RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-223ENST00000611659 KIF3AQ9Y496 699 aa14.43□□□□□ -0.1
TPM3-223ENST00000611659 ARHGEF40Q8TER5 1519 aa14.43□□□□□ -0.1
TPM3-223ENST00000611659 ANKRD26Q9UPS8 1709 aa14.42□□□□□ -0.1
TPM3-223ENST00000611659 OSCARQ8IYS5 282 aa14.42□□□□□ -0.1
TPM3-223ENST00000611659 COG3Q96JB2 828 aa14.42□□□□□ -0.1
TPM3-223ENST00000611659 CDC42BPGQ6DT37 1551 aa14.42□□□□□ -0.1
TPM3-223ENST00000611659 SRCIN1Q9C0H9 1055 aa14.42□□□□□ -0.1
TPM3-223ENST00000611659 RGS12O14924 1447 aa14.42□□□□□ -0.1
TPM3-223ENST00000611659 DTNBO60941 627 aa14.41□□□□□ -0.1
TPM3-223ENST00000611659 MX1P20591 662 aa14.41□□□□□ -0.1
TPM3-223ENST00000611659 CCDC183Q5T5S1 534 aa14.41□□□□□ -0.1
TPM3-223ENST00000611659 YEATS2Q9ULM3 1422 aa14.41□□□□□ -0.1
TPM3-223ENST00000611659 FIBPO43427 364 aa14.41□□□□□ -0.1
TPM3-223ENST00000611659 CHMLP26374 656 aa14.41□□□□□ -0.1
TPM3-223ENST00000611659 G2E3Q7L622 706 aa14.41□□□□□ -0.1
TPM3-223ENST00000611659 LRRCC1Q9C099 1032 aa14.41□□□□□ -0.1
TPM3-223ENST00000611659 OSBPL3Q9H4L5 887 aa14.41□□□□□ -0.1
TPM3-223ENST00000611659 POGZQ7Z3K3 1410 aa14.41□□□□□ -0.1
TPM3-223ENST00000611659 PTPRCP08575 1304 aa14.41□□□□□ -0.1
TPM3-223ENST00000611659 UVSSAQ2YD98 709 aa14.41□□□□□ -0.1
TPM3-223ENST00000611659 NCKAP5LQ9HCH0 1330 aa14.4□□□□□ -0.1
TPM3-223ENST00000611659 SPC24Q8NBT2 197 aa14.4□□□□□ -0.1
TPM3-223ENST00000611659 PODXL2Q9NZ53 605 aa14.4□□□□□ -0.1
TPM3-223ENST00000611659 SPDYE4A6NLX3 237 aa14.4□□□□□ -0.1
TPM3-223ENST00000611659 SLC52A1Q9NWF4 448 aa14.4□□□□□ -0.1
TPM3-223ENST00000611659 MAP4K4O95819 1239 aaPredicted RBP14.39□□□□□ -0.11
TPM3-223ENST00000611659 ZSCAN20P17040 1043 aaPredicted RBP14.39□□□□□ -0.11
TPM3-223ENST00000611659 DMTNQ08495 405 aa14.39□□□□□ -0.11
TPM3-223ENST00000611659 GIMAP6Q6P9H5 292 aa14.39□□□□□ -0.11
TPM3-223ENST00000611659 UNC5CLQ8IV45 518 aa14.39□□□□□ -0.11
TPM3-223ENST00000611659 GNAI2P04899 355 aa14.39□□□□□ -0.11
TPM3-223ENST00000611659 ANAPC15P60006 121 aa14.39□□□□□ -0.11
TPM3-223ENST00000611659 CHL1O00533 1208 aa14.39□□□□□ -0.11
TPM3-223ENST00000611659 SOX12O15370 315 aa14.39□□□□□ -0.11
TPM3-223ENST00000611659 FRMPD1Q5SYB0 1578 aa14.38□□□□□ -0.11
TPM3-223ENST00000611659 HECW2Q9P2P5 1572 aa14.38□□□□□ -0.11
TPM3-223ENST00000611659 A0A0U1RQG5 324 aaPredicted RBP14.38□□□□□ -0.11
TPM3-223ENST00000611659 NUTM2FA1L443 756 aa14.38□□□□□ -0.11
TPM3-223ENST00000611659 BCL2L12Q9HB09 334 aa14.38□□□□□ -0.11
TPM3-223ENST00000611659 MAP2P11137 1827 aaKnown RBP14.38□□□□□ -0.11
TPM3-223ENST00000611659 KDM4AO75164 1064 aa14.38□□□□□ -0.11
TPM3-223ENST00000611659 CHAF1AQ13111 956 aaPredicted RBP14.38□□□□□ -0.11
TPM3-223ENST00000611659 ATP2B3Q16720 1220 aa14.38□□□□□ -0.11
TPM3-223ENST00000611659 NECTIN2Q92692 538 aa14.38□□□□□ -0.11
TPM3-223ENST00000611659 SIGLEC1Q9BZZ2 1709 aa14.38□□□□□ -0.11
TPM3-223ENST00000611659 KIF20BQ96Q89 1820 aa14.37□□□□□ -0.11
TPM3-223ENST00000611659 FKBP5Q13451 457 aaPredicted RBP14.37□□□□□ -0.11
TPM3-223ENST00000611659 IL1RAPL2Q9NP60 686 aa14.37□□□□□ -0.11
TPM3-223ENST00000611659 PNMA6EA0A0J9YXQ4 647 aa14.37□□□□□ -0.11
TPM3-223ENST00000611659 IL25Q9H293 177 aa14.37□□□□□ -0.11
TPM3-223ENST00000611659 CCT4P50991 539 aaKnown RBP14.37□□□□□ -0.11
TPM3-223ENST00000611659 CYB5RLQ6IPT4 315 aa14.37□□□□□ -0.11
TPM3-223ENST00000611659 PDCL2Q8N4E4 241 aa14.37□□□□□ -0.11
TPM3-223ENST00000611659 ZSCAN22P10073 491 aaPredicted RBP14.36□□□□□ -0.11
TPM3-223ENST00000611659 UBE2HP62256 183 aa14.36□□□□□ -0.11
TPM3-223ENST00000611659 CPSF1Q10570 1443 aaKnown RBP14.36□□□□□ -0.11
TPM3-223ENST00000611659 CHMP3Q9Y3E7 222 aa14.36□□□□□ -0.11
TPM3-223ENST00000611659 LETM1O95202 739 aaPredicted RBP14.35□□□□□ -0.11
TPM3-223ENST00000611659 GTF2F1P35269 517 aaKnown RBP eCLIP14.35□□□□□ -0.11
TPM3-223ENST00000611659 TSPYL4Q9UJ04 414 aa14.35□□□□□ -0.11
TPM3-223ENST00000611659 PYCARDQ9ULZ3 195 aa14.35□□□□□ -0.11
TPM3-223ENST00000611659 STX6O43752 255 aa14.35□□□□□ -0.11
TPM3-223ENST00000611659 NUTM1Q86Y26 1132 aa14.35□□□□□ -0.11
TPM3-223ENST00000611659 PIK3C2BO00750 1634 aa14.35□□□□□ -0.11
TPM3-223ENST00000611659 CDK12Q9NYV4 1490 aaPredicted RBP14.35□□□□□ -0.11
TPM3-223ENST00000611659 RIOK3O14730 519 aaKnown RBP14.35□□□□□ -0.11
TPM3-223ENST00000611659 IGSF3O75054 1194 aa14.35□□□□□ -0.11
TPM3-223ENST00000611659 SYT1P21579 422 aa14.35□□□□□ -0.11
TPM3-223ENST00000611659 EIF4A2Q14240 407 aaKnown RBP14.35□□□□□ -0.11
TPM3-223ENST00000611659 SMC3Q9UQE7 1217 aa14.35□□□□□ -0.11
TPM3-223ENST00000611659 RPAP1Q9BWH6 1393 aaPredicted RBP14.34□□□□□ -0.11
TPM3-223ENST00000611659 UTP14CQ5TAP6 766 aaKnown RBP14.34□□□□□ -0.11
TPM3-223ENST00000611659 SPTLC3Q9NUV7 552 aa14.34□□□□□ -0.11
TPM3-223ENST00000611659 DLG5Q8TDM6 1919 aa14.34□□□□□ -0.11
TPM3-223ENST00000611659 DIAPH3Q9NSV4 1193 aa14.34□□□□□ -0.11
TPM3-223ENST00000611659 AP5Z1O43299 807 aa14.33□□□□□ -0.11
TPM3-223ENST00000611659 CPA1P15085 419 aa14.33□□□□□ -0.11
TPM3-223ENST00000611659 U2AF2P26368 475 aaKnown RBP eCLIP14.33□□□□□ -0.115e-7■■■■□ 22.9
TPM3-223ENST00000611659 STK31Q9BXU1 1019 aa14.33□□□□□ -0.11
TPM3-223ENST00000611659 SALL3Q9BXA9 1300 aa14.33□□□□□ -0.12
TPM3-223ENST00000611659 FOXO3O43524 673 aa14.33□□□□□ -0.12
TPM3-223ENST00000611659 AK2P54819 239 aa14.33□□□□□ -0.12
TPM3-223ENST00000611659 HSPA4P34932 840 aa14.32□□□□□ -0.12
TPM3-223ENST00000611659 DNM1Q05193 864 aaKnown RBP14.32□□□□□ -0.12
TPM3-223ENST00000611659 PLPPR3Q6T4P5 718 aa14.32□□□□□ -0.12
TPM3-223ENST00000611659 TXNDC2Q86VQ3 553 aa14.32□□□□□ -0.12
TPM3-223ENST00000611659 KIAA1524Q8TCG1 905 aa14.32□□□□□ -0.12
TPM3-223ENST00000611659 RTF1Q92541 710 aaKnown RBP14.32□□□□□ -0.12
TPM3-223ENST00000611659 KCNF1Q9H3M0 494 aa14.32□□□□□ -0.12
TPM3-223ENST00000611659 LRRFIP2Q9Y608 721 aaKnown RBP14.32□□□□□ -0.12
TPM3-223ENST00000611659 MLH3Q9UHC1 1453 aa14.32□□□□□ -0.12
TPM3-223ENST00000611659 EDC4Q6P2E9 1401 aaKnown RBP14.32□□□□□ -0.12
TPM3-223ENST00000611659 F13A1P00488 732 aa14.32□□□□□ -0.12
TPM3-223ENST00000611659 TMEM87AQ8NBN3 555 aa14.32□□□□□ -0.12
TPM3-223ENST00000611659 KIAA0232Q92628 1395 aa14.32□□□□□ -0.12
TPM3-223ENST00000611659 ATP7BP35670 1465 aa14.32□□□□□ -0.12
TPM3-223ENST00000611659 BCL11BQ9C0K0 894 aaPredicted RBP14.32□□□□□ -0.12
TPM3-223ENST00000611659 VPS37CA5D8V6 355 aaPredicted RBP14.31□□□□□ -0.12
TPM3-223ENST00000611659 WASLO00401 505 aaPredicted RBP14.31□□□□□ -0.12
TPM3-223ENST00000611659 NUDT16Q96DE0 195 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms