RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 C5P01031 1676 aa25.41■■□□□ 1.66
DDX55-211ENST00000544429 ADAMTS8Q9UP79 889 aa25.4■■□□□ 1.66
DDX55-211ENST00000544429 CICQ96RK0 1608 aaPredicted RBP25.39■■□□□ 1.66
DDX55-211ENST00000544429 HTATSF1O43719 755 aaKnown RBP25.39■■□□□ 1.66
DDX55-211ENST00000544429 WDR43Q15061 677 aaKnown RBP eCLIP25.38■■□□□ 1.65
DDX55-211ENST00000544429 UBR2Q8IWV8 1755 aa25.38■■□□□ 1.65
DDX55-211ENST00000544429 QSER1Q2KHR3 1735 aa25.37■■□□□ 1.65
DDX55-211ENST00000544429 NFE2L2Q16236 605 aa25.37■■□□□ 1.65
DDX55-211ENST00000544429 CCNL1Q9UK58 526 aaPredicted RBP25.37■■□□□ 1.65
DDX55-211ENST00000544429 KCNQ4P56696 695 aa25.36■■□□□ 1.65
DDX55-211ENST00000544429 NBPF14Q5TI25 921 aa25.36■■□□□ 1.65
DDX55-211ENST00000544429 LOC102724428A0A0B4J2F2 783 aa25.35■■□□□ 1.65
DDX55-211ENST00000544429 NEFMP07197 916 aa25.35■■□□□ 1.65
DDX55-211ENST00000544429 SIK1P57059 783 aa25.35■■□□□ 1.65
DDX55-211ENST00000544429 AKT1S1Q96B36 256 aa25.35■■□□□ 1.65
DDX55-211ENST00000544429 TUBGCP6Q96RT7 1819 aa25.35■■□□□ 1.65
DDX55-211ENST00000544429 CASZ1Q86V15 1759 aa25.34■■□□□ 1.65
DDX55-211ENST00000544429 R3HDM1Q15032 1099 aaKnown RBP25.34■■□□□ 1.65
DDX55-211ENST00000544429 PNISRQ8TF01 805 aaKnown RBP25.34■■□□□ 1.65
DDX55-211ENST00000544429 COL5A3P25940 1745 aaPredicted RBP25.34■■□□□ 1.65
DDX55-211ENST00000544429 MAPK8IP3Q9UPT6 1336 aa25.34■■□□□ 1.65
DDX55-211ENST00000544429 KCPQ6ZWJ8 1503 aa25.33■■□□□ 1.65
DDX55-211ENST00000544429 SLC15A2Q16348 729 aa25.33■■□□□ 1.65
DDX55-211ENST00000544429 RUNDC1Q96C34 613 aa25.33■■□□□ 1.65
DDX55-211ENST00000544429 SLC4A9Q96Q91 983 aa25.33■■□□□ 1.65
DDX55-211ENST00000544429 C4BP0C0L5 1744 aa25.32■■□□□ 1.64
DDX55-211ENST00000544429 PSDA5PKW4 1024 aaPredicted RBP25.32■■□□□ 1.64
DDX55-211ENST00000544429 ZNF827Q17R98 1081 aa25.32■■□□□ 1.64
DDX55-211ENST00000544429 TJP1Q07157 1748 aa25.31■■□□□ 1.64
DDX55-211ENST00000544429 TMPOP42166 694 aaKnown RBP25.3■■□□□ 1.64
DDX55-211ENST00000544429 MCM10Q7L590 875 aa25.3■■□□□ 1.64
DDX55-211ENST00000544429 CCDC146Q8IYE0 955 aa25.3■■□□□ 1.64
DDX55-211ENST00000544429 RTF1Q92541 710 aaKnown RBP25.3■■□□□ 1.64
DDX55-211ENST00000544429 MRS2Q9HD23 443 aa25.3■■□□□ 1.64
DDX55-211ENST00000544429 STK32BQ9NY57 414 aa25.3■■□□□ 1.64
DDX55-211ENST00000544429 HMGB2P26583 209 aaKnown RBP25.29■■□□□ 1.64
DDX55-211ENST00000544429 TEFQ10587 303 aa25.29■■□□□ 1.64
DDX55-211ENST00000544429 ITPK1Q13572 414 aa25.29■■□□□ 1.64
DDX55-211ENST00000544429 DCTN1Q14203 1278 aa25.29■■□□□ 1.64
DDX55-211ENST00000544429 SRCAPQ6ZRS2 3230 aa25.28■■□□□ 1.64
DDX55-211ENST00000544429 UBR3Q6ZT12 1888 aa25.28■■□□□ 1.64
DDX55-211ENST00000544429 SLC39A6Q13433 755 aa25.27■■□□□ 1.64
DDX55-211ENST00000544429 MYH14Q7Z406 1995 aaKnown RBP25.26■■□□□ 1.63
DDX55-211ENST00000544429 ATP6V1AP38606 617 aa25.26■■□□□ 1.63
DDX55-211ENST00000544429 LINC00116Q8NCU8 138 aa25.26■■□□□ 1.63
DDX55-211ENST00000544429 RIPK4P57078 832 aa25.25■■□□□ 1.63
DDX55-211ENST00000544429 KDM3BQ7LBC6 1761 aa25.25■■□□□ 1.63
DDX55-211ENST00000544429 PTCD1O75127 700 aaKnown RBP25.24■■□□□ 1.63
DDX55-211ENST00000544429 ZNF790Q6PG37 636 aa25.24■■□□□ 1.63
DDX55-211ENST00000544429 RBM42Q9BTD8 480 aaKnown RBP25.24■■□□□ 1.63
DDX55-211ENST00000544429 PDGFDQ9GZP0 370 aaPredicted RBP25.23■■□□□ 1.63
DDX55-211ENST00000544429 LRP5O75197 1615 aa25.23■■□□□ 1.63
DDX55-211ENST00000544429 PNPLA7Q6ZV29 1317 aa25.22■■□□□ 1.63
DDX55-211ENST00000544429 TRIM35Q9UPQ4 493 aa25.22■■□□□ 1.63
DDX55-211ENST00000544429 TAF7Q15545 349 aaPredicted RBP25.21■■□□□ 1.63
DDX55-211ENST00000544429 VSIG10Q8N0Z9 540 aa25.21■■□□□ 1.63
DDX55-211ENST00000544429 THUMPD2Q9BTF0 503 aaKnown RBP25.21■■□□□ 1.63
DDX55-211ENST00000544429 RRP7AQ9Y3A4 280 aaKnown RBP25.21■■□□□ 1.63
DDX55-211ENST00000544429 COL24A1Q17RW2 1714 aa25.2■■□□□ 1.63
DDX55-211ENST00000544429 BTBD11A6QL63 1104 aa25.2■■□□□ 1.62
DDX55-211ENST00000544429 LMOD3Q0VAK6 560 aa25.2■■□□□ 1.62
DDX55-211ENST00000544429 ZNF496Q96IT1 587 aaPredicted RBP25.2■■□□□ 1.62
DDX55-211ENST00000544429 CNTNAP4Q9C0A0 1308 aa25.19■■□□□ 1.62
DDX55-211ENST00000544429 APAF1O14727 1248 aa25.19■■□□□ 1.62
DDX55-211ENST00000544429 RC3H1Q5TC82 1133 aaKnown RBP25.19■■□□□ 1.62
DDX55-211ENST00000544429 AMIGO3Q86WK7 504 aa25.19■■□□□ 1.62
DDX55-211ENST00000544429 KCNQ3O43525 872 aa25.18■■□□□ 1.62
DDX55-211ENST00000544429 TFCP2L1Q9NZI6 479 aa25.18■■□□□ 1.62
DDX55-211ENST00000544429 HEG1Q9ULI3 1381 aa25.18■■□□□ 1.62
DDX55-211ENST00000544429 DIEXFQ68CQ4 756 aaKnown RBP25.17■■□□□ 1.62
DDX55-211ENST00000544429 TTC5Q8N0Z6 440 aa25.17■■□□□ 1.62
DDX55-211ENST00000544429 CCER2I3L3R5 266 aa25.15■■□□□ 1.62
DDX55-211ENST00000544429 NEUROD2Q15784 382 aa25.15■■□□□ 1.62
DDX55-211ENST00000544429 DNAJC10Q8IXB1 793 aa25.15■■□□□ 1.62
DDX55-211ENST00000544429 NCBP3Q53F19 620 aaKnown RBP25.14■■□□□ 1.62
DDX55-211ENST00000544429 AK7Q96M32 723 aa25.14■■□□□ 1.62
DDX55-211ENST00000544429 FMNL2Q96PY5 1086 aa25.14■■□□□ 1.62
DDX55-211ENST00000544429 BABAM1Q9NWV8 329 aa25.14■■□□□ 1.62
DDX55-211ENST00000544429 CYP19A1P11511 503 aaPredicted RBP25.13■■□□□ 1.61
DDX55-211ENST00000544429 SSFA2P28290 1259 aa25.13■■□□□ 1.61
DDX55-211ENST00000544429 COL23A1Q86Y22 540 aaPredicted RBP25.13■■□□□ 1.61
DDX55-211ENST00000544429 CRKLP46109 303 aaKnown RBP25.12■■□□□ 1.61
DDX55-211ENST00000544429 INTS5Q6P9B9 1019 aaKnown RBP25.12■■□□□ 1.61
DDX55-211ENST00000544429 FLAD1Q8NFF5 587 aa25.12■■□□□ 1.61
DDX55-211ENST00000544429 SLC16A10Q8TF71 515 aa25.12■■□□□ 1.61
DDX55-211ENST00000544429 MIS18AQ9NYP9 233 aa25.12■■□□□ 1.61
DDX55-211ENST00000544429 C4AP0C0L4 1744 aa25.11■■□□□ 1.61
DDX55-211ENST00000544429 GNPATO15228 680 aa25.1■■□□□ 1.61
DDX55-211ENST00000544429 RPS6KA4O75676 772 aa25.1■■□□□ 1.61
DDX55-211ENST00000544429 CCDC27Q2M243 656 aa25.1■■□□□ 1.61
DDX55-211ENST00000544429 LAMB4A4D0S4 1761 aa25.1■■□□□ 1.61
DDX55-211ENST00000544429 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.09■■□□□ 1.61
DDX55-211ENST00000544429 SMIM5Q71RC9 77 aa25.09■■□□□ 1.61
DDX55-211ENST00000544429 SGIP1Q9BQI5 828 aa25.09■■□□□ 1.61
DDX55-211ENST00000544429 TEX13AQ9BXU3 409 aaPredicted RBP25.09■■□□□ 1.61
DDX55-211ENST00000544429 MTFR1LQ9H019 292 aa25.09■■□□□ 1.61
DDX55-211ENST00000544429 CHL1O00533 1208 aa25.08■■□□□ 1.61
DDX55-211ENST00000544429 EIF4A1P60842 406 aaKnown RBP25.08■■□□□ 1.61
DDX55-211ENST00000544429 FAM9BQ8IZU0 186 aa25.08■■□□□ 1.61
DDX55-211ENST00000544429 CCDC87Q9NVE4 849 aa25.08■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms