RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USA1	YML029W	UTP4	Q06679	776 aa	Known RBP	4.38	□□□□□ -1.71
USA1	YML029W	GET3	Q12154	354 aa	Known RBP	4.38	□□□□□ -1.71
USA1	YML029W	FOB1	O13329	566 aa		4.37	□□□□□ -1.71
USA1	YML029W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.37	□□□□□ -1.71	not detected
USA1	YML029W	AFT1	P22149	690 aa		4.37	□□□□□ -1.71
USA1	YML029W	BMH1	P29311	267 aa	Known RBP	4.37	□□□□□ -1.71
USA1	YML029W	UTR4	P32626	227 aa		4.37	□□□□□ -1.71
USA1	YML029W	TFC4	P33339	1025 aa		4.37	□□□□□ -1.71
USA1	YML029W	BIM1	P40013	344 aa		4.37	□□□□□ -1.71
USA1	YML029W	THI6	P41835	540 aa		4.37	□□□□□ -1.71
USA1	YML029W	MDR1	P53258	950 aa		4.37	□□□□□ -1.71
USA1	YML029W	PEX29	Q03370	554 aa		4.37	□□□□□ -1.71
USA1	YML029W	TMA64	Q04600	565 aa	Known RBP	4.37	□□□□□ -1.71
USA1	YML029W	COG8	Q04632	607 aa		4.37	□□□□□ -1.71
USA1	YML029W	SGD1	Q06132	899 aa		4.37	□□□□□ -1.71
USA1	YML029W	HEM1	P09950	548 aa	Predicted RBP	4.37	□□□□□ -1.71
USA1	YML029W	SNA3	P14359	133 aa		4.37	□□□□□ -1.71
USA1	YML029W	HCA4	P20448	770 aa	Known RBP	4.37	□□□□□ -1.71
USA1	YML029W	ACE2	P21192	770 aa		4.37	□□□□□ -1.71
USA1	YML029W	SDH2	P21801	266 aa		4.37	□□□□□ -1.71
USA1	YML029W	ROX1	P25042	368 aa		4.37	□□□□□ -1.71
USA1	YML029W	PGM1	P33401	570 aa	Known RBP	4.37	□□□□□ -1.71
USA1	YML029W	MAL33	P38157	468 aa		4.37	□□□□□ -1.71
USA1	YML029W	RFC5	P38251	354 aa		4.37	□□□□□ -1.71
USA1	YML029W	DAK2	P43550	591 aa		4.37	□□□□□ -1.71
USA1	YML029W	YFL040W	P43562	540 aa		4.37	□□□□□ -1.71
USA1	YML029W	SEC5	P89102	971 aa		4.37	□□□□□ -1.71
USA1	YML029W	KRS1	P15180	591 aa	Known RBP	4.36	□□□□□ -1.71
USA1	YML029W	BUD2	P33314	1104 aa		4.36	□□□□□ -1.71
USA1	YML029W	IXR1	P33417	597 aa		4.36	□□□□□ -1.71
USA1	YML029W	GPT2	P36148	743 aa		4.36	□□□□□ -1.71
USA1	YML029W	EDS1	P38073	919 aa		4.36	□□□□□ -1.71
USA1	YML029W	CIR1	P42940	261 aa		4.36	□□□□□ -1.71
USA1	YML029W	CUE3	P53137	624 aa	Known RBP	4.36	□□□□□ -1.71
USA1	YML029W	YLR326W	Q06170	240 aa	Known RBP	4.36	□□□□□ -1.71
USA1	YML029W	CUR1	Q06469	252 aa		4.36	□□□□□ -1.71
USA1	YML029W	PEX19	Q07418	342 aa		4.36	□□□□□ -1.71
USA1	YML029W	YOR296W	Q08748	1289 aa		4.36	□□□□□ -1.71
USA1	YML029W	PGK1	P00560	416 aa	Known RBP	4.36	□□□□□ -1.71
USA1	YML029W	HSP82	P02829	709 aa	Known RBP	4.36	□□□□□ -1.71
USA1	YML029W	KEX1	P09620	729 aa		4.36	□□□□□ -1.71
USA1	YML029W	TKL1	P23254	680 aa	Known RBP	4.36	□□□□□ -1.71
USA1	YML029W	MBR1	P23493	339 aa		4.36	□□□□□ -1.71
USA1	YML029W	RDS1	P25611	832 aa		4.36	□□□□□ -1.71
USA1	YML029W	ISW1	P38144	1129 aa		4.36	□□□□□ -1.71
USA1	YML029W	NUP82	P40368	713 aa		4.36	□□□□□ -1.71
USA1	YML029W	ASE1	P50275	885 aa		4.36	□□□□□ -1.71
USA1	YML029W	SLK19	Q08581	821 aa	Known RBP	4.36	□□□□□ -1.71
USA1	YML029W	ERP3	Q12403	225 aa		4.36	□□□□□ -1.71
USA1	YML029W	FKS1	P38631	1876 aa	Known RBP	4.35	□□□□□ -1.71
USA1	YML029W	COX6	P00427	148 aa		4.35	□□□□□ -1.71
