RNA–Protein interactions for RNA: ENST00000621016.4

CDH1-214, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 3,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-214ENST00000621016 ZFYVE9O95405 1425 aa13.03□□□□□ -0.32
CDH1-214ENST00000621016 ARHGAP31Q2M1Z3 1444 aa13.03□□□□□ -0.32
CDH1-214ENST00000621016 CAVIN1Q6NZI2 390 aaKnown RBP13.03□□□□□ -0.32
CDH1-214ENST00000621016 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.03□□□□□ -0.32
CDH1-214ENST00000621016 KIF20AO95235 890 aa13.03□□□□□ -0.32
CDH1-214ENST00000621016 ANXA1P04083 346 aa13.03□□□□□ -0.32
CDH1-214ENST00000621016 MAP3K19Q56UN5 1328 aa13.03□□□□□ -0.32
CDH1-214ENST00000621016 NEK4P51957 841 aa13.03□□□□□ -0.32
CDH1-214ENST00000621016 INTS3Q68E01 1043 aaKnown RBP13.03□□□□□ -0.32
CDH1-214ENST00000621016 TRIM34Q9BYJ4 488 aa13.03□□□□□ -0.32
CDH1-214ENST00000621016 ZMYM3Q14202 1370 aa13.02□□□□□ -0.32
CDH1-214ENST00000621016 PRR29P0C7W0 189 aa13.02□□□□□ -0.32
CDH1-214ENST00000621016 ANKRD44Q8N8A2 993 aa13.02□□□□□ -0.32
CDH1-214ENST00000621016 ANO2Q9NQ90 1003 aa13.02□□□□□ -0.32
CDH1-214ENST00000621016 ROBO2Q9HCK4 1378 aa13.02□□□□□ -0.32
CDH1-214ENST00000621016 CPS1P31327 1500 aa13.02□□□□□ -0.33
CDH1-214ENST00000621016 ADGRB2O60241 1585 aa13.02□□□□□ -0.33
CDH1-214ENST00000621016 CHL1O00533 1208 aa13.02□□□□□ -0.33
CDH1-214ENST00000621016 PRPF40AO75400 957 aaKnown RBP13.02□□□□□ -0.33
CDH1-214ENST00000621016 UPF3BQ9BZI7 483 aaKnown RBP13.02□□□□□ -0.33
CDH1-214ENST00000621016 HDAC5Q9UQL6 1122 aa13.02□□□□□ -0.33
CDH1-214ENST00000621016 AMOTL2Q9Y2J4 779 aa13.02□□□□□ -0.33
CDH1-214ENST00000621016 EDC4Q6P2E9 1401 aaKnown RBP13.02□□□□□ -0.33
CDH1-214ENST00000621016 SNX21Q969T3 373 aa13.01□□□□□ -0.33
CDH1-214ENST00000621016 RAB3GAP1Q15042 981 aa13.01□□□□□ -0.33
CDH1-214ENST00000621016 A2ML1A8K2U0 1454 aa13.01□□□□□ -0.33
CDH1-214ENST00000621016 LETM1O95202 739 aaPredicted RBP13.01□□□□□ -0.33
CDH1-214ENST00000621016 EYA1Q99502 592 aa13.01□□□□□ -0.33
CDH1-214ENST00000621016 USP26Q9BXU7 913 aa13□□□□□ -0.33
CDH1-214ENST00000621016 RBM27Q9P2N5 1060 aaKnown RBP13□□□□□ -0.33
CDH1-214ENST00000621016 NASPP49321 788 aaPredicted RBP13□□□□□ -0.33
CDH1-214ENST00000621016 NUTM1Q86Y26 1132 aa13□□□□□ -0.33
CDH1-214ENST00000621016 TMEM131LA2VDJ0 1609 aa13□□□□□ -0.33
CDH1-214ENST00000621016 PNMA6EA0A0J9YXQ4 647 aa13□□□□□ -0.33
CDH1-214ENST00000621016 BAG4O95429 457 aaKnown RBP13□□□□□ -0.33
CDH1-214ENST00000621016 ABTB2Q8N961 1025 aa13□□□□□ -0.33
CDH1-214ENST00000621016 TMX1Q9H3N1 280 aa13□□□□□ -0.33
CDH1-214ENST00000621016 ERICH4A6NGS2 130 aa12.99□□□□□ -0.33
CDH1-214ENST00000621016 HMMRO75330 724 aa12.99□□□□□ -0.33
CDH1-214ENST00000621016 RPAP2Q8IXW5 612 aaPredicted RBP12.99□□□□□ -0.33
CDH1-214ENST00000621016 MAP2P11137 1827 aaKnown RBP12.99□□□□□ -0.33
CDH1-214ENST00000621016 LRRFIP2Q9Y608 721 aaKnown RBP12.99□□□□□ -0.33
CDH1-214ENST00000621016 ST18O60284 1047 aa12.98□□□□□ -0.33
CDH1-214ENST00000621016 GTPBP4Q9BZE4 634 aaKnown RBP12.98□□□□□ -0.33
CDH1-214ENST00000621016 RNF214Q8ND24 703 aa12.98□□□□□ -0.33
CDH1-214ENST00000621016 EID1Q9Y6B2 187 aa12.98□□□□□ -0.33
CDH1-214ENST00000621016 BRPF1P55201 1214 aaPredicted RBP12.98□□□□□ -0.33
CDH1-214ENST00000621016 RABEP1Q15276 862 aa12.98□□□□□ -0.33
CDH1-214ENST00000621016 DDX54Q8TDD1 881 aaKnown RBP12.98□□□□□ -0.33
CDH1-214ENST00000621016 PHAXQ9H814 394 aaKnown RBP12.98□□□□□ -0.33
CDH1-214ENST00000621016 GNAI2P04899 355 aa12.97□□□□□ -0.33
CDH1-214ENST00000621016 FLIIQ13045 1269 aa12.97□□□□□ -0.33
CDH1-214ENST00000621016 ZNF526Q8TF50 670 aaPredicted RBP12.97□□□□□ -0.33
CDH1-214ENST00000621016 GDPD2Q9HCC8 539 aa12.97□□□□□ -0.33
CDH1-214ENST00000621016 RNF216Q9NWF9 866 aaPredicted RBP12.97□□□□□ -0.33
CDH1-214ENST00000621016 TULP1O00294 542 aaPredicted RBP12.97□□□□□ -0.33
CDH1-214ENST00000621016 DYNC1I1O14576 645 aa12.97□□□□□ -0.33
CDH1-214ENST00000621016 PDE1AP54750 535 aa12.97□□□□□ -0.33
CDH1-214ENST00000621016 TMED8Q6PL24 325 aaPredicted RBP12.97□□□□□ -0.33
CDH1-214ENST00000621016 RTL1A6NKG5 1358 aa12.97□□□□□ -0.33
CDH1-214ENST00000621016 USP32Q8NFA0 1604 aa12.97□□□□□ -0.33
CDH1-214ENST00000621016 CFAP74Q9C0B2 1584 aa12.97□□□□□ -0.33
CDH1-214ENST00000621016 CPSF1Q10570 1443 aaKnown RBP12.96□□□□□ -0.33
CDH1-214ENST00000621016 PTCH1Q13635 1447 aa12.96□□□□□ -0.33
CDH1-214ENST00000621016 ERC2O15083 957 aa12.96□□□□□ -0.34
CDH1-214ENST00000621016 SURF6O75683 361 aaKnown RBP12.96□□□□□ -0.34
CDH1-214ENST00000621016 REC8O95072 547 aa12.96□□□□□ -0.34
CDH1-214ENST00000621016 U2AF2P26368 475 aaKnown RBP eCLIP12.96□□□□□ -0.34
CDH1-214ENST00000621016 OS9Q13438 667 aaPredicted RBP12.96□□□□□ -0.34
CDH1-214ENST00000621016 PREX1Q8TCU6 1659 aa12.96□□□□□ -0.34
CDH1-214ENST00000621016 MTERF4Q7Z6M4 381 aaKnown RBP12.95□□□□□ -0.34
CDH1-214ENST00000621016 UNC5CLQ8IV45 518 aa12.95□□□□□ -0.34
CDH1-214ENST00000621016 DDIT3P35638 169 aa12.95□□□□□ -0.34
CDH1-214ENST00000621016 PALD1Q9ULE6 856 aa12.95□□□□□ -0.34
CDH1-214ENST00000621016 AK9Q5TCS8 1911 aa12.95□□□□□ -0.34
CDH1-214ENST00000621016 HDGFL1Q5TGJ6 251 aa12.95□□□□□ -0.34
CDH1-214ENST00000621016 LRRCC1Q9C099 1032 aa12.95□□□□□ -0.34
CDH1-214ENST00000621016 CIZ1Q9ULV3 898 aaPredicted RBP12.95□□□□□ -0.34
CDH1-214ENST00000621016 MED14O60244 1454 aa12.94□□□□□ -0.34
CDH1-214ENST00000621016 ATP7BP35670 1465 aa12.94□□□□□ -0.34
CDH1-214ENST00000621016 CHRM1P11229 460 aaPredicted RBP12.94□□□□□ -0.34
CDH1-214ENST00000621016 TNRQ92752 1358 aa12.94□□□□□ -0.34
CDH1-214ENST00000621016 UBTFL1P0CB47 393 aaPredicted RBP12.93□□□□□ -0.34
CDH1-214ENST00000621016 MX1P20591 662 aa12.93□□□□□ -0.34
CDH1-214ENST00000621016 VIRMAQ69YN4 1812 aaKnown RBP12.93□□□□□ -0.34
CDH1-214ENST00000621016 PIK3R4Q99570 1358 aa12.93□□□□□ -0.34
CDH1-214ENST00000621016 LOC102724159A0A0B4J2E5 919 aa12.93□□□□□ -0.34
CDH1-214ENST00000621016 GNAT3A8MTJ3 354 aa12.93□□□□□ -0.34
CDH1-214ENST00000621016 PWP2Q15269 919 aaKnown RBP12.93□□□□□ -0.34
CDH1-214ENST00000621016 SKOR2Q2VWA4 1001 aaPredicted RBP12.93□□□□□ -0.34
CDH1-214ENST00000621016 CCT4P50991 539 aaKnown RBP12.92□□□□□ -0.34
CDH1-214ENST00000621016 CCDC30Q5VVM6 783 aa12.92□□□□□ -0.34
CDH1-214ENST00000621016 IL17REQ8NFR9 667 aa12.92□□□□□ -0.34
CDH1-214ENST00000621016 PTPRCP08575 1304 aa12.92□□□□□ -0.34
CDH1-214ENST00000621016 KCNQ3O43525 872 aa12.92□□□□□ -0.34
CDH1-214ENST00000621016 CCDC173Q0VFZ6 552 aa12.92□□□□□ -0.34
CDH1-214ENST00000621016 AATKQ6ZMQ8 1374 aa12.92□□□□□ -0.34
CDH1-214ENST00000621016 SYCE3A1L190 88 aa12.91□□□□□ -0.34
CDH1-214ENST00000621016 TNNT3P45378 269 aaPredicted RBP12.91□□□□□ -0.34
CDH1-214ENST00000621016 MPRIPQ6WCQ1 1025 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms