RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 NEUROD2Q15784 382 aa12.97□□□□□ -0.33
TOPBP1-209ENST00000513818 NFE2L2Q16236 605 aa12.97□□□□□ -0.33
TOPBP1-209ENST00000513818 RUNDC1Q96C34 613 aa12.97□□□□□ -0.33
TOPBP1-209ENST00000513818 THUMPD2Q9BTF0 503 aaKnown RBP12.97□□□□□ -0.33
TOPBP1-209ENST00000513818 SIPA1L3O60292 1781 aaPredicted RBP12.97□□□□□ -0.33
TOPBP1-209ENST00000513818 GNAT3A8MTJ3 354 aa12.96□□□□□ -0.33
TOPBP1-209ENST00000513818 RNMTO43148 476 aaKnown RBP12.96□□□□□ -0.33
TOPBP1-209ENST00000513818 MYCNP04198 464 aaPredicted RBP12.96□□□□□ -0.33
TOPBP1-209ENST00000513818 MCM10Q7L590 875 aa12.96□□□□□ -0.33
TOPBP1-209ENST00000513818 DCAF5Q96JK2 942 aa12.96□□□□□ -0.33
TOPBP1-209ENST00000513818 BCL11BQ9C0K0 894 aaPredicted RBP12.96□□□□□ -0.33
TOPBP1-209ENST00000513818 PAPPAQ13219 1627 aa12.95□□□□□ -0.34
TOPBP1-209ENST00000513818 SOCS7O14512 581 aa12.95□□□□□ -0.34
TOPBP1-209ENST00000513818 APAF1O14727 1248 aa12.95□□□□□ -0.34
TOPBP1-209ENST00000513818 APBA3O96018 575 aa12.95□□□□□ -0.34
TOPBP1-209ENST00000513818 HSP90AB1P08238 724 aaKnown RBP12.95□□□□□ -0.34
TOPBP1-209ENST00000513818 TMPOP42166 694 aaKnown RBP12.95□□□□□ -0.34
TOPBP1-209ENST00000513818 IL17REQ8NFR9 667 aa12.95□□□□□ -0.34
TOPBP1-209ENST00000513818 PNNQ9H307 717 aaKnown RBP12.95□□□□□ -0.34
TOPBP1-209ENST00000513818 RREB1Q92766 1687 aa12.94□□□□□ -0.34
TOPBP1-209ENST00000513818 RIPK4P57078 832 aa12.94□□□□□ -0.34
TOPBP1-209ENST00000513818 CABP4P57796 275 aa12.94□□□□□ -0.34
TOPBP1-209ENST00000513818 EN1Q05925 392 aaPredicted RBP12.94□□□□□ -0.34
TOPBP1-209ENST00000513818 SF3B2Q13435 895 aaKnown RBP12.94□□□□□ -0.34
TOPBP1-209ENST00000513818 PIGBQ92521 554 aa12.94□□□□□ -0.34
TOPBP1-209ENST00000513818 TMOD3Q9NYL9 352 aa12.94□□□□□ -0.34
TOPBP1-209ENST00000513818 LY75O60449 1722 aa12.93□□□□□ -0.34
TOPBP1-209ENST00000513818 SALL2Q9Y467 1007 aaPredicted RBP12.93□□□□□ -0.34
TOPBP1-209ENST00000513818 RGPD3A6NKT7 1758 aaPredicted RBP12.93□□□□□ -0.34
TOPBP1-209ENST00000513818 RGPD4Q7Z3J3 1758 aa12.93□□□□□ -0.34
TOPBP1-209ENST00000513818 NUP188Q5SRE5 1749 aa12.93□□□□□ -0.34
TOPBP1-209ENST00000513818 CEMIPQ8WUJ3 1361 aa12.93□□□□□ -0.34
TOPBP1-209ENST00000513818 BAG6P46379 1132 aa12.92□□□□□ -0.34
TOPBP1-209ENST00000513818 KCNQ4P56696 695 aa12.92□□□□□ -0.34
TOPBP1-209ENST00000513818 EZH2Q15910 746 aaKnown RBP12.92□□□□□ -0.34
TOPBP1-209ENST00000513818 SAMD1Q6SPF0 538 aaPredicted RBP12.92□□□□□ -0.34
TOPBP1-209ENST00000513818 NFATC2IPQ8NCF5 419 aa12.92□□□□□ -0.34
TOPBP1-209ENST00000513818 RTF1Q92541 710 aaKnown RBP12.92□□□□□ -0.34
TOPBP1-209ENST00000513818 SLC52A2Q9HAB3 445 aa12.92□□□□□ -0.34
TOPBP1-209ENST00000513818 PALLDQ8WX93 1383 aa12.92□□□□□ -0.34
TOPBP1-209ENST00000513818 ERVV-2B6SEH9 535 aa12.91□□□□□ -0.34
TOPBP1-209ENST00000513818 DAXXQ9UER7 740 aaPredicted RBP12.91□□□□□ -0.34
TOPBP1-209ENST00000513818 ASAP1Q9ULH1 1129 aa12.91□□□□□ -0.34
TOPBP1-209ENST00000513818 TRIM35Q9UPQ4 493 aa12.91□□□□□ -0.34
TOPBP1-209ENST00000513818 UBR2Q8IWV8 1755 aa12.9□□□□□ -0.34
TOPBP1-209ENST00000513818 KCPQ6ZWJ8 1503 aa12.9□□□□□ -0.34
TOPBP1-209ENST00000513818 TEFQ10587 303 aa12.9□□□□□ -0.34
TOPBP1-209ENST00000513818 SLC39A6Q13433 755 aa12.9□□□□□ -0.34
TOPBP1-209ENST00000513818 ATG3Q9NT62 314 aa12.9□□□□□ -0.34
TOPBP1-209ENST00000513818 KDM3BQ7LBC6 1761 aa12.89□□□□□ -0.35
TOPBP1-209ENST00000513818 CCDC125Q86Z20 511 aa12.89□□□□□ -0.35
TOPBP1-209ENST00000513818 MIS18AQ9NYP9 233 aa12.89□□□□□ -0.35
TOPBP1-209ENST00000513818 TJP1Q07157 1748 aa12.88□□□□□ -0.35
TOPBP1-209ENST00000513818 KCNQ3O43525 872 aa12.88□□□□□ -0.35
TOPBP1-209ENST00000513818 TXNRD1Q16881 649 aa12.88□□□□□ -0.35
TOPBP1-209ENST00000513818 CAMKK2Q96RR4 588 aa12.88□□□□□ -0.35
TOPBP1-209ENST00000513818 C5P01031 1676 aa12.88□□□□□ -0.35
TOPBP1-209ENST00000513818 HTATSF1O43719 755 aaKnown RBP12.87□□□□□ -0.35
TOPBP1-209ENST00000513818 PTCD1O75127 700 aaKnown RBP12.87□□□□□ -0.35
TOPBP1-209ENST00000513818 DSG3P32926 999 aa12.87□□□□□ -0.35
TOPBP1-209ENST00000513818 LMOD3Q0VAK6 560 aa12.87□□□□□ -0.35
TOPBP1-209ENST00000513818 PROM2Q8N271 834 aa12.87□□□□□ -0.35
TOPBP1-209ENST00000513818 TAF1LQ8IZX4 1826 aa12.86□□□□□ -0.35
TOPBP1-209ENST00000513818 BTBD11A6QL63 1104 aa12.86□□□□□ -0.35
TOPBP1-209ENST00000513818 SLC4A9Q96Q91 983 aa12.86□□□□□ -0.35
TOPBP1-209ENST00000513818 RBM42Q9BTD8 480 aaKnown RBP12.86□□□□□ -0.35
TOPBP1-209ENST00000513818 LRRC4BQ9NT99 713 aa12.86□□□□□ -0.35
TOPBP1-209ENST00000513818 CCNL1Q9UK58 526 aaPredicted RBP12.86□□□□□ -0.35
TOPBP1-209ENST00000513818 LAS1LQ9Y4W2 734 aaKnown RBP12.86□□□□□ -0.35
TOPBP1-209ENST00000513818 COL5A3P25940 1745 aaPredicted RBP12.85□□□□□ -0.35
TOPBP1-209ENST00000513818 PLSCR1O15162 318 aa12.85□□□□□ -0.35
TOPBP1-209ENST00000513818 ANO8Q9HCE9 1232 aaPredicted RBP12.85□□□□□ -0.35
TOPBP1-209ENST00000513818 TUBGCP6Q96RT7 1819 aa12.85□□□□□ -0.35
TOPBP1-209ENST00000513818 LOC102724428A0A0B4J2F2 783 aa12.84□□□□□ -0.35
TOPBP1-209ENST00000513818 SIK1P57059 783 aa12.84□□□□□ -0.35
TOPBP1-209ENST00000513818 ITPK1Q13572 414 aa12.84□□□□□ -0.35
TOPBP1-209ENST00000513818 SMARCC1Q92922 1105 aaPredicted RBP12.84□□□□□ -0.35
TOPBP1-209ENST00000513818 C4BP0C0L5 1744 aa12.84□□□□□ -0.35
TOPBP1-209ENST00000513818 TAF7Q15545 349 aaPredicted RBP12.83□□□□□ -0.36
TOPBP1-209ENST00000513818 ZNF790Q6PG37 636 aa12.83□□□□□ -0.36
TOPBP1-209ENST00000513818 WWC1Q8IX03 1113 aa12.83□□□□□ -0.36
TOPBP1-209ENST00000513818 TTC5Q8N0Z6 440 aa12.83□□□□□ -0.36
TOPBP1-209ENST00000513818 ZNF496Q96IT1 587 aaPredicted RBP12.83□□□□□ -0.36
TOPBP1-209ENST00000513818 TSPYL4Q9UJ04 414 aa12.83□□□□□ -0.36
TOPBP1-209ENST00000513818 CICQ96RK0 1608 aaPredicted RBP12.83□□□□□ -0.36
TOPBP1-209ENST00000513818 PRAMEF22A3QJZ6 481 aa12.82□□□□□ -0.36
TOPBP1-209ENST00000513818 ATP6V1AP38606 617 aa12.82□□□□□ -0.36
TOPBP1-209ENST00000513818 ZNF827Q17R98 1081 aa12.82□□□□□ -0.36
TOPBP1-209ENST00000513818 LINC00116Q8NCU8 138 aa12.82□□□□□ -0.36
TOPBP1-209ENST00000513818 ZNF831Q5JPB2 1677 aa12.82□□□□□ -0.36
TOPBP1-209ENST00000513818 LAMB4A4D0S4 1761 aa12.81□□□□□ -0.36
TOPBP1-209ENST00000513818 KRT24Q2M2I5 525 aa12.81□□□□□ -0.36
TOPBP1-209ENST00000513818 SMIM5Q71RC9 77 aa12.81□□□□□ -0.36
TOPBP1-209ENST00000513818 DNAJC10Q8IXB1 793 aa12.81□□□□□ -0.36
TOPBP1-209ENST00000513818 HEG1Q9ULI3 1381 aa12.81□□□□□ -0.36
TOPBP1-209ENST00000513818 HNRNPUQ00839 825 aaKnown RBP eCLIP12.8□□□□□ -0.36
TOPBP1-209ENST00000513818 CCDC27Q2M243 656 aa12.8□□□□□ -0.36
TOPBP1-209ENST00000513818 SLC27A3Q5K4L6 730 aa12.8□□□□□ -0.36
TOPBP1-209ENST00000513818 TSR2Q969E8 191 aaKnown RBP12.8□□□□□ -0.36
TOPBP1-209ENST00000513818 ZNF219Q9P2Y4 722 aaPredicted RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms