RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 SBF2Q86WG5 1849 aa21.25■□□□□ 0.99
LSM1-204ENST00000522515 KAT6BQ8WYB5 2073 aa21.24■□□□□ 0.99
LSM1-204ENST00000522515 GOLGA2Q08379 1002 aa21.24■□□□□ 0.99
LSM1-204ENST00000522515 TMOD3Q9NYL9 352 aa21.24■□□□□ 0.99
LSM1-204ENST00000522515 LAS1LQ9Y4W2 734 aaKnown RBP21.24■□□□□ 0.99
LSM1-204ENST00000522515 EP400Q96L91 3159 aa21.24■□□□□ 0.99
LSM1-204ENST00000522515 IL16Q14005 1332 aa21.23■□□□□ 0.99
LSM1-204ENST00000522515 PIGBQ92521 554 aa21.23■□□□□ 0.99
LSM1-204ENST00000522515 CDCA7LQ96GN5 454 aa21.23■□□□□ 0.99
LSM1-204ENST00000522515 MIS18AQ9NYP9 233 aa21.23■□□□□ 0.99
LSM1-204ENST00000522515 NHSQ6T4R5 1651 aa21.23■□□□□ 0.99
LSM1-204ENST00000522515 PTF1AQ7RTS3 328 aa21.23■□□□□ 0.99
LSM1-204ENST00000522515 CFAP44Q96MT7 982 aa21.23■□□□□ 0.99
LSM1-204ENST00000522515 ZNF853P0CG23 659 aa21.22■□□□□ 0.99
LSM1-204ENST00000522515 GNAI1P63096 354 aa21.22■□□□□ 0.99
LSM1-204ENST00000522515 IFT57Q9NWB7 429 aa21.22■□□□□ 0.99
LSM1-204ENST00000522515 BTBD11A6QL63 1104 aa21.21■□□□□ 0.99
LSM1-204ENST00000522515 CHL1O00533 1208 aa21.21■□□□□ 0.99
LSM1-204ENST00000522515 SLFN5Q08AF3 891 aa21.19■□□□□ 0.98
LSM1-204ENST00000522515 SLC39A6Q13433 755 aa21.19■□□□□ 0.98
LSM1-204ENST00000522515 TSPYL4Q9UJ04 414 aa21.19■□□□□ 0.98
LSM1-204ENST00000522515 TRIM37O94972 964 aa21.19■□□□□ 0.98
LSM1-204ENST00000522515 TSR2Q969E8 191 aaKnown RBP21.19■□□□□ 0.98
LSM1-204ENST00000522515 MBIPQ9NS73 344 aa21.19■□□□□ 0.98
LSM1-204ENST00000522515 KDM3BQ7LBC6 1761 aa21.18■□□□□ 0.98
LSM1-204ENST00000522515 E9PSI1 815 aa21.18■□□□□ 0.98
LSM1-204ENST00000522515 KCNQ3O43525 872 aa21.18■□□□□ 0.98
LSM1-204ENST00000522515 BCL11BQ9C0K0 894 aaPredicted RBP21.18■□□□□ 0.98
LSM1-204ENST00000522515 BABAM1Q9NWV8 329 aa21.18■□□□□ 0.98
LSM1-204ENST00000522515 ASAP1Q9ULH1 1129 aa21.18■□□□□ 0.98
LSM1-204ENST00000522515 ZNF790Q6PG37 636 aa21.17■□□□□ 0.98
LSM1-204ENST00000522515 FANCIQ9NVI1 1328 aa21.16■□□□□ 0.98
LSM1-204ENST00000522515 PAPPAQ13219 1627 aa21.16■□□□□ 0.98
LSM1-204ENST00000522515 BTAF1O14981 1849 aa21.16■□□□□ 0.98
LSM1-204ENST00000522515 TRMT2AQ8IZ69 625 aaKnown RBP21.16■□□□□ 0.98
LSM1-204ENST00000522515 ATG3Q9NT62 314 aa21.16■□□□□ 0.98
LSM1-204ENST00000522515 MYH16Q9H6N6 1097 aa21.15■□□□□ 0.98
LSM1-204ENST00000522515 DUSP27Q5VZP5 1158 aa21.14■□□□□ 0.97
LSM1-204ENST00000522515 TTC5Q8N0Z6 440 aa21.14■□□□□ 0.97
LSM1-204ENST00000522515 EIF4A1P60842 406 aaKnown RBP21.12■□□□□ 0.97
LSM1-204ENST00000522515 UBR2Q8IWV8 1755 aa21.12■□□□□ 0.97
LSM1-204ENST00000522515 KCPQ6ZWJ8 1503 aa21.12■□□□□ 0.97
LSM1-204ENST00000522515 PTCD1O75127 700 aaKnown RBP21.11■□□□□ 0.97
LSM1-204ENST00000522515 KRT24Q2M2I5 525 aa21.11■□□□□ 0.97
LSM1-204ENST00000522515 ZNF496Q96IT1 587 aaPredicted RBP21.11■□□□□ 0.97
LSM1-204ENST00000522515 TNS1Q9HBL0 1735 aaKnown RBP21.1■□□□□ 0.97
LSM1-204ENST00000522515 PALLDQ8WX93 1383 aa21.1■□□□□ 0.97
LSM1-204ENST00000522515 EXOSC9Q06265 439 aaKnown RBP21.1■□□□□ 0.97
LSM1-204ENST00000522515 ILDR2Q71H61 639 aa21.1■□□□□ 0.97
LSM1-204ENST00000522515 SMARCC1Q92922 1105 aaPredicted RBP21.1■□□□□ 0.97
LSM1-204ENST00000522515 C8orf58Q8NAV2 365 aa21.09■□□□□ 0.97
LSM1-204ENST00000522515 FMNL2Q96PY5 1086 aa21.09■□□□□ 0.97
LSM1-204ENST00000522515 RBM42Q9BTD8 480 aaKnown RBP21.08■□□□□ 0.97
LSM1-204ENST00000522515 HEG1Q9ULI3 1381 aa21.08■□□□□ 0.96
LSM1-204ENST00000522515 ELL2O00472 640 aaPredicted RBP21.07■□□□□ 0.96
LSM1-204ENST00000522515 APBA3O96018 575 aa21.07■□□□□ 0.96
LSM1-204ENST00000522515 SLC4A9Q96Q91 983 aa21.07■□□□□ 0.96
LSM1-204ENST00000522515 TSPYL6Q8N831 410 aa21.06■□□□□ 0.96
LSM1-204ENST00000522515 PRAMEF22A3QJZ6 481 aa21.06■□□□□ 0.96
LSM1-204ENST00000522515 LY75O60449 1722 aa21.05■□□□□ 0.96
LSM1-204ENST00000522515 LOC102724428A0A0B4J2F2 783 aa21.05■□□□□ 0.96
LSM1-204ENST00000522515 GIGYF1O75420 1035 aaPredicted RBP21.05■□□□□ 0.96
LSM1-204ENST00000522515 SIK1P57059 783 aa21.05■□□□□ 0.96
LSM1-204ENST00000522515 PLSCR1O15162 318 aa21.03■□□□□ 0.96
LSM1-204ENST00000522515 SNRPA1P09661 255 aaKnown RBP21.03■□□□□ 0.96
LSM1-204ENST00000522515 TWISTNBQ3B726 338 aaPredicted RBP21.03■□□□□ 0.96
LSM1-204ENST00000522515 VSIG10Q8N0Z9 540 aa21.03■□□□□ 0.96
LSM1-204ENST00000522515 C5P01031 1676 aa21.03■□□□□ 0.96
LSM1-204ENST00000522515 ATP6V1AP38606 617 aa21.02■□□□□ 0.95
LSM1-204ENST00000522515 KCNQ4P56696 695 aa21.02■□□□□ 0.95
LSM1-204ENST00000522515 USP16Q9Y5T5 823 aa21.02■□□□□ 0.95
LSM1-204ENST00000522515 TJP1Q07157 1748 aa21.01■□□□□ 0.95
LSM1-204ENST00000522515 VAMP4O75379 141 aa21.01■□□□□ 0.95
LSM1-204ENST00000522515 SF3B2Q13435 895 aaKnown RBP21.01■□□□□ 0.95
LSM1-204ENST00000522515 DNAJC10Q8IXB1 793 aa21.01■□□□□ 0.95
LSM1-204ENST00000522515 ZNF831Q5JPB2 1677 aa21■□□□□ 0.95
LSM1-204ENST00000522515 HOXB7P09629 217 aa21■□□□□ 0.95
LSM1-204ENST00000522515 ITPK1Q13572 414 aa21■□□□□ 0.95
LSM1-204ENST00000522515 CCDC125Q86Z20 511 aa21■□□□□ 0.95
LSM1-204ENST00000522515 PROM2Q8N271 834 aa21■□□□□ 0.95
LSM1-204ENST00000522515 CCNL1Q9UK58 526 aaPredicted RBP21■□□□□ 0.95
LSM1-204ENST00000522515 CICQ96RK0 1608 aaPredicted RBP20.99■□□□□ 0.95
LSM1-204ENST00000522515 TXNRD1Q16881 649 aa20.99■□□□□ 0.95
LSM1-204ENST00000522515 LRRC4BQ9NT99 713 aa20.99■□□□□ 0.95
LSM1-204ENST00000522515 EIF2S2P20042 333 aaKnown RBP20.98■□□□□ 0.95
LSM1-204ENST00000522515 EN1Q05925 392 aaPredicted RBP20.98■□□□□ 0.95
LSM1-204ENST00000522515 UPF1Q92900 1129 aaKnown RBP eCLIP20.98■□□□□ 0.95
LSM1-204ENST00000522515 RGPD3A6NKT7 1758 aaPredicted RBP20.98■□□□□ 0.95
LSM1-204ENST00000522515 RGPD4Q7Z3J3 1758 aa20.98■□□□□ 0.95
LSM1-204ENST00000522515 SOS1Q07889 1333 aaPredicted RBP20.98■□□□□ 0.95
LSM1-204ENST00000522515 BAG6P46379 1132 aa20.97■□□□□ 0.95
LSM1-204ENST00000522515 DEFB132Q7Z7B7 95 aa20.97■□□□□ 0.95
LSM1-204ENST00000522515 NECTIN2Q92692 538 aa20.97■□□□□ 0.95
LSM1-204ENST00000522515 LAMB4A4D0S4 1761 aa20.97■□□□□ 0.95
LSM1-204ENST00000522515 CT47B1P0C2W7 299 aaPredicted RBP20.97■□□□□ 0.95
LSM1-204ENST00000522515 HDGFL1Q5TGJ6 251 aa20.97■□□□□ 0.95
LSM1-204ENST00000522515 CAMKK2Q96RR4 588 aa20.97■□□□□ 0.95
LSM1-204ENST00000522515 TEX13AQ9BXU3 409 aaPredicted RBP20.97■□□□□ 0.95
LSM1-204ENST00000522515 CYP19A1P11511 503 aaPredicted RBP20.96■□□□□ 0.95
LSM1-204ENST00000522515 EZH2Q15910 746 aaKnown RBP20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms