RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SDSP20132 328 aa6.7□□□□□ -1.34
LIMA1-212ENST00000552491 RABEP1Q15276 862 aa6.7□□□□□ -1.34
LIMA1-212ENST00000552491 ZDHHC9Q9Y397 364 aa6.7□□□□□ -1.34
LIMA1-212ENST00000552491 APBB1O00213 710 aa6.69□□□□□ -1.34
LIMA1-212ENST00000552491 EMP3P54852 163 aa6.69□□□□□ -1.34
LIMA1-212ENST00000552491 CALD1Q05682 793 aaKnown RBP6.69□□□□□ -1.34
LIMA1-212ENST00000552491 CAVIN1Q6NZI2 390 aaKnown RBP6.69□□□□□ -1.34
LIMA1-212ENST00000552491 API5Q9BZZ5 524 aaKnown RBP6.69□□□□□ -1.34
LIMA1-212ENST00000552491 ATP7BP35670 1465 aa6.69□□□□□ -1.34
LIMA1-212ENST00000552491 REREQ9P2R6 1566 aa6.69□□□□□ -1.34
LIMA1-212ENST00000552491 CCDC173Q0VFZ6 552 aa6.69□□□□□ -1.34
LIMA1-212ENST00000552491 HSP90AA2PQ14568 343 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-212ENST00000552491 INTS3Q68E01 1043 aaKnown RBP6.69□□□□□ -1.34
LIMA1-212ENST00000552491 AEBP1Q8IUX7 1158 aa6.69□□□□□ -1.34
LIMA1-212ENST00000552491 ANKRD44Q8N8A2 993 aa6.69□□□□□ -1.34
LIMA1-212ENST00000552491 RBSNQ9H1K0 784 aa6.69□□□□□ -1.34
LIMA1-212ENST00000552491 RBM27Q9P2N5 1060 aaKnown RBP6.69□□□□□ -1.34
LIMA1-212ENST00000552491 IBTKQ9P2D0 1353 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-212ENST00000552491 CPSF1Q10570 1443 aaKnown RBP6.69□□□□□ -1.34
LIMA1-212ENST00000552491 CPS1P31327 1500 aa6.69□□□□□ -1.34
LIMA1-212ENST00000552491 RICTORQ6R327 1708 aa6.69□□□□□ -1.34
LIMA1-212ENST00000552491 CDK12Q9NYV4 1490 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-212ENST00000552491 GOLGA6L22H0YM25 854 aa6.68□□□□□ -1.34
LIMA1-212ENST00000552491 ZNF445P59923 1031 aa6.68□□□□□ -1.34
LIMA1-212ENST00000552491 ZSCAN23Q3MJ62 389 aa6.68□□□□□ -1.34
LIMA1-212ENST00000552491 CEP85Q6P2H3 762 aa6.68□□□□□ -1.34
LIMA1-212ENST00000552491 GPT2Q8TD30 523 aa6.68□□□□□ -1.34
LIMA1-212ENST00000552491 MEIS3Q99687 375 aa6.68□□□□□ -1.34
LIMA1-212ENST00000552491 NSFL1CQ9UNZ2 370 aaKnown RBP6.68□□□□□ -1.34
LIMA1-212ENST00000552491 MSH6P52701 1360 aa6.68□□□□□ -1.34
LIMA1-212ENST00000552491 RRP9O43818 475 aaKnown RBP6.68□□□□□ -1.34
LIMA1-212ENST00000552491 NCLP19338 710 aaKnown RBP6.68□□□□□ -1.34
LIMA1-212ENST00000552491 PRIM1P49642 420 aaKnown RBP6.68□□□□□ -1.34
LIMA1-212ENST00000552491 SETD1AO15047 1707 aaKnown RBP6.68□□□□□ -1.34
LIMA1-212ENST00000552491 RTL1A6NKG5 1358 aa6.67□□□□□ -1.34
LIMA1-212ENST00000552491 KIF13AQ9H1H9 1805 aa6.67□□□□□ -1.34
LIMA1-212ENST00000552491 KIAA1211Q6ZU35 1233 aa6.67□□□□□ -1.34
LIMA1-212ENST00000552491 ZSCAN30Q86W11 494 aa6.67□□□□□ -1.34
LIMA1-212ENST00000552491 FAM212AQ96EL1 285 aa6.67□□□□□ -1.34
LIMA1-212ENST00000552491 NEO1Q92859 1461 aa6.67□□□□□ -1.34
LIMA1-212ENST00000552491 KIF24Q5T7B8 1368 aa6.67□□□□□ -1.34
LIMA1-212ENST00000552491 FAM205CA6NFA0 338 aa6.67□□□□□ -1.34
LIMA1-212ENST00000552491 PRPF40AO75400 957 aaKnown RBP6.67□□□□□ -1.34
LIMA1-212ENST00000552491 NUCB2P80303 420 aa6.67□□□□□ -1.34
LIMA1-212ENST00000552491 MCM10Q7L590 875 aa6.67□□□□□ -1.34
LIMA1-212ENST00000552491 HS3ST6Q96QI5 342 aa6.67□□□□□ -1.34
LIMA1-212ENST00000552491 EDC4Q6P2E9 1401 aaKnown RBP6.67□□□□□ -1.34
LIMA1-212ENST00000552491 AATKQ6ZMQ8 1374 aa6.66□□□□□ -1.34
LIMA1-212ENST00000552491 GLIPR1L2Q4G1C9 344 aa6.66□□□□□ -1.34
LIMA1-212ENST00000552491 TMEM63CQ9P1W3 806 aa6.66□□□□□ -1.34
LIMA1-212ENST00000552491 DLC1Q96QB1 1528 aa6.66□□□□□ -1.34
LIMA1-212ENST00000552491 WASLO00401 505 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-212ENST00000552491 FOXD4L5Q5VV16 416 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-212ENST00000552491 TSHZ3Q63HK5 1081 aa6.66□□□□□ -1.34
LIMA1-212ENST00000552491 RPAP2Q8IXW5 612 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-212ENST00000552491 VSIG10Q8N0Z9 540 aa6.66□□□□□ -1.34
LIMA1-212ENST00000552491 FOXD4L4Q8WXT5 416 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-212ENST00000552491 PDLIM2Q96JY6 352 aa6.66□□□□□ -1.34
LIMA1-212ENST00000552491 CHL1O00533 1208 aa6.65□□□□□ -1.34
LIMA1-212ENST00000552491 OFD1O75665 1012 aa6.65□□□□□ -1.34
LIMA1-212ENST00000552491 PYGBP11216 843 aa6.65□□□□□ -1.34
LIMA1-212ENST00000552491 LMOD3Q0VAK6 560 aa6.65□□□□□ -1.34
LIMA1-212ENST00000552491 SULT6B1Q6IMI4 303 aa6.65□□□□□ -1.34
LIMA1-212ENST00000552491 G2E3Q7L622 706 aa6.65□□□□□ -1.34
LIMA1-212ENST00000552491 MIS18AQ9NYP9 233 aa6.65□□□□□ -1.34
LIMA1-212ENST00000552491 PCDHB8Q9UN66 801 aa6.65□□□□□ -1.34
LIMA1-212ENST00000552491 F6X3S4 739 aa6.65□□□□□ -1.35
LIMA1-212ENST00000552491 EIF4A2Q14240 407 aaKnown RBP6.65□□□□□ -1.35
LIMA1-212ENST00000552491 ANP32BQ92688 251 aaKnown RBP6.65□□□□□ -1.35
LIMA1-212ENST00000552491 NUDT16Q96DE0 195 aaKnown RBP6.65□□□□□ -1.35
LIMA1-212ENST00000552491 A2ML1A8K2U0 1454 aa6.65□□□□□ -1.35
LIMA1-212ENST00000552491 SYCE3A1L190 88 aa6.64□□□□□ -1.35
LIMA1-212ENST00000552491 TPM2P07951 284 aa6.64□□□□□ -1.35
LIMA1-212ENST00000552491 MON2Q7Z3U7 1717 aa6.64□□□□□ -1.35
LIMA1-212ENST00000552491 TXNDC2Q86VQ3 553 aa6.64□□□□□ -1.35
LIMA1-212ENST00000552491 COG3Q96JB2 828 aa6.64□□□□□ -1.35
LIMA1-212ENST00000552491 PALD1Q9ULE6 856 aa6.64□□□□□ -1.35
LIMA1-212ENST00000552491 METP08581 1390 aa6.64□□□□□ -1.35
LIMA1-212ENST00000552491 PRR36Q9H6K5 1346 aa6.64□□□□□ -1.35
LIMA1-212ENST00000552491 DIP2BQ9P265 1576 aa6.64□□□□□ -1.35
LIMA1-212ENST00000552491 PDE1AP54750 535 aa6.64□□□□□ -1.35
LIMA1-212ENST00000552491 XPCQ01831 940 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-212ENST00000552491 CWC22Q9HCG8 908 aaKnown RBP6.64□□□□□ -1.35
LIMA1-212ENST00000552491 C3P01024 1663 aa6.64□□□□□ -1.35
LIMA1-212ENST00000552491 NRXN3Q9Y4C0 1643 aa6.64□□□□□ -1.35
LIMA1-212ENST00000552491 TUBGCP6Q96RT7 1819 aa6.64□□□□□ -1.35
LIMA1-212ENST00000552491 ERC2O15083 957 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 FOXO3O43524 673 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 PDCD7Q8N8D1 485 aaKnown RBP6.63□□□□□ -1.35
LIMA1-212ENST00000552491 TMX3Q96JJ7 454 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 ZMYND15Q9H091 742 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 NOL7Q9UMY1 257 aaKnown RBP6.63□□□□□ -1.35
LIMA1-212ENST00000552491 TCHHQ07283 1943 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 SALL3Q9BXA9 1300 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 REC8O95072 547 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 MSNP26038 577 aaKnown RBP6.63□□□□□ -1.35
LIMA1-212ENST00000552491 NEK4P51957 841 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 HSP90AB2PQ58FF8 381 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 OSBPL3Q9H4L5 887 aa6.63□□□□□ -1.35
LIMA1-212ENST00000552491 EXOC6BQ9Y2D4 811 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms