RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 TSPOAP1O95153 1857 aa20.85■□□□□ 0.93
VPS53-215ENST00000573028 REREQ9P2R6 1566 aa20.84■□□□□ 0.93
VPS53-215ENST00000573028 FLIIQ13045 1269 aa20.84■□□□□ 0.93
VPS53-215ENST00000573028 NGDNQ8NEJ9 315 aaKnown RBP20.84■□□□□ 0.93
VPS53-215ENST00000573028 ESYT1Q9BSJ8 1104 aa20.84■□□□□ 0.93
VPS53-215ENST00000573028 MCCP23508 829 aa20.83■□□□□ 0.93
VPS53-215ENST00000573028 LRRFIP2Q9Y608 721 aaKnown RBP20.83■□□□□ 0.93
VPS53-215ENST00000573028 GDPD2Q9HCC8 539 aa20.83■□□□□ 0.93
VPS53-215ENST00000573028 CRB1P82279 1406 aa20.83■□□□□ 0.92
VPS53-215ENST00000573028 EYA1Q99502 592 aa20.82■□□□□ 0.92
VPS53-215ENST00000573028 PPP6R1Q9UPN7 881 aa20.82■□□□□ 0.92
VPS53-215ENST00000573028 UNC5CLQ8IV45 518 aa20.82■□□□□ 0.92
VPS53-215ENST00000573028 IBTKQ9P2D0 1353 aaPredicted RBP20.82■□□□□ 0.92
VPS53-215ENST00000573028 ZBTB7CA1YPR0 619 aa20.82■□□□□ 0.92
VPS53-215ENST00000573028 NUTM1Q86Y26 1132 aa20.81■□□□□ 0.92
VPS53-215ENST00000573028 GNAI3P08754 354 aa20.8■□□□□ 0.92
VPS53-215ENST00000573028 OSBPL3Q9H4L5 887 aa20.8■□□□□ 0.92
VPS53-215ENST00000573028 CHMLP26374 656 aa20.8■□□□□ 0.92
VPS53-215ENST00000573028 LARP6Q9BRS8 491 aaKnown RBP20.8■□□□□ 0.92
VPS53-215ENST00000573028 CCDC30Q5VVM6 783 aa20.79■□□□□ 0.92
VPS53-215ENST00000573028 XPCQ01831 940 aaPredicted RBP20.79■□□□□ 0.92
VPS53-215ENST00000573028 C14orf37Q86TY3 774 aa20.78■□□□□ 0.92
VPS53-215ENST00000573028 SETD1AO15047 1707 aaKnown RBP20.78■□□□□ 0.92
VPS53-215ENST00000573028 MPNDQ8N594 471 aa20.78■□□□□ 0.92
VPS53-215ENST00000573028 DTNBO60941 627 aa20.77■□□□□ 0.92
VPS53-215ENST00000573028 PLEKHG5O94827 1062 aa20.77■□□□□ 0.92
VPS53-215ENST00000573028 NLRP6P59044 892 aa20.77■□□□□ 0.92
VPS53-215ENST00000573028 R3HCC1Q9Y3T6 440 aaKnown RBP20.77■□□□□ 0.92
VPS53-215ENST00000573028 SPATA31D1Q6ZQQ2 1576 aa20.77■□□□□ 0.92
VPS53-215ENST00000573028 NRXN3Q9Y4C0 1643 aa20.77■□□□□ 0.92
VPS53-215ENST00000573028 PLEKHG3A1L390 1219 aa20.77■□□□□ 0.92
VPS53-215ENST00000573028 EIF2S2P20042 333 aaKnown RBP20.77■□□□□ 0.92
VPS53-215ENST00000573028 USP6P35125 1406 aa20.77■□□□□ 0.92
VPS53-215ENST00000573028 ATP8B2P98198 1209 aa20.77■□□□□ 0.92
VPS53-215ENST00000573028 MON2Q7Z3U7 1717 aa20.76■□□□□ 0.91
VPS53-215ENST00000573028 OVOS2A0A0J9YW53 1432 aa20.76■□□□□ 0.91
VPS53-215ENST00000573028 OVOS2Q6IE36 1432 aa20.76■□□□□ 0.91
VPS53-215ENST00000573028 UBTFL1P0CB47 393 aaPredicted RBP20.76■□□□□ 0.91
VPS53-215ENST00000573028 LTKP29376 864 aa20.76■□□□□ 0.91
VPS53-215ENST00000573028 LRSAM1Q6UWE0 723 aa20.76■□□□□ 0.91
VPS53-215ENST00000573028 C3P01024 1663 aa20.76■□□□□ 0.91
VPS53-215ENST00000573028 SIRT1Q96EB6 747 aa20.76■□□□□ 0.91
VPS53-215ENST00000573028 IL25Q9H293 177 aa20.76■□□□□ 0.91
VPS53-215ENST00000573028 SURF6O75683 361 aaKnown RBP20.76■□□□□ 0.91
VPS53-215ENST00000573028 USHBP1Q8N6Y0 703 aa20.76■□□□□ 0.91
VPS53-215ENST00000573028 ITSN1Q15811 1721 aa20.75■□□□□ 0.91
VPS53-215ENST00000573028 GLIPR1L2Q4G1C9 344 aa20.75■□□□□ 0.91
VPS53-215ENST00000573028 RRP9O43818 475 aaKnown RBP20.75■□□□□ 0.91
VPS53-215ENST00000573028 PHAXQ9H814 394 aaKnown RBP20.74■□□□□ 0.91
VPS53-215ENST00000573028 GNAT3A8MTJ3 354 aa20.74■□□□□ 0.91
VPS53-215ENST00000573028 PTMAP06454 111 aaKnown RBP20.74■□□□□ 0.91
VPS53-215ENST00000573028 MCM2P49736 904 aa20.74■□□□□ 0.91
VPS53-215ENST00000573028 RIMS1Q86UR5 1692 aaKnown RBP20.74■□□□□ 0.91
VPS53-215ENST00000573028 BRD1O95696 1058 aa20.74■□□□□ 0.91
VPS53-215ENST00000573028 RBM10P98175 930 aaKnown RBP20.74■□□□□ 0.91
VPS53-215ENST00000573028 CEBPAP49715 358 aaPredicted RBP20.73■□□□□ 0.91
VPS53-215ENST00000573028 VSIG10Q8N0Z9 540 aa20.73■□□□□ 0.91
VPS53-215ENST00000573028 TNRQ92752 1358 aa20.73■□□□□ 0.91
VPS53-215ENST00000573028 MBD3O95983 291 aa20.73■□□□□ 0.91
VPS53-215ENST00000573028 HDGFL1Q5TGJ6 251 aa20.73■□□□□ 0.91
VPS53-215ENST00000573028 FLT4P35916 1363 aa20.73■□□□□ 0.91
VPS53-215ENST00000573028 GADD45BO75293 160 aaPredicted RBP20.72■□□□□ 0.91
VPS53-215ENST00000573028 OFD1O75665 1012 aa20.72■□□□□ 0.91
VPS53-215ENST00000573028 TPM2P07951 284 aa20.72■□□□□ 0.91
VPS53-215ENST00000573028 USP44Q9H0E7 712 aa20.72■□□□□ 0.91
VPS53-215ENST00000573028 TMEM2Q9UHN6 1383 aa20.72■□□□□ 0.91
VPS53-215ENST00000573028 ARHGEF10O15013 1369 aa20.72■□□□□ 0.91
VPS53-215ENST00000573028 SALL3Q9BXA9 1300 aa20.72■□□□□ 0.91
VPS53-215ENST00000573028 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.72■□□□□ 0.91
VPS53-215ENST00000573028 AMOTL2Q9Y2J4 779 aa20.72■□□□□ 0.91
VPS53-215ENST00000573028 IL17REQ8NFR9 667 aa20.71■□□□□ 0.91
VPS53-215ENST00000573028 PEAK1Q9H792 1746 aa20.71■□□□□ 0.91
VPS53-215ENST00000573028 PPP1R42Q7Z4L9 355 aa20.71■□□□□ 0.91
VPS53-215ENST00000573028 TECPR2O15040 1411 aa20.7■□□□□ 0.9
VPS53-215ENST00000573028 CUL4AQ13619 759 aa20.7■□□□□ 0.9
VPS53-215ENST00000573028 NOL7Q9UMY1 257 aaKnown RBP20.7■□□□□ 0.9
VPS53-215ENST00000573028 NRKQ7Z2Y5 1582 aa20.69■□□□□ 0.9
VPS53-215ENST00000573028 AKAP12Q02952 1782 aa20.69■□□□□ 0.9
VPS53-215ENST00000573028 SRGAP3O43295 1099 aa20.69■□□□□ 0.9
VPS53-215ENST00000573028 ANXA1P04083 346 aa20.69■□□□□ 0.9
VPS53-215ENST00000573028 PDLIM2Q96JY6 352 aa20.69■□□□□ 0.9
VPS53-215ENST00000573028 SBNO1A3KN83 1393 aa20.69■□□□□ 0.9
VPS53-215ENST00000573028 OS9Q13438 667 aaPredicted RBP20.68■□□□□ 0.9
VPS53-215ENST00000573028 TSPY26PQ9H489 355 aa20.68■□□□□ 0.9
VPS53-215ENST00000573028 SRCIN1Q9C0H9 1055 aa20.68■□□□□ 0.9
VPS53-215ENST00000573028 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.68■□□□□ 0.9
VPS53-215ENST00000573028 IGSF1Q8N6C5 1336 aa20.68■□□□□ 0.9
VPS53-215ENST00000573028 USP31Q70CQ4 1352 aa20.68■□□□□ 0.9
VPS53-215ENST00000573028 CEP170BQ9Y4F5 1589 aaPredicted RBP20.68■□□□□ 0.9
VPS53-215ENST00000573028 ANAPC15P60006 121 aa20.68■□□□□ 0.9
VPS53-215ENST00000573028 USP48Q86UV5 1035 aa20.68■□□□□ 0.9
VPS53-215ENST00000573028 ARID3AQ99856 593 aa20.68■□□□□ 0.9
VPS53-215ENST00000573028 AGLP35573 1532 aa20.68■□□□□ 0.9
VPS53-215ENST00000573028 CPA1P15085 419 aa20.67■□□□□ 0.9
VPS53-215ENST00000573028 TAF7Q15545 349 aaPredicted RBP20.67■□□□□ 0.9
VPS53-215ENST00000573028 CWC27Q6UX04 472 aaKnown RBP20.67■□□□□ 0.9
VPS53-215ENST00000573028 SPG7Q9UQ90 795 aa20.67■□□□□ 0.9
VPS53-215ENST00000573028 FAM13BQ9NYF5 915 aa20.67■□□□□ 0.9
VPS53-215ENST00000573028 ADAMTS13Q76LX8 1427 aa20.66■□□□□ 0.9
VPS53-215ENST00000573028 SOS1Q07889 1333 aaPredicted RBP20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms