RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 PALLDQ8WX93 1383 aa12.33□□□□□ -0.44
VPS35-206ENST00000565228 ERVV-2B6SEH9 535 aa12.33□□□□□ -0.44
VPS35-206ENST00000565228 SMIM5Q71RC9 77 aa12.33□□□□□ -0.44
VPS35-206ENST00000565228 CCDC146Q8IYE0 955 aa12.33□□□□□ -0.44
VPS35-206ENST00000565228 NFATC2IPQ8NCF5 419 aa12.33□□□□□ -0.44
VPS35-206ENST00000565228 NUDCQ9Y266 331 aa12.33□□□□□ -0.44
VPS35-206ENST00000565228 CASZ1Q86V15 1759 aa12.33□□□□□ -0.44
VPS35-206ENST00000565228 CEMIPQ8WUJ3 1361 aa12.32□□□□□ -0.44
VPS35-206ENST00000565228 MAP3K5Q99683 1374 aa12.32□□□□□ -0.44
VPS35-206ENST00000565228 SENP3-EIF4A1A0A087X0R7 540 aa12.32□□□□□ -0.44
VPS35-206ENST00000565228 KCNQ3O43525 872 aa12.32□□□□□ -0.44
VPS35-206ENST00000565228 SLC39A6Q13433 755 aa12.32□□□□□ -0.44
VPS35-206ENST00000565228 ITPK1Q13572 414 aa12.32□□□□□ -0.44
VPS35-206ENST00000565228 R3HDM1Q15032 1099 aaKnown RBP12.32□□□□□ -0.44
VPS35-206ENST00000565228 AKT1S1Q96B36 256 aa12.32□□□□□ -0.44
VPS35-206ENST00000565228 MYH14Q7Z406 1995 aaKnown RBP12.32□□□□□ -0.44
VPS35-206ENST00000565228 C5P01031 1676 aa12.32□□□□□ -0.44
VPS35-206ENST00000565228 KCPQ6ZWJ8 1503 aa12.32□□□□□ -0.44
VPS35-206ENST00000565228 TJP1Q07157 1748 aa12.31□□□□□ -0.44
VPS35-206ENST00000565228 UBR2Q8IWV8 1755 aa12.31□□□□□ -0.44
VPS35-206ENST00000565228 C1orf141Q5JVX7 400 aa12.31□□□□□ -0.44
VPS35-206ENST00000565228 MCM10Q7L590 875 aa12.31□□□□□ -0.44
VPS35-206ENST00000565228 THUMPD2Q9BTF0 503 aaKnown RBP12.31□□□□□ -0.44
VPS35-206ENST00000565228 SLC52A2Q9HAB3 445 aa12.31□□□□□ -0.44
VPS35-206ENST00000565228 TMOD3Q9NYL9 352 aa12.31□□□□□ -0.44
VPS35-206ENST00000565228 CEP350Q5VT06 3117 aa12.3□□□□□ -0.44
VPS35-206ENST00000565228 LINC00116Q8NCU8 138 aa12.3□□□□□ -0.44
VPS35-206ENST00000565228 GAS2L2Q8NHY3 880 aa12.3□□□□□ -0.44
VPS35-206ENST00000565228 PNISRQ8TF01 805 aaKnown RBP12.3□□□□□ -0.44
VPS35-206ENST00000565228 COL5A3P25940 1745 aaPredicted RBP12.3□□□□□ -0.44
VPS35-206ENST00000565228 GNAT3A8MTJ3 354 aa12.29□□□□□ -0.44
VPS35-206ENST00000565228 HSP90AB1P08238 724 aaKnown RBP12.29□□□□□ -0.44
VPS35-206ENST00000565228 CABP4P57796 275 aa12.29□□□□□ -0.44
VPS35-206ENST00000565228 CCNL1Q9UK58 526 aaPredicted RBP12.29□□□□□ -0.44
VPS35-206ENST00000565228 RRP7AQ9Y3A4 280 aaKnown RBP12.29□□□□□ -0.44
VPS35-206ENST00000565228 C4BP0C0L5 1744 aa12.28□□□□□ -0.44
VPS35-206ENST00000565228 UBR3Q6ZT12 1888 aa12.28□□□□□ -0.44
VPS35-206ENST00000565228 LOC102724428A0A0B4J2F2 783 aa12.28□□□□□ -0.44
VPS35-206ENST00000565228 ANP32CO43423 234 aa12.28□□□□□ -0.44
VPS35-206ENST00000565228 SIK1P57059 783 aa12.28□□□□□ -0.44
VPS35-206ENST00000565228 NFE2L2Q16236 605 aa12.28□□□□□ -0.44
VPS35-206ENST00000565228 SLC15A2Q16348 729 aa12.28□□□□□ -0.44
VPS35-206ENST00000565228 ZNF831Q5JPB2 1677 aa12.27□□□□□ -0.45
VPS35-206ENST00000565228 TMPOP42166 694 aaKnown RBP12.27□□□□□ -0.45
VPS35-206ENST00000565228 TRIM35Q9UPQ4 493 aa12.27□□□□□ -0.45
VPS35-206ENST00000565228 QSER1Q2KHR3 1735 aa12.27□□□□□ -0.45
VPS35-206ENST00000565228 PNPLA7Q6ZV29 1317 aa12.27□□□□□ -0.45
VPS35-206ENST00000565228 CICQ96RK0 1608 aaPredicted RBP12.26□□□□□ -0.45
VPS35-206ENST00000565228 SLC27A3Q5K4L6 730 aa12.26□□□□□ -0.45
VPS35-206ENST00000565228 MIS18AQ9NYP9 233 aa12.26□□□□□ -0.45
VPS35-206ENST00000565228 PRAMEF22A3QJZ6 481 aa12.25□□□□□ -0.45
VPS35-206ENST00000565228 PTCD1O75127 700 aaKnown RBP12.25□□□□□ -0.45
VPS35-206ENST00000565228 MRS2Q9HD23 443 aa12.25□□□□□ -0.45
VPS35-206ENST00000565228 KDM3BQ7LBC6 1761 aa12.25□□□□□ -0.45
VPS35-206ENST00000565228 ATP6V1AP38606 617 aa12.24□□□□□ -0.45
VPS35-206ENST00000565228 SMARCC1Q92922 1105 aaPredicted RBP12.24□□□□□ -0.45
VPS35-206ENST00000565228 RUNDC1Q96C34 613 aa12.24□□□□□ -0.45
VPS35-206ENST00000565228 RBM42Q9BTD8 480 aaKnown RBP12.24□□□□□ -0.45
VPS35-206ENST00000565228 COL24A1Q17RW2 1714 aa12.23□□□□□ -0.45
VPS35-206ENST00000565228 APAF1O14727 1248 aa12.23□□□□□ -0.45
VPS35-206ENST00000565228 RIPK4P57078 832 aa12.23□□□□□ -0.45
VPS35-206ENST00000565228 WDR43Q15061 677 aaKnown RBP eCLIP12.23□□□□□ -0.45
VPS35-206ENST00000565228 COL23A1Q86Y22 540 aaPredicted RBP12.23□□□□□ -0.45
VPS35-206ENST00000565228 DNAJC10Q8IXB1 793 aa12.23□□□□□ -0.45
VPS35-206ENST00000565228 ZNF496Q96IT1 587 aaPredicted RBP12.23□□□□□ -0.45
VPS35-206ENST00000565228 STK32BQ9NY57 414 aa12.23□□□□□ -0.45
VPS35-206ENST00000565228 HTATSF1O43719 755 aaKnown RBP12.22□□□□□ -0.45
VPS35-206ENST00000565228 NEUROD2Q15784 382 aa12.22□□□□□ -0.45
VPS35-206ENST00000565228 NBPF14Q5TI25 921 aa12.22□□□□□ -0.45
VPS35-206ENST00000565228 INTS5Q6P9B9 1019 aaKnown RBP12.22□□□□□ -0.45
VPS35-206ENST00000565228 ZNF790Q6PG37 636 aa12.22□□□□□ -0.45
VPS35-206ENST00000565228 C4AP0C0L4 1744 aa12.21□□□□□ -0.45
VPS35-206ENST00000565228 PTGER2P43116 358 aa12.21□□□□□ -0.45
VPS35-206ENST00000565228 MIER1Q8N108 512 aa12.21□□□□□ -0.45
VPS35-206ENST00000565228 SGIP1Q9BQI5 828 aa12.21□□□□□ -0.45
VPS35-206ENST00000565228 MAPK8IP3Q9UPT6 1336 aa12.2□□□□□ -0.46
VPS35-206ENST00000565228 BTBD11A6QL63 1104 aa12.2□□□□□ -0.46
VPS35-206ENST00000565228 ZBTB7AO95365 584 aa12.2□□□□□ -0.46
VPS35-206ENST00000565228 TEFQ10587 303 aa12.2□□□□□ -0.46
VPS35-206ENST00000565228 HEG1Q9ULI3 1381 aa12.19□□□□□ -0.46
VPS35-206ENST00000565228 CYP19A1P11511 503 aaPredicted RBP12.19□□□□□ -0.46
VPS35-206ENST00000565228 KRT24Q2M2I5 525 aa12.19□□□□□ -0.46
VPS35-206ENST00000565228 USP16Q9Y5T5 823 aa12.19□□□□□ -0.46
VPS35-206ENST00000565228 CRKLP46109 303 aaKnown RBP12.18□□□□□ -0.46
VPS35-206ENST00000565228 PIP4K2AP48426 406 aaPredicted RBP12.18□□□□□ -0.46
VPS35-206ENST00000565228 TAF7Q15545 349 aaPredicted RBP12.18□□□□□ -0.46
VPS35-206ENST00000565228 DIEXFQ68CQ4 756 aaKnown RBP12.18□□□□□ -0.46
VPS35-206ENST00000565228 RTF1Q92541 710 aaKnown RBP12.18□□□□□ -0.46
VPS35-206ENST00000565228 TFCP2L1Q9NZI6 479 aa12.18□□□□□ -0.46
VPS35-206ENST00000565228 ATF5Q9Y2D1 282 aaPredicted RBP12.18□□□□□ -0.46
VPS35-206ENST00000565228 ZBTB1Q9Y2K1 713 aa12.18□□□□□ -0.46
VPS35-206ENST00000565228 CNTNAP4Q9C0A0 1308 aa12.17□□□□□ -0.46
VPS35-206ENST00000565228 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.17□□□□□ -0.46
VPS35-206ENST00000565228 PHF14O94880 888 aa12.17□□□□□ -0.46
VPS35-206ENST00000565228 EIF4A1P60842 406 aaKnown RBP12.17□□□□□ -0.46
VPS35-206ENST00000565228 FAM9BQ8IZU0 186 aa12.17□□□□□ -0.46
VPS35-206ENST00000565228 CNKSR2Q8WXI2 1034 aa12.17□□□□□ -0.46
VPS35-206ENST00000565228 CHL1O00533 1208 aa12.16□□□□□ -0.46
VPS35-206ENST00000565228 GNPATO15228 680 aa12.16□□□□□ -0.46
VPS35-206ENST00000565228 A1BGP04217 495 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms