RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 TEFQ10587 303 aa26.26■■□□□ 1.79
SHKBP1-222ENST00000600320 UPF1Q92900 1129 aaKnown RBP eCLIP26.26■■□□□ 1.79
SHKBP1-222ENST00000600320 BTAF1O14981 1849 aa26.25■■□□□ 1.79
SHKBP1-222ENST00000600320 TNS1Q9HBL0 1735 aaKnown RBP26.25■■□□□ 1.79
SHKBP1-222ENST00000600320 HNRNPUQ00839 825 aaKnown RBP eCLIP26.23■■□□□ 1.79
SHKBP1-222ENST00000600320 ZNF521Q96K83 1311 aa26.22■■□□□ 1.79
SHKBP1-222ENST00000600320 NGEFQ8N5V2 710 aa26.22■■□□□ 1.79
SHKBP1-222ENST00000600320 TAF7Q15545 349 aaPredicted RBP26.2■■□□□ 1.78
SHKBP1-222ENST00000600320 ATG3Q9NT62 314 aa26.2■■□□□ 1.78
SHKBP1-222ENST00000600320 MIS18AQ9NYP9 233 aa26.2■■□□□ 1.78
SHKBP1-222ENST00000600320 ASAP1Q9ULH1 1129 aa26.2■■□□□ 1.78
SHKBP1-222ENST00000600320 PAPPAQ13219 1627 aa26.19■■□□□ 1.78
SHKBP1-222ENST00000600320 SLC39A6Q13433 755 aa26.19■■□□□ 1.78
SHKBP1-222ENST00000600320 KCNQ3O43525 872 aa26.18■■□□□ 1.78
SHKBP1-222ENST00000600320 BTBD11A6QL63 1104 aa26.17■■□□□ 1.78
SHKBP1-222ENST00000600320 APBA3O96018 575 aa26.17■■□□□ 1.78
SHKBP1-222ENST00000600320 WDR63Q8IWG1 891 aa26.16■■□□□ 1.78
SHKBP1-222ENST00000600320 LAS1LQ9Y4W2 734 aaKnown RBP26.16■■□□□ 1.78
SHKBP1-222ENST00000600320 ZNF853P0CG23 659 aa26.15■■□□□ 1.78
SHKBP1-222ENST00000600320 SPINK5Q9NQ38 1064 aaPredicted RBP26.15■■□□□ 1.78
SHKBP1-222ENST00000600320 PALLDQ8WX93 1383 aa26.15■■□□□ 1.78
SHKBP1-222ENST00000600320 KDM3BQ7LBC6 1761 aa26.15■■□□□ 1.78
SHKBP1-222ENST00000600320 CHL1O00533 1208 aa26.14■■□□□ 1.78
SHKBP1-222ENST00000600320 CALD1Q05682 793 aaKnown RBP26.14■■□□□ 1.78
SHKBP1-222ENST00000600320 ZNF790Q6PG37 636 aa26.13■■□□□ 1.77
SHKBP1-222ENST00000600320 CFAP44Q96MT7 982 aa26.13■■□□□ 1.77
SHKBP1-222ENST00000600320 IFT57Q9NWB7 429 aa26.13■■□□□ 1.77
SHKBP1-222ENST00000600320 TSPYL4Q9UJ04 414 aa26.13■■□□□ 1.77
SHKBP1-222ENST00000600320 KCPQ6ZWJ8 1503 aa26.13■■□□□ 1.77
SHKBP1-222ENST00000600320 EP400Q96L91 3159 aa26.13■■□□□ 1.77
SHKBP1-222ENST00000600320 IL16Q14005 1332 aa26.13■■□□□ 1.77
SHKBP1-222ENST00000600320 DEFB132Q7Z7B7 95 aa26.12■■□□□ 1.77
SHKBP1-222ENST00000600320 SMARCC1Q92922 1105 aaPredicted RBP26.12■■□□□ 1.77
SHKBP1-222ENST00000600320 UBR2Q8IWV8 1755 aa26.11■■□□□ 1.77
SHKBP1-222ENST00000600320 SF3B2Q13435 895 aaKnown RBP26.11■■□□□ 1.77
SHKBP1-222ENST00000600320 CCDC125Q86Z20 511 aa26.11■■□□□ 1.77
SHKBP1-222ENST00000600320 MBIPQ9NS73 344 aa26.11■■□□□ 1.77
SHKBP1-222ENST00000600320 GNAI1P63096 354 aa26.1■■□□□ 1.77
SHKBP1-222ENST00000600320 BABAM1Q9NWV8 329 aa26.1■■□□□ 1.77
SHKBP1-222ENST00000600320 LY75O60449 1722 aa26.1■■□□□ 1.77
SHKBP1-222ENST00000600320 PLSCR1O15162 318 aa26.09■■□□□ 1.77
SHKBP1-222ENST00000600320 PTCD1O75127 700 aaKnown RBP26.09■■□□□ 1.77
SHKBP1-222ENST00000600320 EN1Q05925 392 aaPredicted RBP26.09■■□□□ 1.77
SHKBP1-222ENST00000600320 CDCA7LQ96GN5 454 aa26.09■■□□□ 1.77
SHKBP1-222ENST00000600320 ZNF496Q96IT1 587 aaPredicted RBP26.09■■□□□ 1.77
SHKBP1-222ENST00000600320 YTHDC1Q96MU7 727 aaKnown RBP26.09■■□□□ 1.77
SHKBP1-222ENST00000600320 SLC4A9Q96Q91 983 aa26.09■■□□□ 1.77
SHKBP1-222ENST00000600320 ZBED9Q6R2W3 1325 aa26.09■■□□□ 1.77
SHKBP1-222ENST00000600320 GOLGA2Q08379 1002 aa26.08■■□□□ 1.77
SHKBP1-222ENST00000600320 TTC5Q8N0Z6 440 aa26.08■■□□□ 1.77
SHKBP1-222ENST00000600320 TSR2Q969E8 191 aaKnown RBP26.08■■□□□ 1.77
SHKBP1-222ENST00000600320 BAG6P46379 1132 aa26.07■■□□□ 1.76
SHKBP1-222ENST00000600320 KCNQ4P56696 695 aa26.07■■□□□ 1.76
SHKBP1-222ENST00000600320 PROM2Q8N271 834 aa26.07■■□□□ 1.76
SHKBP1-222ENST00000600320 CAMKK2Q96RR4 588 aa26.07■■□□□ 1.76
SHKBP1-222ENST00000600320 RBM42Q9BTD8 480 aaKnown RBP26.07■■□□□ 1.76
SHKBP1-222ENST00000600320 LOC102724428A0A0B4J2F2 783 aa26.06■■□□□ 1.76
SHKBP1-222ENST00000600320 SIK1P57059 783 aa26.06■■□□□ 1.76
SHKBP1-222ENST00000600320 EIF4A1P60842 406 aaKnown RBP26.06■■□□□ 1.76
SHKBP1-222ENST00000600320 EZH2Q15910 746 aaKnown RBP26.06■■□□□ 1.76
SHKBP1-222ENST00000600320 RGPD3A6NKT7 1758 aaPredicted RBP26.05■■□□□ 1.76
SHKBP1-222ENST00000600320 RGPD4Q7Z3J3 1758 aa26.05■■□□□ 1.76
SHKBP1-222ENST00000600320 TXNRD1Q16881 649 aa26.05■■□□□ 1.76
SHKBP1-222ENST00000600320 SLFN5Q08AF3 891 aa26.04■■□□□ 1.76
SHKBP1-222ENST00000600320 KRT24Q2M2I5 525 aa26.04■■□□□ 1.76
SHKBP1-222ENST00000600320 FMNL2Q96PY5 1086 aa26.04■■□□□ 1.76
SHKBP1-222ENST00000600320 FANCIQ9NVI1 1328 aa26.04■■□□□ 1.76
SHKBP1-222ENST00000600320 HEG1Q9ULI3 1381 aa26.04■■□□□ 1.76
SHKBP1-222ENST00000600320 LRRC4BQ9NT99 713 aa26.03■■□□□ 1.76
SHKBP1-222ENST00000600320 CCNL1Q9UK58 526 aaPredicted RBP26.03■■□□□ 1.76
SHKBP1-222ENST00000600320 ITPK1Q13572 414 aa26.02■■□□□ 1.76
SHKBP1-222ENST00000600320 TJP1Q07157 1748 aa26.02■■□□□ 1.76
SHKBP1-222ENST00000600320 PRAMEF22A3QJZ6 481 aa26.01■■□□□ 1.75
SHKBP1-222ENST00000600320 E9PSI1 815 aa26.01■■□□□ 1.75
SHKBP1-222ENST00000600320 ATP6V1AP38606 617 aa26.01■■□□□ 1.75
SHKBP1-222ENST00000600320 DNAJC10Q8IXB1 793 aa26■■□□□ 1.75
SHKBP1-222ENST00000600320 MYH16Q9H6N6 1097 aa26■■□□□ 1.75
SHKBP1-222ENST00000600320 ZNF831Q5JPB2 1677 aa25.99■■□□□ 1.75
SHKBP1-222ENST00000600320 SLC27A3Q5K4L6 730 aa25.99■■□□□ 1.75
SHKBP1-222ENST00000600320 TRMT2AQ8IZ69 625 aaKnown RBP25.99■■□□□ 1.75
SHKBP1-222ENST00000600320 C5P01031 1676 aa25.99■■□□□ 1.75
SHKBP1-222ENST00000600320 RREB1Q92766 1687 aa25.99■■□□□ 1.75
SHKBP1-222ENST00000600320 GIGYF1O75420 1035 aaPredicted RBP25.98■■□□□ 1.75
SHKBP1-222ENST00000600320 VSIG10Q8N0Z9 540 aa25.98■■□□□ 1.75
SHKBP1-222ENST00000600320 C8orf58Q8NAV2 365 aa25.98■■□□□ 1.75
SHKBP1-222ENST00000600320 CICQ96RK0 1608 aaPredicted RBP25.98■■□□□ 1.75
SHKBP1-222ENST00000600320 SNRPA1P09661 255 aaKnown RBP25.97■■□□□ 1.75
SHKBP1-222ENST00000600320 LINC00116Q8NCU8 138 aa25.97■■□□□ 1.75
SHKBP1-222ENST00000600320 DUSP27Q5VZP5 1158 aa25.96■■□□□ 1.75
SHKBP1-222ENST00000600320 TSPYL6Q8N831 410 aa25.96■■□□□ 1.75
SHKBP1-222ENST00000600320 USP16Q9Y5T5 823 aa25.96■■□□□ 1.75
SHKBP1-222ENST00000600320 TAF1LQ8IZX4 1826 aa25.95■■□□□ 1.75
SHKBP1-222ENST00000600320 NUP188Q5SRE5 1749 aa25.95■■□□□ 1.74
SHKBP1-222ENST00000600320 EXOSC9Q06265 439 aaKnown RBP25.95■■□□□ 1.74
SHKBP1-222ENST00000600320 ELL2O00472 640 aaPredicted RBP25.94■■□□□ 1.74
SHKBP1-222ENST00000600320 COL5A3P25940 1745 aaPredicted RBP25.94■■□□□ 1.74
SHKBP1-222ENST00000600320 CYP19A1P11511 503 aaPredicted RBP25.92■■□□□ 1.74
SHKBP1-222ENST00000600320 LAMB4A4D0S4 1761 aa25.92■■□□□ 1.74
SHKBP1-222ENST00000600320 C4BP0C0L5 1744 aa25.9■■□□□ 1.74
SHKBP1-222ENST00000600320 TWISTNBQ3B726 338 aaPredicted RBP25.89■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms