RNA–Protein interactions for RNA: YDR121W

DPB4, Transcript of Subunit of DNA pol epsilon and of ISW2 chromatin accessibility complex, yeast

Gene DPB4, Length 591 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DPB4	YDR121W	FLO1	P32768	1537 aa		5.15	□□□□□ -1.58
DPB4	YDR121W	CYT1	P07143	309 aa		5.15	□□□□□ -1.59
DPB4	YDR121W	SWC3	P31376	625 aa		5.15	□□□□□ -1.59
DPB4	YDR121W	SRP40	P32583	406 aa	Predicted RBP	5.15	□□□□□ -1.59
DPB4	YDR121W	IOC3	P43596	787 aa		5.15	□□□□□ -1.59
DPB4	YDR121W	JJJ3	P47138	172 aa		5.15	□□□□□ -1.59
DPB4	YDR121W	VPS16	Q03308	798 aa		5.15	□□□□□ -1.59
DPB4	YDR121W	SGD1	Q06132	899 aa		5.15	□□□□□ -1.59
DPB4	YDR121W	HDA3	Q06623	655 aa		5.15	□□□□□ -1.59
DPB4	YDR121W	ACK1	Q07622	623 aa	Predicted RBP	5.15	□□□□□ -1.59
DPB4	YDR121W	PHO4	P07270	312 aa	Known RBP	5.14	□□□□□ -1.59
DPB4	YDR121W	RPS6A	P0CX37	236 aa	Known RBP	5.14	□□□□□ -1.59
DPB4	YDR121W	RPS6B	P0CX38	236 aa	Predicted RBP	5.14	□□□□□ -1.59
DPB4	YDR121W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	5.14	□□□□□ -1.59	not detected
DPB4	YDR121W	PEP7	P32609	515 aa		5.14	□□□□□ -1.59
DPB4	YDR121W	RAD24	P32641	659 aa		5.14	□□□□□ -1.59
DPB4	YDR121W	ISC10	P32645	267 aa		5.14	□□□□□ -1.59
DPB4	YDR121W	RPT3	P33298	428 aa	Known RBP	5.14	□□□□□ -1.59
DPB4	YDR121W	YKL091C	P33324	310 aa	Known RBP	5.14	□□□□□ -1.59
DPB4	YDR121W	MDJ1	P35191	511 aa		5.14	□□□□□ -1.59
DPB4	YDR121W	KEL1	P38853	1164 aa	Known RBP	5.14	□□□□□ -1.59
DPB4	YDR121W	JJJ2	P46997	583 aa		5.14	□□□□□ -1.59
DPB4	YDR121W	LYS5	P50113	272 aa		5.14	□□□□□ -1.59
DPB4	YDR121W	YLR225C	Q05948	407 aa	Known RBP	5.14	□□□□□ -1.59
DPB4	YDR121W	PPM2	Q08282	695 aa		5.14	□□□□□ -1.59
DPB4	YDR121W	YPR117W	Q06116	2489 aa		5.13	□□□□□ -1.59
DPB4	YDR121W	DAK2	P43550	591 aa		5.13	□□□□□ -1.59
DPB4	YDR121W	YDL144C	Q07589	356 aa		5.13	□□□□□ -1.59
DPB4	YDR121W	PIN2	Q12057	282 aa		5.13	□□□□□ -1.59
DPB4	YDR121W	GIN4	Q12263	1142 aa		5.13	□□□□□ -1.59
DPB4	YDR121W	ADR1	P07248	1323 aa		5.13	□□□□□ -1.59
DPB4	YDR121W	TAO3	P40468	2376 aa		5.12	□□□□□ -1.59
DPB4	YDR121W	CIT2	P08679	460 aa		5.12	□□□□□ -1.59
DPB4	YDR121W	YBR197C	P38306	217 aa		5.12	□□□□□ -1.59
DPB4	YDR121W	UBP12	P39538	1254 aa		5.12	□□□□□ -1.59
DPB4	YDR121W	RPS26A	P39938	119 aa	Known RBP	5.12	□□□□□ -1.59
DPB4	YDR121W	RPS26B	P39939	119 aa	Known RBP	5.12	□□□□□ -1.59
DPB4	YDR121W	YFH7	P43591	353 aa		5.12	□□□□□ -1.59
DPB4	YDR121W	NAM8	Q00539	523 aa	Known RBP	5.12	□□□□□ -1.59
DPB4	YDR121W	SSF2	Q12153	453 aa	Predicted RBP	5.12	□□□□□ -1.59
DPB4	YDR121W	SUP35	P05453	685 aa	Known RBP	5.11	□□□□□ -1.59
DPB4	YDR121W	CLN2	P20438	545 aa		5.11	□□□□□ -1.59
DPB4	YDR121W	PAH1	P32567	862 aa		5.11	□□□□□ -1.59
DPB4	YDR121W	SLA1	P32790	1244 aa		5.11	□□□□□ -1.59
DPB4	YDR121W	YFL066C	P43538	392 aa		5.11	□□□□□ -1.59
DPB4	YDR121W	UFD2	P54860	961 aa		5.11	□□□□□ -1.59
DPB4	YDR121W	PSF3	Q12146	194 aa		5.11	□□□□□ -1.59
DPB4	YDR121W	SNU66	Q12420	587 aa	Predicted RBP	5.11	□□□□□ -1.59
DPB4	YDR121W	CDC19	P00549	500 aa	Known RBP	5.1	□□□□□ -1.59
DPB4	YDR121W	SPT2	P06843	333 aa	Predicted RBP	5.1	□□□□□ -1.59
DPB4	YDR121W	SWI5	P08153	709 aa		5.1	□□□□□ -1.59
DPB4	YDR121W	SNF3	P10870	884 aa		5.1	□□□□□ -1.59
DPB4	YDR121W	RAD53	P22216	821 aa		5.1	□□□□□ -1.59
DPB4	YDR121W	GCD6	P32501	712 aa	Known RBP	5.1	□□□□□ -1.59
DPB4	YDR121W	RRP14	P36080	434 aa	Known RBP	5.1	□□□□□ -1.59
DPB4	YDR121W	ERG7	P38604	731 aa		5.1	□□□□□ -1.59
DPB4	YDR121W	BOI2	P39969	1040 aa		5.1	□□□□□ -1.59
DPB4	YDR121W	NUG1	P40010	520 aa	Known RBP	5.1	□□□□□ -1.59
DPB4	YDR121W	YIR042C	P40586	236 aa		5.1	□□□□□ -1.59
DPB4	YDR121W	SUT1	P53032	299 aa	Known RBP	5.1	□□□□□ -1.59
DPB4	YDR121W	ALG12	P53730	551 aa		5.1	□□□□□ -1.59
DPB4	YDR121W	NSG2	P53898	299 aa		5.1	□□□□□ -1.59
DPB4	YDR121W	ULP1	Q02724	621 aa		5.1	□□□□□ -1.59
DPB4	YDR121W	BDS1	Q08347	646 aa		5.1	□□□□□ -1.59
DPB4	YDR121W	APC11	Q12157	165 aa		5.1	□□□□□ -1.59
DPB4	YDR121W	KTR2	P33550	425 aa		5.09	□□□□□ -1.59
DPB4	YDR121W	PET112	P33893	541 aa		5.09	□□□□□ -1.59
DPB4	YDR121W	YVH1	Q02256	364 aa	Known RBP	5.09	□□□□□ -1.59
DPB4	YDR121W	RMD1	Q03441	430 aa		5.09	□□□□□ -1.59
DPB4	YDR121W	ESF1	Q06344	628 aa	Known RBP	5.09	□□□□□ -1.59
DPB4	YDR121W	ECM29	P38737	1868 aa		5.09	□□□□□ -1.6
DPB4	YDR121W	PMA1	P05030	918 aa	Known RBP	5.08	□□□□□ -1.6
DPB4	YDR121W	FBP1	P09201	348 aa		5.08	□□□□□ -1.6
DPB4	YDR121W	SUI2	P20459	304 aa	Known RBP	5.08	□□□□□ -1.6
DPB4	YDR121W	ADP1	P25371	1049 aa		5.08	□□□□□ -1.6
DPB4	YDR121W	UTR2	P32623	467 aa		5.08	□□□□□ -1.6
DPB4	YDR121W	PTK1	P36002	662 aa	Predicted RBP	5.08	□□□□□ -1.6
DPB4	YDR121W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	5.08	□□□□□ -1.6	not detected
DPB4	YDR121W	FPR3	P38911	411 aa	Known RBP	5.08	□□□□□ -1.6
DPB4	YDR121W	PSF2	P40359	213 aa		5.08	□□□□□ -1.6
DPB4	YDR121W	OSW7	P43611	510 aa		5.08	□□□□□ -1.6
DPB4	YDR121W	CWC24	P53769	259 aa		5.08	□□□□□ -1.6
DPB4	YDR121W	INM2	Q05533	292 aa		5.08	□□□□□ -1.6
DPB4	YDR121W	CDC53	Q12018	815 aa	Known RBP	5.08	□□□□□ -1.6
DPB4	YDR121W	TUB2	P02557	457 aa	Known RBP	5.07	□□□□□ -1.6
DPB4	YDR121W	TSR4	P25040	408 aa		5.07	□□□□□ -1.6
DPB4	YDR121W	ACA1	P39970	489 aa		5.07	□□□□□ -1.6
DPB4	YDR121W	ATG36	P46983	293 aa		5.07	□□□□□ -1.6
DPB4	YDR121W	CCT8	P47079	568 aa	Known RBP	5.07	□□□□□ -1.6
DPB4	YDR121W	CSI1	Q04368	295 aa		5.07	□□□□□ -1.6
DPB4	YDR121W	CYC8	P14922	966 aa		5.06	□□□□□ -1.6
DPB4	YDR121W	SEC18	P18759	758 aa	Known RBP	5.06	□□□□□ -1.6
DPB4	YDR121W	MDL2	P33311	773 aa		5.06	□□□□□ -1.6
DPB4	YDR121W	NET1	P47035	1189 aa		5.06	□□□□□ -1.6
DPB4	YDR121W	YJL049W	P47048	450 aa		5.06	□□□□□ -1.6
DPB4	YDR121W	VTC4	P47075	721 aa		5.06	□□□□□ -1.6
DPB4	YDR121W	MTO1	P53070	669 aa		5.06	□□□□□ -1.6
DPB4	YDR121W	VPS62	P53285	467 aa		5.06	□□□□□ -1.6
DPB4	YDR121W	RTS3	P53289	263 aa		5.06	□□□□□ -1.6
DPB4	YDR121W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	5.06	□□□□□ -1.6	RIP-Chip

Retrieved 100 of 5,963 RNA–protein pairs in 37.9 ms