RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 GPBP1L1Q9HC44 474 aaPredicted RBP21.73■■□□□ 1.07
LSM4-206ENST00000600289 LRRC4BQ9NT99 713 aa21.73■■□□□ 1.07
LSM4-206ENST00000600289 GRIN3BO60391 1043 aa21.72■■□□□ 1.07
LSM4-206ENST00000600289 HMOX1P09601 288 aa21.72■■□□□ 1.07
LSM4-206ENST00000600289 SLC27A3Q5K4L6 730 aa21.72■■□□□ 1.07
LSM4-206ENST00000600289 ZNF530Q6P9A1 599 aaPredicted RBP21.72■■□□□ 1.07
LSM4-206ENST00000600289 SLC16A10Q8TF71 515 aa21.72■■□□□ 1.07
LSM4-206ENST00000600289 DCAF5Q96JK2 942 aa21.72■■□□□ 1.07
LSM4-206ENST00000600289 POLD1P28340 1107 aa21.71■■□□□ 1.07
LSM4-206ENST00000600289 AKT1S1Q96B36 256 aa21.71■■□□□ 1.07
LSM4-206ENST00000600289 MRC1P22897 1456 aa21.71■■□□□ 1.07
LSM4-206ENST00000600289 NUDCQ9Y266 331 aa21.7■■□□□ 1.06
LSM4-206ENST00000600289 PNPLA7Q6ZV29 1317 aa21.7■■□□□ 1.06
LSM4-206ENST00000600289 CICQ96RK0 1608 aaPredicted RBP21.69■■□□□ 1.06
LSM4-206ENST00000600289 ERVV-2B6SEH9 535 aa21.69■■□□□ 1.06
LSM4-206ENST00000600289 U2SURPO15042 1029 aaKnown RBP21.69■■□□□ 1.06
LSM4-206ENST00000600289 C1orf141Q5JVX7 400 aa21.69■■□□□ 1.06
LSM4-206ENST00000600289 MPRIPQ6WCQ1 1025 aa21.69■■□□□ 1.06
LSM4-206ENST00000600289 SIPA1L3O60292 1781 aaPredicted RBP21.69■■□□□ 1.06
LSM4-206ENST00000600289 AKAP4Q5JQC9 854 aa21.68■■□□□ 1.06
LSM4-206ENST00000600289 PALLDQ8WX93 1383 aa21.68■■□□□ 1.06
LSM4-206ENST00000600289 PIGBQ92521 554 aa21.67■■□□□ 1.06
LSM4-206ENST00000600289 SMARCC1Q92922 1105 aaPredicted RBP21.67■■□□□ 1.06
LSM4-206ENST00000600289 TMOD3Q9NYL9 352 aa21.67■■□□□ 1.06
LSM4-206ENST00000600289 ZNF526Q8TF50 670 aaPredicted RBP21.66■■□□□ 1.06
LSM4-206ENST00000600289 RSPH6AQ9H0K4 717 aa21.66■■□□□ 1.06
LSM4-206ENST00000600289 COL5A3P25940 1745 aaPredicted RBP21.66■■□□□ 1.06
LSM4-206ENST00000600289 WDR90Q96KV7 1748 aa21.66■■□□□ 1.06
LSM4-206ENST00000600289 MYBBP1AQ9BQG0 1328 aaKnown RBP21.65■■□□□ 1.06
LSM4-206ENST00000600289 ZNF316A6NFI3 1004 aaPredicted RBP21.65■■□□□ 1.06
LSM4-206ENST00000600289 HMGB2P26583 209 aaKnown RBP21.65■■□□□ 1.06
LSM4-206ENST00000600289 C4BP0C0L5 1744 aa21.65■■□□□ 1.06
LSM4-206ENST00000600289 MTHFSDQ2M296 383 aaKnown RBP21.64■■□□□ 1.05
LSM4-206ENST00000600289 DNAJC5GQ8N7S2 189 aa21.64■■□□□ 1.05
LSM4-206ENST00000600289 DLG5Q8TDM6 1919 aa21.64■■□□□ 1.05
LSM4-206ENST00000600289 UBR2Q8IWV8 1755 aa21.64■■□□□ 1.05
LSM4-206ENST00000600289 CCNL1Q9UK58 526 aaPredicted RBP21.63■■□□□ 1.05
LSM4-206ENST00000600289 UBR3Q6ZT12 1888 aa21.62■■□□□ 1.05
LSM4-206ENST00000600289 KIF3CO14782 793 aa21.62■■□□□ 1.05
LSM4-206ENST00000600289 FCHSD2O94868 740 aa21.62■■□□□ 1.05
LSM4-206ENST00000600289 GAS2L2Q8NHY3 880 aa21.62■■□□□ 1.05
LSM4-206ENST00000600289 U2AF1L5P0DN76 240 aaPredicted RBP21.61■■□□□ 1.05
LSM4-206ENST00000600289 U2AF1Q01081 240 aaKnown RBP eCLIP21.61■■□□□ 1.05
LSM4-206ENST00000600289 PRKAR2BP31323 418 aa21.6■■□□□ 1.05
LSM4-206ENST00000600289 COL13A1Q5TAT6 717 aaPredicted RBP21.6■■□□□ 1.05
LSM4-206ENST00000600289 PRKRIP1Q9H875 184 aaPredicted RBP21.6■■□□□ 1.05
LSM4-206ENST00000600289 TJP1Q07157 1748 aa21.6■■□□□ 1.05
LSM4-206ENST00000600289 APLP1P51693 650 aa21.59■■□□□ 1.05
LSM4-206ENST00000600289 CABP4P57796 275 aa21.59■■□□□ 1.05
LSM4-206ENST00000600289 ATG3Q9NT62 314 aa21.59■■□□□ 1.05
LSM4-206ENST00000600289 PCNTO95613 3336 aa21.59■■□□□ 1.05
LSM4-206ENST00000600289 CAPN15O75808 1086 aa21.58■■□□□ 1.05
LSM4-206ENST00000600289 ASAP1Q9ULH1 1129 aa21.58■■□□□ 1.05
LSM4-206ENST00000600289 RNMTO43148 476 aaKnown RBP21.57■■□□□ 1.04
LSM4-206ENST00000600289 PHACTR3Q96KR7 559 aa21.57■■□□□ 1.04
LSM4-206ENST00000600289 LOC102724428A0A0B4J2F2 783 aa21.56■■□□□ 1.04
LSM4-206ENST00000600289 SIK1P57059 783 aa21.56■■□□□ 1.04
LSM4-206ENST00000600289 SLC52A2Q9HAB3 445 aa21.56■■□□□ 1.04
LSM4-206ENST00000600289 GNAT3A8MTJ3 354 aa21.55■■□□□ 1.04
LSM4-206ENST00000600289 KCNQ4P56696 695 aa21.55■■□□□ 1.04
LSM4-206ENST00000600289 NFATC2IPQ8NCF5 419 aa21.55■■□□□ 1.04
LSM4-206ENST00000600289 LGR6Q9HBX8 967 aa21.55■■□□□ 1.04
LSM4-206ENST00000600289 CEMIPQ8WUJ3 1361 aa21.55■■□□□ 1.04
LSM4-206ENST00000600289 TFCP2L1Q9NZI6 479 aa21.54■■□□□ 1.04
LSM4-206ENST00000600289 KCPQ6ZWJ8 1503 aa21.54■■□□□ 1.04
LSM4-206ENST00000600289 PNNQ9H307 717 aaKnown RBP21.53■■□□□ 1.04
LSM4-206ENST00000600289 PLEKHF1Q96S99 279 aa21.52■■□□□ 1.04
LSM4-206ENST00000600289 PRELPP51888 382 aa21.51■■□□□ 1.03
LSM4-206ENST00000600289 MYH14Q7Z406 1995 aaKnown RBP21.5■■□□□ 1.03
LSM4-206ENST00000600289 IL17REQ8NFR9 667 aa21.5■■□□□ 1.03
LSM4-206ENST00000600289 HTATSF1O43719 755 aaKnown RBP21.49■■□□□ 1.03
LSM4-206ENST00000600289 ATP6V1AP38606 617 aa21.49■■□□□ 1.03
LSM4-206ENST00000600289 ITPK1Q13572 414 aa21.49■■□□□ 1.03
LSM4-206ENST00000600289 SLC4A9Q96Q91 983 aa21.49■■□□□ 1.03
LSM4-206ENST00000600289 NEFMP07197 916 aa21.48■■□□□ 1.03
LSM4-206ENST00000600289 COL23A1Q86Y22 540 aaPredicted RBP21.48■■□□□ 1.03
LSM4-206ENST00000600289 LINC00116Q8NCU8 138 aa21.48■■□□□ 1.03
LSM4-206ENST00000600289 CD2APQ9Y5K6 639 aa21.48■■□□□ 1.03
LSM4-206ENST00000600289 C4AP0C0L4 1744 aa21.47■■□□□ 1.03
LSM4-206ENST00000600289 KDM3BQ7LBC6 1761 aa21.47■■□□□ 1.03
LSM4-206ENST00000600289 MSL1Q68DK7 614 aa21.47■■□□□ 1.03
LSM4-206ENST00000600289 FLAD1Q8NFF5 587 aa21.47■■□□□ 1.03
LSM4-206ENST00000600289 TEFQ10587 303 aa21.45■■□□□ 1.02
LSM4-206ENST00000600289 TNS4Q8IZW8 715 aa21.45■■□□□ 1.02
LSM4-206ENST00000600289 JMYQ8N9B5 988 aa21.45■■□□□ 1.02
LSM4-206ENST00000600289 AK7Q96M32 723 aa21.45■■□□□ 1.02
LSM4-206ENST00000600289 RBM42Q9BTD8 480 aaKnown RBP21.45■■□□□ 1.02
LSM4-206ENST00000600289 CNTNAP4Q9C0A0 1308 aa21.45■■□□□ 1.02
LSM4-206ENST00000600289 NFE2L2Q16236 605 aa21.44■■□□□ 1.02
LSM4-206ENST00000600289 RC3H1Q5TC82 1133 aaKnown RBP21.44■■□□□ 1.02
LSM4-206ENST00000600289 MAPK8IP3Q9UPT6 1336 aa21.44■■□□□ 1.02
LSM4-206ENST00000600289 TOMM70O94826 608 aa21.43■■□□□ 1.02
LSM4-206ENST00000600289 SSFA2P28290 1259 aa21.43■■□□□ 1.02
LSM4-206ENST00000600289 VSIG10Q8N0Z9 540 aa21.43■■□□□ 1.02
LSM4-206ENST00000600289 RTF1Q92541 710 aaKnown RBP21.43■■□□□ 1.02
LSM4-206ENST00000600289 PTCD1O75127 700 aaKnown RBP21.42■■□□□ 1.02
LSM4-206ENST00000600289 KLRG1Q96E93 195 aa21.42■■□□□ 1.02
LSM4-206ENST00000600289 LAMB4A4D0S4 1761 aa21.41■■□□□ 1.02
LSM4-206ENST00000600289 KIAA1551Q9HCM1 1747 aa21.41■■□□□ 1.02
LSM4-206ENST00000600289 SLC34A2O95436 690 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms