RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 CEMIPQ8WUJ3 1361 aa22.52■■□□□ 1.19
SHOX-204ENST00000554971 HSP90AB1P08238 724 aaKnown RBP22.51■■□□□ 1.19
SHOX-204ENST00000554971 DCTN1Q14203 1278 aa22.51■■□□□ 1.19
SHOX-204ENST00000554971 RNMTO43148 476 aaKnown RBP22.51■■□□□ 1.19
SHOX-204ENST00000554971 RIPK4P57078 832 aa22.5■■□□□ 1.19
SHOX-204ENST00000554971 NEUROD2Q15784 382 aa22.5■■□□□ 1.19
SHOX-204ENST00000554971 MCM10Q7L590 875 aa22.5■■□□□ 1.19
SHOX-204ENST00000554971 UPF1Q92900 1129 aaKnown RBP eCLIP22.5■■□□□ 1.19
SHOX-204ENST00000554971 SYTL4Q96C24 671 aaPredicted RBP22.5■■□□□ 1.19
SHOX-204ENST00000554971 BCL11BQ9C0K0 894 aaPredicted RBP22.49■■□□□ 1.19
SHOX-204ENST00000554971 TRIM35Q9UPQ4 493 aa22.49■■□□□ 1.19
SHOX-204ENST00000554971 ERVV-2B6SEH9 535 aa22.48■■□□□ 1.19
SHOX-204ENST00000554971 PIGBQ92521 554 aa22.47■■□□□ 1.19
SHOX-204ENST00000554971 NFATC2IPQ8NCF5 419 aa22.47■■□□□ 1.19
SHOX-204ENST00000554971 THUMPD2Q9BTF0 503 aaKnown RBP22.47■■□□□ 1.19
SHOX-204ENST00000554971 HTATSF1O43719 755 aaKnown RBP22.46■■□□□ 1.19
SHOX-204ENST00000554971 SRCAPQ6ZRS2 3230 aa22.45■■□□□ 1.19
SHOX-204ENST00000554971 ZNF521Q96K83 1311 aa22.45■■□□□ 1.19
SHOX-204ENST00000554971 CDCA7LQ96GN5 454 aa22.45■■□□□ 1.18
SHOX-204ENST00000554971 SLC52A2Q9HAB3 445 aa22.45■■□□□ 1.18
SHOX-204ENST00000554971 SALL2Q9Y467 1007 aaPredicted RBP22.45■■□□□ 1.18
SHOX-204ENST00000554971 PAPPAQ13219 1627 aa22.45■■□□□ 1.18
SHOX-204ENST00000554971 RTF1Q92541 710 aaKnown RBP22.44■■□□□ 1.18
SHOX-204ENST00000554971 TMOD3Q9NYL9 352 aa22.44■■□□□ 1.18
SHOX-204ENST00000554971 LY75O60449 1722 aa22.44■■□□□ 1.18
SHOX-204ENST00000554971 RGPD3A6NKT7 1758 aaPredicted RBP22.43■■□□□ 1.18
SHOX-204ENST00000554971 RGPD4Q7Z3J3 1758 aa22.43■■□□□ 1.18
SHOX-204ENST00000554971 CABP4P57796 275 aa22.43■■□□□ 1.18
SHOX-204ENST00000554971 GOLGA2Q08379 1002 aa22.41■■□□□ 1.18
SHOX-204ENST00000554971 APBA3O96018 575 aa22.41■■□□□ 1.18
SHOX-204ENST00000554971 DEFB132Q7Z7B7 95 aa22.41■■□□□ 1.18
SHOX-204ENST00000554971 ASAP1Q9ULH1 1129 aa22.41■■□□□ 1.18
SHOX-204ENST00000554971 UBR2Q8IWV8 1755 aa22.4■■□□□ 1.18
SHOX-204ENST00000554971 CCDC125Q86Z20 511 aa22.4■■□□□ 1.18
SHOX-204ENST00000554971 EXOC6Q8TAG9 804 aa22.4■■□□□ 1.18
SHOX-204ENST00000554971 KDM3BQ7LBC6 1761 aa22.39■■□□□ 1.17
SHOX-204ENST00000554971 TEFQ10587 303 aa22.39■■□□□ 1.17
SHOX-204ENST00000554971 ATG3Q9NT62 314 aa22.39■■□□□ 1.17
SHOX-204ENST00000554971 LMOD3Q0VAK6 560 aa22.38■■□□□ 1.17
SHOX-204ENST00000554971 TCERG1O14776 1098 aaKnown RBP22.37■■□□□ 1.17
SHOX-204ENST00000554971 EN1Q05925 392 aaPredicted RBP22.37■■□□□ 1.17
SHOX-204ENST00000554971 SLC39A6Q13433 755 aa22.37■■□□□ 1.17
SHOX-204ENST00000554971 CCDC27Q2M243 656 aa22.37■■□□□ 1.17
SHOX-204ENST00000554971 DUSP27Q5VZP5 1158 aa22.37■■□□□ 1.17
SHOX-204ENST00000554971 WWC1Q8IX03 1113 aa22.37■■□□□ 1.17
SHOX-204ENST00000554971 PROM2Q8N271 834 aa22.37■■□□□ 1.17
SHOX-204ENST00000554971 PLSCR1O15162 318 aa22.37■■□□□ 1.17
SHOX-204ENST00000554971 TRMT2AQ8IZ69 625 aaKnown RBP22.37■■□□□ 1.17
SHOX-204ENST00000554971 RREB1Q92766 1687 aa22.36■■□□□ 1.17
SHOX-204ENST00000554971 SOCS7O14512 581 aa22.36■■□□□ 1.17
SHOX-204ENST00000554971 NCBP3Q53F19 620 aaKnown RBP22.36■■□□□ 1.17
SHOX-204ENST00000554971 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.36■■□□□ 1.17
SHOX-204ENST00000554971 CAMKK2Q96RR4 588 aa22.36■■□□□ 1.17
SHOX-204ENST00000554971 PALLDQ8WX93 1383 aa22.36■■□□□ 1.17
SHOX-204ENST00000554971 KCPQ6ZWJ8 1503 aa22.36■■□□□ 1.17
SHOX-204ENST00000554971 MSH5O43196 834 aa22.35■■□□□ 1.17
SHOX-204ENST00000554971 MIS18AQ9NYP9 233 aa22.35■■□□□ 1.17
SHOX-204ENST00000554971 SLFN5Q08AF3 891 aa22.35■■□□□ 1.17
SHOX-204ENST00000554971 SF3B2Q13435 895 aaKnown RBP22.35■■□□□ 1.17
SHOX-204ENST00000554971 KCNQ3O43525 872 aa22.34■■□□□ 1.17
SHOX-204ENST00000554971 MS4A1P11836 297 aa22.34■■□□□ 1.17
SHOX-204ENST00000554971 TAF7Q15545 349 aaPredicted RBP22.34■■□□□ 1.17
SHOX-204ENST00000554971 EZH2Q15910 746 aaKnown RBP22.34■■□□□ 1.17
SHOX-204ENST00000554971 TAF1LQ8IZX4 1826 aa22.34■■□□□ 1.17
SHOX-204ENST00000554971 SLC4A9Q96Q91 983 aa22.33■■□□□ 1.17
SHOX-204ENST00000554971 BTBD11A6QL63 1104 aa22.33■■□□□ 1.16
SHOX-204ENST00000554971 BAG6P46379 1132 aa22.33■■□□□ 1.16
SHOX-204ENST00000554971 NUP188Q5SRE5 1749 aa22.32■■□□□ 1.16
SHOX-204ENST00000554971 KCNQ4P56696 695 aa22.32■■□□□ 1.16
SHOX-204ENST00000554971 ZNF790Q6PG37 636 aa22.32■■□□□ 1.16
SHOX-204ENST00000554971 LRRC4BQ9NT99 713 aa22.32■■□□□ 1.16
SHOX-204ENST00000554971 ZNF831Q5JPB2 1677 aa22.31■■□□□ 1.16
SHOX-204ENST00000554971 E9PSI1 815 aa22.3■■□□□ 1.16
SHOX-204ENST00000554971 TXNRD1Q16881 649 aa22.3■■□□□ 1.16
SHOX-204ENST00000554971 TJP1Q07157 1748 aa22.3■■□□□ 1.16
SHOX-204ENST00000554971 PTCD1O75127 700 aaKnown RBP22.29■■□□□ 1.16
SHOX-204ENST00000554971 ZNF853P0CG23 659 aa22.29■■□□□ 1.16
SHOX-204ENST00000554971 SMARCC1Q92922 1105 aaPredicted RBP22.29■■□□□ 1.16
SHOX-204ENST00000554971 C5P01031 1676 aa22.29■■□□□ 1.16
SHOX-204ENST00000554971 CICQ96RK0 1608 aaPredicted RBP22.29■■□□□ 1.16
SHOX-204ENST00000554971 LOC102724428A0A0B4J2F2 783 aa22.29■■□□□ 1.16
SHOX-204ENST00000554971 SIK1P57059 783 aa22.29■■□□□ 1.16
SHOX-204ENST00000554971 ERICH6Q7L0X2 663 aa22.29■■□□□ 1.16
SHOX-204ENST00000554971 SPINK5Q9NQ38 1064 aaPredicted RBP22.29■■□□□ 1.16
SHOX-204ENST00000554971 COL5A3P25940 1745 aaPredicted RBP22.28■■□□□ 1.16
SHOX-204ENST00000554971 CHL1O00533 1208 aa22.28■■□□□ 1.16
SHOX-204ENST00000554971 ZNF496Q96IT1 587 aaPredicted RBP22.28■■□□□ 1.16
SHOX-204ENST00000554971 MYH14Q7Z406 1995 aaKnown RBP22.28■■□□□ 1.16
SHOX-204ENST00000554971 CFAP44Q96MT7 982 aa22.27■■□□□ 1.16
SHOX-204ENST00000554971 ITPK1Q13572 414 aa22.25■■□□□ 1.15
SHOX-204ENST00000554971 TTC5Q8N0Z6 440 aa22.25■■□□□ 1.15
SHOX-204ENST00000554971 RBM42Q9BTD8 480 aaKnown RBP22.25■■□□□ 1.15
SHOX-204ENST00000554971 IFT57Q9NWB7 429 aa22.25■■□□□ 1.15
SHOX-204ENST00000554971 TSPYL4Q9UJ04 414 aa22.25■■□□□ 1.15
SHOX-204ENST00000554971 CCNL1Q9UK58 526 aaPredicted RBP22.25■■□□□ 1.15
SHOX-204ENST00000554971 LAS1LQ9Y4W2 734 aaKnown RBP22.25■■□□□ 1.15
SHOX-204ENST00000554971 WDR63Q8IWG1 891 aa22.25■■□□□ 1.15
SHOX-204ENST00000554971 MBIPQ9NS73 344 aa22.25■■□□□ 1.15
SHOX-204ENST00000554971 CRBNQ96SW2 442 aa22.24■■□□□ 1.15
SHOX-204ENST00000554971 BABAM1Q9NWV8 329 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms