RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 OFD1O75665 1012 aa16.11■□□□□ 0.17
CLN3-210ENST00000563874 GNAI2P04899 355 aa16.11■□□□□ 0.17
CLN3-210ENST00000563874 ESYT1Q9BSJ8 1104 aa16.11■□□□□ 0.17
CLN3-210ENST00000563874 CRB1P82279 1406 aa16.1■□□□□ 0.17
CLN3-210ENST00000563874 TPM2P07951 284 aa16.1■□□□□ 0.17
CLN3-210ENST00000563874 FAM69CQ0P6D2 419 aa16.1■□□□□ 0.17
CLN3-210ENST00000563874 TPRNQ4KMQ1 711 aa16.1■□□□□ 0.17
CLN3-210ENST00000563874 OSBPL3Q9H4L5 887 aa16.1■□□□□ 0.17
CLN3-210ENST00000563874 CCT4P50991 539 aaKnown RBP16.1■□□□□ 0.17
CLN3-210ENST00000563874 FKBP5Q13451 457 aaPredicted RBP16.1■□□□□ 0.17
CLN3-210ENST00000563874 LRRCC1Q9C099 1032 aa16.1■□□□□ 0.17
CLN3-210ENST00000563874 GDPD2Q9HCC8 539 aa16.1■□□□□ 0.17
CLN3-210ENST00000563874 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.1■□□□□ 0.17
CLN3-210ENST00000563874 R3HCC1Q9Y3T6 440 aaKnown RBP16.1■□□□□ 0.17
CLN3-210ENST00000563874 SETD1AO15047 1707 aaKnown RBP16.1■□□□□ 0.17
CLN3-210ENST00000563874 KIF13AQ9H1H9 1805 aa16.09■□□□□ 0.17
CLN3-210ENST00000563874 MX1P20591 662 aa16.09■□□□□ 0.17
CLN3-210ENST00000563874 PLPPR3Q6T4P5 718 aa16.09■□□□□ 0.17
CLN3-210ENST00000563874 LRSAM1Q6UWE0 723 aa16.09■□□□□ 0.17
CLN3-210ENST00000563874 UNC5CLQ8IV45 518 aa16.09■□□□□ 0.17
CLN3-210ENST00000563874 PDLIM2Q96JY6 352 aa16.09■□□□□ 0.17
CLN3-210ENST00000563874 RBM10P98175 930 aaKnown RBP16.08■□□□□ 0.17
CLN3-210ENST00000563874 STK31Q9BXU1 1019 aa16.08■□□□□ 0.16
CLN3-210ENST00000563874 NOL7Q9UMY1 257 aaKnown RBP16.08■□□□□ 0.16
CLN3-210ENST00000563874 ROBO2Q9HCK4 1378 aa16.08■□□□□ 0.16
CLN3-210ENST00000563874 CHMLP26374 656 aa16.07■□□□□ 0.16
CLN3-210ENST00000563874 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.07■□□□□ 0.16
CLN3-210ENST00000563874 IL1RAPL2Q9NP60 686 aa16.07■□□□□ 0.16
CLN3-210ENST00000563874 MON2Q7Z3U7 1717 aa16.07■□□□□ 0.16
CLN3-210ENST00000563874 ZBTB7CA1YPR0 619 aa16.07■□□□□ 0.16
CLN3-210ENST00000563874 BRD1O95696 1058 aa16.07■□□□□ 0.16
CLN3-210ENST00000563874 MAP4K4O95819 1239 aaPredicted RBP16.07■□□□□ 0.16
CLN3-210ENST00000563874 IL25Q9H293 177 aa16.07■□□□□ 0.16
CLN3-210ENST00000563874 C3P01024 1663 aa16.06■□□□□ 0.16
CLN3-210ENST00000563874 NRXN3Q9Y4C0 1643 aa16.06■□□□□ 0.16
CLN3-210ENST00000563874 FLIIQ13045 1269 aa16.06■□□□□ 0.16
CLN3-210ENST00000563874 SALL3Q9BXA9 1300 aa16.06■□□□□ 0.16
CLN3-210ENST00000563874 MCCP23508 829 aa16.06■□□□□ 0.16
CLN3-210ENST00000563874 LRRFIP2Q9Y608 721 aaKnown RBP16.06■□□□□ 0.16
CLN3-210ENST00000563874 MPNDQ8N594 471 aa16.05■□□□□ 0.16
CLN3-210ENST00000563874 GADD45BO75293 160 aaPredicted RBP16.04■□□□□ 0.16
CLN3-210ENST00000563874 HS1BP3Q53T59 392 aa16.04■□□□□ 0.16
CLN3-210ENST00000563874 ESF1Q9H501 851 aaKnown RBP16.04■□□□□ 0.16
CLN3-210ENST00000563874 MBD3O95983 291 aa16.04■□□□□ 0.16
CLN3-210ENST00000563874 CUL4AQ13619 759 aa16.04■□□□□ 0.16
CLN3-210ENST00000563874 NUTM1Q86Y26 1132 aa16.04■□□□□ 0.16
CLN3-210ENST00000563874 LARP6Q9BRS8 491 aaKnown RBP16.04■□□□□ 0.16
CLN3-210ENST00000563874 OVOS2A0A0J9YW53 1432 aa16.04■□□□□ 0.16
CLN3-210ENST00000563874 OVOS2Q6IE36 1432 aa16.04■□□□□ 0.16
CLN3-210ENST00000563874 NRKQ7Z2Y5 1582 aa16.03■□□□□ 0.16
CLN3-210ENST00000563874 EYA1Q99502 592 aa16.03■□□□□ 0.16
CLN3-210ENST00000563874 ZKSCAN5Q9Y2L8 839 aa16.03■□□□□ 0.16
CLN3-210ENST00000563874 SPATA31D1Q6ZQQ2 1576 aa16.03■□□□□ 0.16
CLN3-210ENST00000563874 MCM2P49736 904 aa16.03■□□□□ 0.16
CLN3-210ENST00000563874 ATP8B2P98198 1209 aa16.03■□□□□ 0.16
CLN3-210ENST00000563874 RIMS1Q86UR5 1692 aaKnown RBP16.03■□□□□ 0.16
CLN3-210ENST00000563874 DTNBO60941 627 aa16.03■□□□□ 0.16
CLN3-210ENST00000563874 GNAI3P08754 354 aa16.03■□□□□ 0.16
CLN3-210ENST00000563874 AMPHP49418 695 aa16.03■□□□□ 0.16
CLN3-210ENST00000563874 PEAK1Q9H792 1746 aa16.03■□□□□ 0.16
CLN3-210ENST00000563874 ITSN1Q15811 1721 aa16.02■□□□□ 0.16
CLN3-210ENST00000563874 FAM13BQ9NYF5 915 aa16.02■□□□□ 0.16
CLN3-210ENST00000563874 ZNF500O60304 480 aaPredicted RBP16.02■□□□□ 0.15
CLN3-210ENST00000563874 PPP6R1Q9UPN7 881 aa16.01■□□□□ 0.15
CLN3-210ENST00000563874 USP6P35125 1406 aa16.01■□□□□ 0.15
CLN3-210ENST00000563874 PTMAP06454 111 aaKnown RBP16.01■□□□□ 0.15
CLN3-210ENST00000563874 TSPY26PQ9H489 355 aa16.01■□□□□ 0.15
CLN3-210ENST00000563874 AKAP12Q02952 1782 aa16.01■□□□□ 0.15
CLN3-210ENST00000563874 CCDC30Q5VVM6 783 aa16■□□□□ 0.15
CLN3-210ENST00000563874 NUTM2GQ5VZR2 741 aa16■□□□□ 0.15
CLN3-210ENST00000563874 SLC26A8Q96RN1 970 aa16■□□□□ 0.15
CLN3-210ENST00000563874 USP48Q86UV5 1035 aa16■□□□□ 0.15
CLN3-210ENST00000563874 SIRT1Q96EB6 747 aa16■□□□□ 0.15
CLN3-210ENST00000563874 PLEKHG3A1L390 1219 aa16■□□□□ 0.15
CLN3-210ENST00000563874 ANAPC15P60006 121 aa16■□□□□ 0.15
CLN3-210ENST00000563874 INTS4Q96HW7 963 aaKnown RBP16■□□□□ 0.15
CLN3-210ENST00000563874 USP44Q9H0E7 712 aa16■□□□□ 0.15
CLN3-210ENST00000563874 TECPR2O15040 1411 aa15.99■□□□□ 0.15
CLN3-210ENST00000563874 LTV1Q96GA3 475 aaPredicted RBP15.99■□□□□ 0.15
CLN3-210ENST00000563874 ARID3AQ99856 593 aa15.99■□□□□ 0.15
CLN3-210ENST00000563874 PDCL3Q9H2J4 239 aa15.99■□□□□ 0.15
CLN3-210ENST00000563874 UQCRHLA0A096LP55 91 aa15.99■□□□□ 0.15
CLN3-210ENST00000563874 UQCRHP07919 91 aa15.99■□□□□ 0.15
CLN3-210ENST00000563874 UBTFL1P0CB47 393 aaPredicted RBP15.99■□□□□ 0.15
CLN3-210ENST00000563874 HDGFP51858 240 aaKnown RBP15.99■□□□□ 0.15
CLN3-210ENST00000563874 CCDC39Q9UFE4 941 aa15.99■□□□□ 0.15
CLN3-210ENST00000563874 ARHGEF10O15013 1369 aa15.99■□□□□ 0.15
CLN3-210ENST00000563874 PHAXQ9H814 394 aaKnown RBP15.98■□□□□ 0.15
CLN3-210ENST00000563874 TSPOAP1O95153 1857 aa15.98■□□□□ 0.15
CLN3-210ENST00000563874 SURF6O75683 361 aaKnown RBP15.98■□□□□ 0.15
CLN3-210ENST00000563874 STAP2Q9UGK3 403 aa15.98■□□□□ 0.15
CLN3-210ENST00000563874 NGDNQ8NEJ9 315 aaKnown RBP15.98■□□□□ 0.15
CLN3-210ENST00000563874 TAF7LQ5H9L4 462 aa15.97■□□□□ 0.15
CLN3-210ENST00000563874 CEP170BQ9Y4F5 1589 aaPredicted RBP15.97■□□□□ 0.15
CLN3-210ENST00000563874 SRCIN1Q9C0H9 1055 aa15.97■□□□□ 0.15
CLN3-210ENST00000563874 USP31Q70CQ4 1352 aa15.97■□□□□ 0.15
CLN3-210ENST00000563874 FLT4P35916 1363 aa15.96■□□□□ 0.15
CLN3-210ENST00000563874 GNAT3A8MTJ3 354 aa15.96■□□□□ 0.15
CLN3-210ENST00000563874 PPP1R42Q7Z4L9 355 aa15.96■□□□□ 0.15
CLN3-210ENST00000563874 IL17REQ8NFR9 667 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms