RNA–Protein interactions for RNA: YDR120C

TRM1, Transcript of tRNA methyltransferase, yeast

Gene TRM1, Length 1,713 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRM1	YDR120C	RET1	P22276	1149 aa	Known RBP	5.78	□□□□□ -1.48
TRM1	YDR120C	RPL8B	P29453	256 aa	Known RBP	5.78	□□□□□ -1.48
TRM1	YDR120C	NNK1	P36003	928 aa		5.78	□□□□□ -1.48
TRM1	YDR120C	GPT2	P36148	743 aa		5.78	□□□□□ -1.48
TRM1	YDR120C	MCX1	P38323	520 aa	Predicted RBP	5.78	□□□□□ -1.48
TRM1	YDR120C	SNF7	P39929	240 aa	Known RBP	5.78	□□□□□ -1.48
TRM1	YDR120C	MSH4	P40965	878 aa	Predicted RBP	5.78	□□□□□ -1.48
TRM1	YDR120C	PFD1	P46988	109 aa		5.78	□□□□□ -1.48
TRM1	YDR120C	TDA6	Q06466	467 aa		5.78	□□□□□ -1.48
TRM1	YDR120C	FMP25	Q08023	583 aa		5.78	□□□□□ -1.48
TRM1	YDR120C	FLC1	Q08967	793 aa		5.78	□□□□□ -1.48
TRM1	YDR120C	AI3	P03877	415 aa		5.77	□□□□□ -1.49
TRM1	YDR120C	SMY2	P32909	740 aa	Known RBP	5.77	□□□□□ -1.49
TRM1	YDR120C	YPL062W	Q02781	134 aa		5.77	□□□□□ -1.49
TRM1	YDR120C	GNT1	Q12096	491 aa		5.77	□□□□□ -1.49
TRM1	YDR120C	OSH2	Q12451	1283 aa		5.77	□□□□□ -1.49
TRM1	YDR120C	NFS1	P25374	497 aa		5.77	□□□□□ -1.49
TRM1	YDR120C	MBP1	P39678	833 aa		5.77	□□□□□ -1.49
TRM1	YDR120C	YGR125W	P53273	1036 aa		5.77	□□□□□ -1.49
TRM1	YDR120C	YLR257W	Q06146	321 aa	Known RBP	5.77	□□□□□ -1.49
TRM1	YDR120C	YPL260W	Q08977	551 aa		5.77	□□□□□ -1.49
TRM1	YDR120C	KIP1	P28742	1111 aa		5.76	□□□□□ -1.49
TRM1	YDR120C	RSP5	P39940	809 aa	Known RBP	5.76	□□□□□ -1.49
TRM1	YDR120C	SIP5	P40210	489 aa	Known RBP	5.76	□□□□□ -1.49
TRM1	YDR120C	REV3	P14284	1504 aa		5.75	□□□□□ -1.49
TRM1	YDR120C	HSP60	P19882	572 aa	Known RBP	5.75	□□□□□ -1.49
TRM1	YDR120C	RSC6	P25632	483 aa		5.75	□□□□□ -1.49
TRM1	YDR120C	NSG2	P53898	299 aa		5.75	□□□□□ -1.49
TRM1	YDR120C	DOS2	P54858	310 aa		5.75	□□□□□ -1.49
TRM1	YDR120C	PEP1	P32319	1579 aa		5.74	□□□□□ -1.49
TRM1	YDR120C	YER152C	P10356	443 aa		5.74	□□□□□ -1.49
TRM1	YDR120C	PPG1	P32838	368 aa		5.74	□□□□□ -1.49
TRM1	YDR120C	CHZ1	P40019	153 aa	Predicted RBP	5.74	□□□□□ -1.49
TRM1	YDR120C	ALT1	P52893	592 aa		5.74	□□□□□ -1.49
TRM1	YDR120C	ERP6	P53198	216 aa		5.74	□□□□□ -1.49
TRM1	YDR120C	UTP8	P53276	713 aa	Known RBP	5.74	□□□□□ -1.49
TRM1	YDR120C	EAF1	Q06337	982 aa		5.74	□□□□□ -1.49
TRM1	YDR120C	SPO21	Q12411	609 aa		5.74	□□□□□ -1.49
TRM1	YDR120C	CIT1	P00890	479 aa		5.74	□□□□□ -1.49
TRM1	YDR120C	MDJ1	P35191	511 aa		5.74	□□□□□ -1.49
TRM1	YDR120C	BRN1	P38170	754 aa		5.74	□□□□□ -1.49
TRM1	YDR120C	PRY1	P47032	299 aa		5.74	□□□□□ -1.49
TRM1	YDR120C	ALG12	P53730	551 aa		5.74	□□□□□ -1.49
TRM1	YDR120C	HRK1	Q08732	759 aa	Known RBP	5.74	□□□□□ -1.49
TRM1	YDR120C	RPS4A	P0CX35	261 aa	Known RBP	5.73	□□□□□ -1.49
TRM1	YDR120C	RPS4B	P0CX36	261 aa	Known RBP	5.73	□□□□□ -1.49
TRM1	YDR120C	PRP9	P19736	530 aa	Known RBP	5.73	□□□□□ -1.49
TRM1	YDR120C	RRP14	P36080	434 aa	Known RBP	5.73	□□□□□ -1.49
TRM1	YDR120C	SPC42	P36094	363 aa		5.73	□□□□□ -1.49
