RNA–Protein interactions for RNA: YDL108W

KIN28, Transcript of Serine/threonine protein kinase, subunit of transcription factor TFIIH, yeast

Gene KIN28, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
KIN28	YDL108W	TIF35	Q04067	274 aa	Known RBP	5.75	□□□□□ -1.49
KIN28	YDL108W	RSA3	Q05942	220 aa	Known RBP	5.75	□□□□□ -1.49
KIN28	YDL108W	ABD1	P32783	436 aa	Predicted RBP	5.74	□□□□□ -1.49
KIN28	YDL108W	AKR1	P39010	764 aa		5.74	□□□□□ -1.49
KIN28	YDL108W	SNF7	P39929	240 aa	Known RBP	5.74	□□□□□ -1.49
KIN28	YDL108W	HNT2	P49775	206 aa		5.74	□□□□□ -1.49
KIN28	YDL108W	YLR225C	Q05948	407 aa	Known RBP	5.74	□□□□□ -1.49
KIN28	YDL108W	YLR257W	Q06146	321 aa	Known RBP	5.74	□□□□□ -1.49
KIN28	YDL108W	YOL098C	Q12496	1037 aa		5.74	□□□□□ -1.49
KIN28	YDL108W	GAL11	P19659	1081 aa		5.73	□□□□□ -1.49
KIN28	YDL108W	RET1	P22276	1149 aa	Known RBP	5.73	□□□□□ -1.49
KIN28	YDL108W	GRX1	P25373	110 aa	Known RBP	5.73	□□□□□ -1.49
KIN28	YDL108W	YKL107W	P34251	309 aa		5.73	□□□□□ -1.49
KIN28	YDL108W	RGD1	P38339	666 aa		5.73	□□□□□ -1.49
KIN28	YDL108W	QNS1	P38795	714 aa	Known RBP	5.73	□□□□□ -1.49
KIN28	YDL108W	SPF1	P39986	1215 aa	Known RBP	5.73	□□□□□ -1.49
KIN28	YDL108W	NAN1	Q02931	896 aa	Known RBP	5.73	□□□□□ -1.49
KIN28	YDL108W	YPL034W	Q03083	165 aa		5.73	□□□□□ -1.49
KIN28	YDL108W	ESC2	Q06340	456 aa		5.73	□□□□□ -1.49
KIN28	YDL108W	GIC2	Q06648	383 aa		5.73	□□□□□ -1.49
KIN28	YDL108W	HRK1	Q08732	759 aa	Known RBP	5.73	□□□□□ -1.49
KIN28	YDL108W	RKM4	Q12504	494 aa		5.73	□□□□□ -1.49
KIN28	YDL108W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	5.72	□□□□□ -1.49	not detected
KIN28	YDL108W	AGP1	P25376	633 aa		5.72	□□□□□ -1.49
KIN28	YDL108W	SBA1	P28707	216 aa	Known RBP	5.72	□□□□□ -1.49
KIN28	YDL108W	MLS1	P30952	554 aa		5.72	□□□□□ -1.49
KIN28	YDL108W	RPS0A	P32905	252 aa	Known RBP	5.72	□□□□□ -1.49
KIN28	YDL108W	SEA4	P38164	1038 aa		5.72	□□□□□ -1.49
KIN28	YDL108W	ALO1	P54783	526 aa	Known RBP	5.72	□□□□□ -1.49
KIN28	YDL108W	RPS4A	P0CX35	261 aa	Known RBP	5.71	□□□□□ -1.5
KIN28	YDL108W	RPS4B	P0CX36	261 aa	Known RBP	5.71	□□□□□ -1.5
KIN28	YDL108W	TSR4	P25040	408 aa		5.71	□□□□□ -1.5
KIN28	YDL108W	COQ2	P32378	372 aa		5.71	□□□□□ -1.5
KIN28	YDL108W	SRP40	P32583	406 aa	Predicted RBP	5.71	□□□□□ -1.5
KIN28	YDL108W	RRP14	P36080	434 aa	Known RBP	5.71	□□□□□ -1.5
KIN28	YDL108W	TPP1	Q03796	238 aa		5.71	□□□□□ -1.5
KIN28	YDL108W	YPL260W	Q08977	551 aa		5.71	□□□□□ -1.5
KIN28	YDL108W	KIP1	P28742	1111 aa		5.7	□□□□□ -1.5
KIN28	YDL108W	NAM7	P30771	971 aa	Known RBP	5.7	□□□□□ -1.5
KIN28	YDL108W	MRP8	P35719	219 aa		5.7	□□□□□ -1.5
KIN28	YDL108W	NMD3	P38861	518 aa	Known RBP	5.7	□□□□□ -1.5
KIN28	YDL108W	MPH1	P40562	993 aa		5.7	□□□□□ -1.5
KIN28	YDL108W	YGL176C	P46945	554 aa		5.7	□□□□□ -1.5
KIN28	YDL108W	ALT1	P52893	592 aa		5.7	□□□□□ -1.5
KIN28	YDL108W	SHE9	Q04172	456 aa		5.7	□□□□□ -1.5
KIN28	YDL108W	BRE1	Q07457	700 aa	Known RBP	5.7	□□□□□ -1.5
KIN28	YDL108W	RLP24	Q07915	199 aa	Known RBP	5.7	□□□□□ -1.5
KIN28	YDL108W	CDC53	Q12018	815 aa	Known RBP	5.7	□□□□□ -1.5
KIN28	YDL108W	SPO21	Q12411	609 aa		5.7	□□□□□ -1.5
KIN28	YDL108W	RAD4	P14736	754 aa		5.69	□□□□□ -1.5
KIN28	YDL108W	RPA135	P22138	1203 aa	Known RBP	5.69	□□□□□ -1.5
KIN28	YDL108W	PPG1	P32838	368 aa		5.69	□□□□□ -1.5
KIN28	YDL108W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	5.69	□□□□□ -1.5	not detected
KIN28	YDL108W	VBA5	P36172	582 aa		5.69	□□□□□ -1.5
KIN28	YDL108W	ERP2	P39704	215 aa		5.69	□□□□□ -1.5
KIN28	YDL108W	MMM1	P41800	426 aa		5.69	□□□□□ -1.5
KIN28	YDL108W	TIM54	P47045	478 aa		5.69	□□□□□ -1.5
KIN28	YDL108W	YJL045W	P47052	634 aa		5.69	□□□□□ -1.5
KIN28	YDL108W	NSE3	Q05541	303 aa		5.69	□□□□□ -1.5
KIN28	YDL108W	PUS7	Q08647	676 aa	Known RBP	5.69	□□□□□ -1.5
KIN28	YDL108W	GNT1	Q12096	491 aa		5.69	□□□□□ -1.5
KIN28	YDL108W	YKL091C	P33324	310 aa	Known RBP	5.68	□□□□□ -1.5
KIN28	YDL108W	PMC1	P38929	1173 aa	Predicted RBP	5.68	□□□□□ -1.5
KIN28	YDL108W	GPB2	P39717	880 aa		5.68	□□□□□ -1.5
KIN28	YDL108W	RNH70	P53331	553 aa		5.68	□□□□□ -1.5
KIN28	YDL108W	SPP382	Q06411	708 aa	Predicted RBP	5.68	□□□□□ -1.5
KIN28	YDL108W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	5.68	□□□□□ -1.5	not detected
KIN28	YDL108W	YPL066W	Q12194	479 aa		5.68	□□□□□ -1.5
KIN28	YDL108W	YOR131C	Q12486	218 aa		5.68	□□□□□ -1.5
KIN28	YDL108W	STI1	P15705	589 aa	Known RBP RIP-Chip data	5.67	□□□□□ -1.5	not detected
KIN28	YDL108W	WHI3	P34761	661 aa	Known RBP	5.67	□□□□□ -1.5
KIN28	YDL108W	YBR184W	P38299	523 aa		5.67	□□□□□ -1.5
KIN28	YDL108W	SAF1	P38352	637 aa		5.67	□□□□□ -1.5
KIN28	YDL108W	IOC3	P43596	787 aa		5.67	□□□□□ -1.5
KIN28	YDL108W	CIT3	P43635	486 aa		5.67	□□□□□ -1.5
KIN28	YDL108W	YER152C	P10356	443 aa		5.66	□□□□□ -1.5
KIN28	YDL108W	MPE1	P35728	441 aa	Known RBP	5.66	□□□□□ -1.5
KIN28	YDL108W	TAT2	P38967	592 aa		5.66	□□□□□ -1.5
KIN28	YDL108W	TPM2	P40414	161 aa		5.66	□□□□□ -1.5
KIN28	YDL108W	IRR1	P40541	1150 aa		5.66	□□□□□ -1.5
KIN28	YDL108W	INP52	P50942	1183 aa		5.66	□□□□□ -1.5
KIN28	YDL108W	EAR1	Q03212	550 aa		5.66	□□□□□ -1.5
KIN28	YDL108W	GIR2	Q03768	265 aa	Predicted RBP	5.66	□□□□□ -1.5
KIN28	YDL108W	ECM16	Q04217	1267 aa	Known RBP	5.66	□□□□□ -1.5
KIN28	YDL108W	BDF2	Q07442	638 aa		5.66	□□□□□ -1.5
KIN28	YDL108W	SPO75	Q07798	868 aa		5.66	□□□□□ -1.5
KIN28	YDL108W	OSH2	Q12451	1283 aa		5.66	□□□□□ -1.5
KIN28	YDL108W	CHS2	P14180	963 aa		5.65	□□□□□ -1.5
KIN28	YDL108W	OMA1	P36163	345 aa		5.65	□□□□□ -1.5
KIN28	YDL108W	PBY1	P38254	753 aa		5.65	□□□□□ -1.5
KIN28	YDL108W	NOC2	P39744	710 aa	Known RBP	5.65	□□□□□ -1.5
KIN28	YDL108W	HUL5	P53119	910 aa		5.65	□□□□□ -1.5
KIN28	YDL108W	YDL121C	Q07541	149 aa		5.65	□□□□□ -1.5
KIN28	YDL108W	YOR059C	Q08448	450 aa	Known RBP	5.65	□□□□□ -1.5
KIN28	YDL108W	COQ4	O13525	335 aa		5.64	□□□□□ -1.51
KIN28	YDL108W	PRP9	P19736	530 aa	Known RBP	5.64	□□□□□ -1.51
KIN28	YDL108W	YSC84	P32793	468 aa		5.64	□□□□□ -1.51
KIN28	YDL108W	STE5	P32917	917 aa		5.64	□□□□□ -1.51
KIN28	YDL108W	PGM1	P33401	570 aa	Known RBP	5.64	□□□□□ -1.51
KIN28	YDL108W	MBP1	P39678	833 aa		5.64	□□□□□ -1.51

Retrieved 100 of 5,963 RNA–protein pairs in 8.6 ms