USA1	YML029W	TVP38	P36164	337 aa		4.35	□□□□□ -1.71
USA1	YML029W	SUL1	P38359	859 aa		4.35	□□□□□ -1.71
USA1	YML029W	STT3	P39007	718 aa	Known RBP	4.35	□□□□□ -1.71
USA1	YML029W	PSF2	P40359	213 aa		4.35	□□□□□ -1.71
USA1	YML029W	PIL1	P53252	339 aa	Known RBP	4.35	□□□□□ -1.71
USA1	YML029W	ATF2	P53296	535 aa		4.35	□□□□□ -1.71
USA1	YML029W	ZPR1	P53303	486 aa	Known RBP	4.35	□□□□□ -1.71
USA1	YML029W	DSE4	P53753	1117 aa		4.35	□□□□□ -1.71
USA1	YML029W	DCS2	Q12123	353 aa		4.35	□□□□□ -1.71
USA1	YML029W	TRM11	Q12463	433 aa		4.35	□□□□□ -1.71
USA1	YML029W	CDC6	P09119	513 aa		4.35	□□□□□ -1.71
USA1	YML029W	TCP1	P12612	559 aa	Known RBP	4.35	□□□□□ -1.71
USA1	YML029W	WHI3	P34761	661 aa	Known RBP	4.35	□□□□□ -1.71
USA1	YML029W	YKT6	P36015	200 aa	Known RBP	4.35	□□□□□ -1.71
USA1	YML029W	YEL025C	P39991	1188 aa		4.35	□□□□□ -1.71
USA1	YML029W	DDP1	Q99321	188 aa	Known RBP	4.35	□□□□□ -1.71
USA1	YML029W	TAF13	P11747	167 aa		4.34	□□□□□ -1.71
USA1	YML029W	VPS1	P21576	704 aa	Known RBP	4.34	□□□□□ -1.71
USA1	YML029W	PAM1	P37304	830 aa	Known RBP	4.34	□□□□□ -1.71
USA1	YML029W	ARL1	P38116	183 aa	Known RBP	4.34	□□□□□ -1.71
USA1	YML029W	GAA1	P39012	614 aa		4.34	□□□□□ -1.71
USA1	YML029W	FYV10	P40492	516 aa		4.34	□□□□□ -1.71
USA1	YML029W	ORC4	P54791	529 aa		4.34	□□□□□ -1.71
USA1	YML029W	MSC6	Q08818	692 aa	Known RBP	4.34	□□□□□ -1.71
USA1	YML029W	MDM20	Q12387	796 aa	Known RBP	4.34	□□□□□ -1.71
USA1	YML029W	ARP6	Q12509	438 aa		4.34	□□□□□ -1.71
USA1	YML029W	SUV3	P32580	737 aa		4.34	□□□□□ -1.72
USA1	YML029W	SRP40	P32583	406 aa	Predicted RBP	4.34	□□□□□ -1.72
USA1	YML029W	VPS35	P34110	944 aa		4.34	□□□□□ -1.72
USA1	YML029W	DBP7	P36120	742 aa	Known RBP	4.34	□□□□□ -1.72
USA1	YML029W	CCT5	P40413	562 aa	Known RBP	4.34	□□□□□ -1.72
USA1	YML029W	RSM25	P40496	264 aa		4.34	□□□□□ -1.72
USA1	YML029W	GPD2	P41911	440 aa	Known RBP	4.34	□□□□□ -1.72
USA1	YML029W	VTC2	P43585	828 aa		4.34	□□□□□ -1.72
USA1	YML029W	JJJ3	P47138	172 aa		4.34	□□□□□ -1.72
USA1	YML029W	ECM30	Q06673	1274 aa		4.34	□□□□□ -1.72
USA1	YML029W	HFI1	Q12060	488 aa		4.34	□□□□□ -1.72
USA1	YML029W	SMC6	Q12749	1114 aa		4.34	□□□□□ -1.72
USA1	YML029W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.33	□□□□□ -1.72	not detected
USA1	YML029W	FRS2	P15625	503 aa	Known RBP	4.33	□□□□□ -1.72
USA1	YML029W	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.33	□□□□□ -1.72	not detected
USA1	YML029W	YGR153W	P48238	217 aa		4.33	□□□□□ -1.72
USA1	YML029W	HXK1	P04806	485 aa	Known RBP	4.33	□□□□□ -1.72
USA1	YML029W	SAM1	P10659	382 aa	Known RBP	4.33	□□□□□ -1.72
USA1	YML029W	REG2	P38232	338 aa		4.33	□□□□□ -1.72
USA1	YML029W	KSP1	P38691	1029 aa	Known RBP	4.33	□□□□□ -1.72
USA1	YML029W	RVS167	P39743	482 aa	Known RBP	4.33	□□□□□ -1.72
USA1	YML029W	FIS1	P40515	155 aa		4.33	□□□□□ -1.72
USA1	YML029W	YJR107W	P47145	328 aa		4.33	□□□□□ -1.72

Retrieved 100 of 5,963 RNA–protein pairs in 17.8 ms