RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 RRP1P56182 461 aaKnown RBP28.74■■■□□ 2.19
ATG4D-209ENST00000588857 THRAP3Q9Y2W1 955 aaKnown RBP28.74■■■□□ 2.19
ATG4D-209ENST00000588857 SHANK3Q9BYB0 1731 aa28.73■■■□□ 2.19
ATG4D-209ENST00000588857 FKBP8Q14318 412 aa28.73■■■□□ 2.19
ATG4D-209ENST00000588857 MIS18AQ9NYP9 233 aa28.73■■■□□ 2.19
ATG4D-209ENST00000588857 DISP2A7MBM2 1401 aa28.72■■■□□ 2.19
ATG4D-209ENST00000588857 DCAF5Q96JK2 942 aa28.71■■■□□ 2.19
ATG4D-209ENST00000588857 RARSP54136 660 aaKnown RBP28.71■■■□□ 2.19
ATG4D-209ENST00000588857 CDCA7Q9BWT1 371 aaPredicted RBP28.71■■■□□ 2.19
ATG4D-209ENST00000588857 SIPA1L3O60292 1781 aaPredicted RBP28.7■■■□□ 2.19
ATG4D-209ENST00000588857 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.7■■■□□ 2.18
ATG4D-209ENST00000588857 IRX6P78412 446 aaPredicted RBP28.69■■■□□ 2.18
ATG4D-209ENST00000588857 CCDC125Q86Z20 511 aa28.69■■■□□ 2.18
ATG4D-209ENST00000588857 KDM6AO15550 1401 aaPredicted RBP28.68■■■□□ 2.18
ATG4D-209ENST00000588857 BCAR3O75815 825 aa28.68■■■□□ 2.18
ATG4D-209ENST00000588857 DDX54Q8TDD1 881 aaKnown RBP28.68■■■□□ 2.18
ATG4D-209ENST00000588857 ZNF428Q96B54 188 aa28.68■■■□□ 2.18
ATG4D-209ENST00000588857 TWISTNBQ3B726 338 aaPredicted RBP28.67■■■□□ 2.18
ATG4D-209ENST00000588857 C8orf58Q8NAV2 365 aa28.67■■■□□ 2.18
ATG4D-209ENST00000588857 EP400Q96L91 3159 aa28.67■■■□□ 2.18
ATG4D-209ENST00000588857 KDM3BQ7LBC6 1761 aa28.67■■■□□ 2.18
ATG4D-209ENST00000588857 ELL2O00472 640 aaPredicted RBP28.66■■■□□ 2.18
ATG4D-209ENST00000588857 TSPYL6Q8N831 410 aa28.66■■■□□ 2.18
ATG4D-209ENST00000588857 BTBD11A6QL63 1104 aa28.65■■■□□ 2.18
ATG4D-209ENST00000588857 EXOC5O00471 708 aa28.65■■■□□ 2.18
ATG4D-209ENST00000588857 VAMP4O75379 141 aa28.65■■■□□ 2.18
ATG4D-209ENST00000588857 THSD7AQ9UPZ6 1657 aa28.65■■■□□ 2.18
ATG4D-209ENST00000588857 BRWD3Q6RI45 1802 aa28.65■■■□□ 2.18
ATG4D-209ENST00000588857 PLIN1O60240 522 aa28.63■■■□□ 2.17
ATG4D-209ENST00000588857 NKX1-1Q15270 411 aaPredicted RBP28.63■■■□□ 2.17
ATG4D-209ENST00000588857 SLC52A2Q9HAB3 445 aa28.63■■■□□ 2.17
ATG4D-209ENST00000588857 BCL2L13Q9BXK5 485 aa28.62■■■□□ 2.17
ATG4D-209ENST00000588857 SMC4Q9NTJ3 1288 aa28.62■■■□□ 2.17
ATG4D-209ENST00000588857 ALDH1L2Q3SY69 923 aa28.62■■■□□ 2.17
ATG4D-209ENST00000588857 MRC1P22897 1456 aa28.61■■■□□ 2.17
ATG4D-209ENST00000588857 FAM182BQ5T319 152 aa28.61■■■□□ 2.17
ATG4D-209ENST00000588857 SSH1Q8WYL5 1049 aa28.61■■■□□ 2.17
ATG4D-209ENST00000588857 CANXP27824 592 aaKnown RBP28.6■■■□□ 2.17
ATG4D-209ENST00000588857 KRT24Q2M2I5 525 aa28.6■■■□□ 2.17
ATG4D-209ENST00000588857 TNS2Q63HR2 1409 aa28.6■■■□□ 2.17
ATG4D-209ENST00000588857 CABP4P57796 275 aa28.59■■■□□ 2.17
ATG4D-209ENST00000588857 NFATC2IPQ8NCF5 419 aa28.59■■■□□ 2.17
ATG4D-209ENST00000588857 DDB1Q16531 1140 aa28.58■■■□□ 2.17
ATG4D-209ENST00000588857 ERVV-2B6SEH9 535 aa28.58■■■□□ 2.17
ATG4D-209ENST00000588857 FRAT1Q92837 279 aaPredicted RBP28.58■■■□□ 2.17
ATG4D-209ENST00000588857 ERICH6BQ5W0A0 696 aa28.57■■■□□ 2.16
ATG4D-209ENST00000588857 SOS1Q07889 1333 aaPredicted RBP28.57■■■□□ 2.16
ATG4D-209ENST00000588857 EIF4A1P60842 406 aaKnown RBP28.54■■■□□ 2.16
ATG4D-209ENST00000588857 SF3B2Q13435 895 aaKnown RBP28.54■■■□□ 2.16
ATG4D-209ENST00000588857 FAM196AQ6ZSG2 479 aa28.54■■■□□ 2.16
ATG4D-209ENST00000588857 KAT6BQ8WYB5 2073 aa28.54■■■□□ 2.16
ATG4D-209ENST00000588857 TOGARAM1Q9Y4F4 1720 aa28.53■■■□□ 2.16
ATG4D-209ENST00000588857 KCNQ3O43525 872 aa28.53■■■□□ 2.16
ATG4D-209ENST00000588857 KIF16BQ96L93 1317 aa28.53■■■□□ 2.16
ATG4D-209ENST00000588857 BRPF1P55201 1214 aaPredicted RBP28.51■■■□□ 2.15
ATG4D-209ENST00000588857 ZNF790Q6PG37 636 aa28.51■■■□□ 2.15
ATG4D-209ENST00000588857 ITGB4P16144 1822 aa28.5■■■□□ 2.15
ATG4D-209ENST00000588857 ZKSCAN2Q63HK3 967 aa28.5■■■□□ 2.15
ATG4D-209ENST00000588857 CACNA1FO60840 1977 aa28.5■■■□□ 2.15
ATG4D-209ENST00000588857 TCERG1O14776 1098 aaKnown RBP28.5■■■□□ 2.15
ATG4D-209ENST00000588857 IPO8O15397 1037 aaKnown RBP28.5■■■□□ 2.15
ATG4D-209ENST00000588857 TTC5Q8N0Z6 440 aa28.5■■■□□ 2.15
ATG4D-209ENST00000588857 MRPL50Q8N5N7 158 aaKnown RBP28.5■■■□□ 2.15
ATG4D-209ENST00000588857 SLC39A6Q13433 755 aa28.49■■■□□ 2.15
ATG4D-209ENST00000588857 PDE3AQ14432 1141 aa28.49■■■□□ 2.15
ATG4D-209ENST00000588857 C20orf194Q5TEA3 1177 aa28.49■■■□□ 2.15
ATG4D-209ENST00000588857 CHMP4AQ9BY43 222 aa28.49■■■□□ 2.15
ATG4D-209ENST00000588857 HOXB7P09629 217 aa28.48■■■□□ 2.15
ATG4D-209ENST00000588857 DEFB132Q7Z7B7 95 aa28.48■■■□□ 2.15
ATG4D-209ENST00000588857 NOB1Q9ULX3 412 aaKnown RBP28.48■■■□□ 2.15
ATG4D-209ENST00000588857 CCDC30Q5VVM6 783 aa28.47■■■□□ 2.15
ATG4D-209ENST00000588857 TMOD3Q9NYL9 352 aa28.47■■■□□ 2.15
ATG4D-209ENST00000588857 MS4A1P11836 297 aa28.46■■■□□ 2.15
ATG4D-209ENST00000588857 STK31Q9BXU1 1019 aa28.45■■■□□ 2.15
ATG4D-209ENST00000588857 DOT1LQ8TEK3 1739 aa28.45■■■□□ 2.14
ATG4D-209ENST00000588857 HEG1Q9ULI3 1381 aa28.44■■■□□ 2.14
ATG4D-209ENST00000588857 TRIM37O94972 964 aa28.44■■■□□ 2.14
ATG4D-209ENST00000588857 HDGFL1Q5TGJ6 251 aa28.44■■■□□ 2.14
ATG4D-209ENST00000588857 ATF7IPQ6VMQ6 1270 aa28.44■■■□□ 2.14
ATG4D-209ENST00000588857 MARCH10Q8NA82 808 aaPredicted RBP28.44■■■□□ 2.14
ATG4D-209ENST00000588857 CRBNQ96SW2 442 aa28.44■■■□□ 2.14
ATG4D-209ENST00000588857 BAG6P46379 1132 aa28.43■■■□□ 2.14
ATG4D-209ENST00000588857 PAPPAQ13219 1627 aa28.43■■■□□ 2.14
ATG4D-209ENST00000588857 GIGYF1O75420 1035 aaPredicted RBP28.42■■■□□ 2.14
ATG4D-209ENST00000588857 SLC4A2P04920 1241 aa28.42■■■□□ 2.14
ATG4D-209ENST00000588857 EXOC6Q8TAG9 804 aa28.42■■■□□ 2.14
ATG4D-209ENST00000588857 UBR2Q8IWV8 1755 aa28.42■■■□□ 2.14
ATG4D-209ENST00000588857 FTSJ3Q8IY81 847 aaKnown RBP28.41■■■□□ 2.14
ATG4D-209ENST00000588857 ARHGAP45Q92619 1136 aa28.41■■■□□ 2.14
ATG4D-209ENST00000588857 FMNL2Q96PY5 1086 aa28.41■■■□□ 2.14
ATG4D-209ENST00000588857 DZIP1LQ8IYY4 767 aaKnown RBP28.41■■■□□ 2.14
ATG4D-209ENST00000588857 PANK1Q8TE04 598 aa28.41■■■□□ 2.14
ATG4D-209ENST00000588857 NECTIN2Q92692 538 aa28.41■■■□□ 2.14
ATG4D-209ENST00000588857 ZNF496Q96IT1 587 aaPredicted RBP28.41■■■□□ 2.14
ATG4D-209ENST00000588857 TRIM27P14373 513 aa28.4■■■□□ 2.14
ATG4D-209ENST00000588857 EIF2S2P20042 333 aaKnown RBP28.4■■■□□ 2.14
ATG4D-209ENST00000588857 CLUAP1Q96AJ1 413 aa28.4■■■□□ 2.14
ATG4D-209ENST00000588857 PPP4R2Q9NY27 417 aa28.4■■■□□ 2.14
ATG4D-209ENST00000588857 C5P01031 1676 aa28.39■■■□□ 2.14
ATG4D-209ENST00000588857 PIGBQ92521 554 aa28.38■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms