75	□□□□□ -1.65
UBX4	YMR067C	MCM7	P38132	845 aa		4.75	□□□□□ -1.65
UBX4	YMR067C	YDR132C	Q03900	495 aa		4.75	□□□□□ -1.65
UBX4	YMR067C	SGD1	Q06132	899 aa		4.75	□□□□□ -1.65
UBX4	YMR067C	YPL277C	Q08989	487 aa		4.75	□□□□□ -1.65
UBX4	YMR067C	TRP2	P00899	507 aa	Known RBP	4.74	□□□□□ -1.65
UBX4	YMR067C	BAS1	P22035	811 aa		4.74	□□□□□ -1.65
UBX4	YMR067C	RFC5	P38251	354 aa		4.74	□□□□□ -1.65
UBX4	YMR067C	SNF7	P39929	240 aa	Known RBP	4.74	□□□□□ -1.65
UBX4	YMR067C	RSM24	Q03976	319 aa		4.74	□□□□□ -1.65
UBX4	YMR067C	SVF1	Q05515	481 aa		4.74	□□□□□ -1.65
UBX4	YMR067C	CYC1	P00044	109 aa	Predicted RBP	4.73	□□□□□ -1.65
UBX4	YMR067C	THS1	P04801	734 aa	Known RBP	4.73	□□□□□ -1.65
UBX4	YMR067C	KIN2	P13186	1147 aa	Known RBP	4.73	□□□□□ -1.65
UBX4	YMR067C	YKL222C	P35995	705 aa		4.73	□□□□□ -1.65
UBX4	YMR067C	ABZ1	P37254	787 aa	Predicted RBP	4.73	□□□□□ -1.65
UBX4	YMR067C	RRT14	P40470	206 aa		4.73	□□□□□ -1.65
UBX4	YMR067C	SIZ1	Q04195	904 aa		4.73	□□□□□ -1.65
UBX4	YMR067C	ACM1	Q08981	209 aa		4.73	□□□□□ -1.65
UBX4	YMR067C	SVS1	Q12254	260 aa		4.73	□□□□□ -1.65
UBX4	YMR067C	RKM4	Q12504	494 aa		4.73	□□□□□ -1.65
UBX4	YMR067C	RPL11A	P0C0W9	174 aa	Known RBP	4.72	□□□□□ -1.65
UBX4	YMR067C	TOD6	P34219	525 aa		4.72	□□□□□ -1.65
UBX4	YMR067C	FLR1	P38124	548 aa		4.72	□□□□□ -1.65
UBX4	YMR067C	LAM1	P38851	1228 aa		4.72	□□□□□ -1.65
UBX4	YMR067C	GEM1	P39722	662 aa		4.72	□□□□□ -1.65
UBX4	YMR067C	KRI1	P42846	591 aa	Known RBP	4.72	□□□□□ -1.65
UBX4	YMR067C	EEB1	Q02891	456 aa		4.72	□□□□□ -1.65
UBX4	YMR067C	GCN5	Q03330	439 aa		4.72	□□□□□ -1.65
UBX4	YMR067C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.72	□□□□□ -1.65	not detected
UBX4	YMR067C	RPL11B	Q3E757	174 aa	Predicted RBP	4.72	□□□□□ -1.65
UBX4	YMR067C	CLN2	P20438	545 aa		4.71	□□□□□ -1.66
UBX4	YMR067C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.71	□□□□□ -1.66	not detected
UBX4	YMR067C	DOM34	P33309	386 aa		4.71	□□□□□ -1.66
UBX4	YMR067C	UGA2	P38067	497 aa		4.71	□□□□□ -1.66
UBX4	YMR067C	PNT1	P38969	423 aa		4.71	□□□□□ -1.66
UBX4	YMR067C	MEF2	P39677	819 aa		4.71	□□□□□ -1.66
UBX4	YMR067C	GIP4	P39732	760 aa		4.71	□□□□□ -1.66
UBX4	YMR067C	YFL054C	P43549	646 aa		4.71	□□□□□ -1.66
UBX4	YMR067C	TYW3	P53177	273 aa		4.71	□□□□□ -1.66
UBX4	YMR067C	SPO20	Q04359	397 aa		4.71	□□□□□ -1.66
UBX4	YMR067C	SPP382	Q06411	708 aa	Predicted RBP	4.71	□□□□□ -1.66
UBX4	YMR067C	YLR358C	O13565	187 aa		4.7	□□□□□ -1.66
UBX4	YMR067C	ACE2	P21192	770 aa		4.7	□□□□□ -1.66
UBX4	YMR067C	SLA2	P33338	968 aa		4.7	□□□□□ -1.66
UBX4	YMR067C	PBP1	P53297	722 aa	Known RBP	4.7	□□□□□ -1.66
UBX4	YMR067C	CLU1	Q03690	1277 aa	Known RBP	4.7	□□□□□ -1.66
UBX4	YMR067C	RIB2	Q12362	591 aa	Known RBP	4.7	□□□□□ -1.66
UBX4	YMR067C	INO1	P11986	533 aa		4.69	□□□□□ -1.66
UBX4	YMR067C	YKL107W	P34251	309 aa		4.69	□□□□□ -1.66
UBX4	YMR067C	MXR1	P40029	184 aa		4.69	□□□□□ -1.66
UBX4	YMR067C	TAF1	P46677	1066 aa		4.69	□□□□□ -1.66
UBX4	YMR067C	YGR053C	P53234	283 aa		4.69	□□□□□ -1.66
UBX4	YMR067C	GAL10	P04397	699 aa		4.68	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 139.6 ms