TRM1	YDR120C	NMD3	P38861	518 aa	Known RBP	5.73	□□□□□ -1.49
TRM1	YDR120C	NUP82	P40368	713 aa		5.73	□□□□□ -1.49
TRM1	YDR120C	YJL045W	P47052	634 aa		5.73	□□□□□ -1.49
TRM1	YDR120C	ARI1	P53111	347 aa	Known RBP	5.73	□□□□□ -1.49
TRM1	YDR120C	SPP382	Q06411	708 aa	Predicted RBP	5.73	□□□□□ -1.49
TRM1	YDR120C	YDR215C	Q12240	137 aa		5.73	□□□□□ -1.49
TRM1	YDR120C	ARE1	P25628	610 aa		5.72	□□□□□ -1.49
TRM1	YDR120C	TIM23	P32897	222 aa		5.72	□□□□□ -1.49
TRM1	YDR120C	PNT1	P38969	423 aa		5.72	□□□□□ -1.49
TRM1	YDR120C	GPB2	P39717	880 aa		5.72	□□□□□ -1.49
TRM1	YDR120C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	5.72	□□□□□ -1.49	not detected
TRM1	YDR120C	PUS7	Q08647	676 aa	Known RBP	5.72	□□□□□ -1.49
TRM1	YDR120C	RPL11A	P0C0W9	174 aa	Known RBP	5.71	□□□□□ -1.49
TRM1	YDR120C	GAL11	P19659	1081 aa		5.71	□□□□□ -1.49
TRM1	YDR120C	YCK2	P23292	546 aa	Known RBP	5.71	□□□□□ -1.49
TRM1	YDR120C	GGA2	P38817	585 aa	Known RBP	5.71	□□□□□ -1.49
TRM1	YDR120C	ALR2	P43553	858 aa		5.71	□□□□□ -1.49
TRM1	YDR120C	TPP1	Q03796	238 aa		5.71	□□□□□ -1.49
TRM1	YDR120C	GIC2	Q06648	383 aa		5.71	□□□□□ -1.49
TRM1	YDR120C	UBX5	Q06682	500 aa		5.71	□□□□□ -1.49
TRM1	YDR120C	RPL11B	Q3E757	174 aa	Predicted RBP	5.71	□□□□□ -1.49
TRM1	YDR120C	BPT1	P14772	1559 aa		5.71	□□□□□ -1.5
TRM1	YDR120C	CAN1	P04817	590 aa		5.71	□□□□□ -1.5
TRM1	YDR120C	DBP2	P24783	546 aa	Known RBP	5.71	□□□□□ -1.5
TRM1	YDR120C	SLN1	P39928	1220 aa	Predicted RBP	5.71	□□□□□ -1.5
TRM1	YDR120C	RPN3	P40016	523 aa	Known RBP	5.71	□□□□□ -1.5
TRM1	YDR120C	EAR1	Q03212	550 aa		5.71	□□□□□ -1.5
TRM1	YDR120C	TAF8	Q03750	510 aa		5.71	□□□□□ -1.5
TRM1	YDR120C	ATG2	P53855	1592 aa		5.7	□□□□□ -1.5
TRM1	YDR120C	YMR187C	Q03236	431 aa		5.7	□□□□□ -1.5
TRM1	YDR120C	HBS1	P32769	611 aa	Known RBP	5.69	□□□□□ -1.5
TRM1	YDR120C	YSC84	P32793	468 aa		5.69	□□□□□ -1.5
TRM1	YDR120C	MXR1	P40029	184 aa		5.69	□□□□□ -1.5
TRM1	YDR120C	HUL4	P40985	892 aa		5.69	□□□□□ -1.5
TRM1	YDR120C	ERR1	P0CX10	437 aa		5.68	□□□□□ -1.5
TRM1	YDR120C	ERR2	P0CX11	437 aa		5.68	□□□□□ -1.5
TRM1	YDR120C	PHO8	P11491	566 aa		5.68	□□□□□ -1.5
TRM1	YDR120C	NAM7	P30771	971 aa	Known RBP	5.68	□□□□□ -1.5
TRM1	YDR120C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	5.68	□□□□□ -1.5	not detected
TRM1	YDR120C	HOS3	Q02959	697 aa	Known RBP	5.68	□□□□□ -1.5
TRM1	YDR120C	YLR125W	Q12138	136 aa		5.68	□□□□□ -1.5
TRM1	YDR120C	YPR053C	Q6Q5F3	151 aa		5.68	□□□□□ -1.5
TRM1	YDR120C	MET6	P05694	767 aa	Known RBP	5.68	□□□□□ -1.5
TRM1	YDR120C	AKR1	P39010	764 aa		5.68	□□□□□ -1.5
TRM1	YDR120C	RTA1	P53047	317 aa		5.68	□□□□□ -1.5
TRM1	YDR120C	MMM1	P41800	426 aa		5.67	□□□□□ -1.5
TRM1	YDR120C	TNA1	P53322	534 aa		5.67	□□□□□ -1.5
TRM1	YDR120C	YDR306C	Q06640	478 aa		5.67	□□□□□ -1.5
TRM1	YDR120C	ACM1	Q08981	209 aa		5.67	□□□□□ -1.5
TRM1	YDR120C	PHM7	Q12252	991 aa		5.67	□□□□□ -1.5
TRM1	YDR120C	YVC1	Q12324	675 aa		5.67	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 10.9 ms