RNA–Protein interactions for RNA: ENST00000486235.5

TMEM39A-209, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-209ENST00000486235 VARSP26640 1264 aaKnown RBP10.28□□□□□ -0.76
TMEM39A-209ENST00000486235 NNTQ13423 1086 aa10.28□□□□□ -0.76
TMEM39A-209ENST00000486235 GMPRP36959 345 aa10.27□□□□□ -0.77
TMEM39A-209ENST00000486235 CSPP1Q1MSJ5 1256 aa10.27□□□□□ -0.77
TMEM39A-209ENST00000486235 DESI1Q6ICB0 168 aa10.27□□□□□ -0.77
TMEM39A-209ENST00000486235 RSBN1LQ6PCB5 846 aaPredicted RBP10.27□□□□□ -0.77
TMEM39A-209ENST00000486235 MED14O60244 1454 aa10.27□□□□□ -0.77
TMEM39A-209ENST00000486235 NCOA2Q15596 1464 aa10.27□□□□□ -0.77
TMEM39A-209ENST00000486235 PLEKHG3A1L390 1219 aa10.26□□□□□ -0.77
TMEM39A-209ENST00000486235 ARID5BQ14865 1188 aa10.26□□□□□ -0.77
TMEM39A-209ENST00000486235 LYPD8Q6UX82 237 aa10.26□□□□□ -0.77
TMEM39A-209ENST00000486235 PARP9Q8IXQ6 854 aa10.26□□□□□ -0.77
TMEM39A-209ENST00000486235 FOXJ1Q92949 421 aa10.26□□□□□ -0.77
TMEM39A-209ENST00000486235 LRRC7Q96NW7 1537 aa10.26□□□□□ -0.77
TMEM39A-209ENST00000486235 DEPDC5O75140 1603 aa10.25□□□□□ -0.77
TMEM39A-209ENST00000486235 IQGAP1P46940 1657 aa10.25□□□□□ -0.77
TMEM39A-209ENST00000486235 TSPY4P0CV99 314 aa10.25□□□□□ -0.77
TMEM39A-209ENST00000486235 TSPY10P0CW01 314 aa10.25□□□□□ -0.77
TMEM39A-209ENST00000486235 WDR4P57081 412 aaKnown RBP10.25□□□□□ -0.77
TMEM39A-209ENST00000486235 CABLES1Q8TDN4 633 aa10.25□□□□□ -0.77
TMEM39A-209ENST00000486235 MAP10Q9P2G4 905 aa10.25□□□□□ -0.77
TMEM39A-209ENST00000486235 ABCC3O15438 1527 aa10.24□□□□□ -0.77
TMEM39A-209ENST00000486235 SOBPA7XYQ1 873 aa10.24□□□□□ -0.77
TMEM39A-209ENST00000486235 HRCP23327 699 aa10.24□□□□□ -0.77
TMEM39A-209ENST00000486235 BCANQ96GW7 911 aa10.24□□□□□ -0.77
TMEM39A-209ENST00000486235 PURBQ96QR8 312 aaKnown RBP10.24□□□□□ -0.77
TMEM39A-209ENST00000486235 STRCP1A6NGW2 1772 aa10.24□□□□□ -0.77
TMEM39A-209ENST00000486235 ERVK-7P63135 1459 aa10.23□□□□□ -0.77
TMEM39A-209ENST00000486235 TRIM66O15016 1216 aa10.23□□□□□ -0.77
TMEM39A-209ENST00000486235 FAM174AQ8TBP5 190 aa10.23□□□□□ -0.77
TMEM39A-209ENST00000486235 TSC1Q92574 1164 aa10.23□□□□□ -0.77
TMEM39A-209ENST00000486235 RNF17Q9BXT8 1623 aaKnown RBP10.22□□□□□ -0.77
TMEM39A-209ENST00000486235 SPTLC1O15269 473 aa10.22□□□□□ -0.77
TMEM39A-209ENST00000486235 TIMP2P16035 220 aa10.22□□□□□ -0.77
TMEM39A-209ENST00000486235 MRPL14Q6P1L8 145 aaKnown RBP10.22□□□□□ -0.77
TMEM39A-209ENST00000486235 RIC3Q7Z5B4 369 aa10.22□□□□□ -0.77
TMEM39A-209ENST00000486235 IRF7Q92985 503 aa10.22□□□□□ -0.77
TMEM39A-209ENST00000486235 ZBTB3Q9H5J0 574 aa10.22□□□□□ -0.77
TMEM39A-209ENST00000486235 ARHGEF5Q12774 1597 aa10.22□□□□□ -0.77
TMEM39A-209ENST00000486235 GJA5P36382 358 aa10.21□□□□□ -0.77
TMEM39A-209ENST00000486235 SCARF1Q14162 830 aa10.21□□□□□ -0.77
TMEM39A-209ENST00000486235 AGERQ15109 404 aa10.21□□□□□ -0.77
TMEM39A-209ENST00000486235 DIXDC1Q155Q3 683 aa10.21□□□□□ -0.77
TMEM39A-209ENST00000486235 ERBB4Q15303 1308 aa10.21□□□□□ -0.78
TMEM39A-209ENST00000486235 SYNMO15061 1565 aa10.21□□□□□ -0.78
TMEM39A-209ENST00000486235 H3BM21 787 aa10.2□□□□□ -0.78
TMEM39A-209ENST00000486235 PER1O15534 1290 aaPredicted RBP10.2□□□□□ -0.78
TMEM39A-209ENST00000486235 ADH1CP00326 375 aa10.2□□□□□ -0.78
TMEM39A-209ENST00000486235 LTKP29376 864 aa10.2□□□□□ -0.78
TMEM39A-209ENST00000486235 TXNDC2Q86VQ3 553 aa10.2□□□□□ -0.78
TMEM39A-209ENST00000486235 MPNDQ8N594 471 aa10.2□□□□□ -0.78
TMEM39A-209ENST00000486235 SCAF11Q99590 1463 aaKnown RBP10.2□□□□□ -0.78
TMEM39A-209ENST00000486235 RGS17Q9UGC6 210 aaPredicted RBP10.2□□□□□ -0.78
TMEM39A-209ENST00000486235 ZFAND3Q9H8U3 227 aa10.19□□□□□ -0.78
TMEM39A-209ENST00000486235 ZC3H13Q5T200 1668 aaKnown RBP10.18□□□□□ -0.78
TMEM39A-209ENST00000486235 F12P00748 615 aaPredicted RBP10.18□□□□□ -0.78
TMEM39A-209ENST00000486235 KLF16Q9BXK1 252 aaPredicted RBP10.18□□□□□ -0.78
TMEM39A-209ENST00000486235 MROH1Q8NDA8 1641 aa10.18□□□□□ -0.78
TMEM39A-209ENST00000486235 CFAP65Q6ZU64 1925 aaKnown RBP10.17□□□□□ -0.78
TMEM39A-209ENST00000486235 CEP152O94986 1710 aa10.17□□□□□ -0.78
TMEM39A-209ENST00000486235 UBR1Q8IWV7 1749 aa10.17□□□□□ -0.78
TMEM39A-209ENST00000486235 NUTM2BA6NNL0 878 aaPredicted RBP10.17□□□□□ -0.78
TMEM39A-209ENST00000486235 NUTM2EB1AL46 878 aaPredicted RBP10.17□□□□□ -0.78
TMEM39A-209ENST00000486235 ZIC2O95409 532 aaPredicted RBP10.17□□□□□ -0.78
TMEM39A-209ENST00000486235 C4orf48Q5BLP8 95 aa10.17□□□□□ -0.78
TMEM39A-209ENST00000486235 C6orf118Q5T5N4 469 aa10.17□□□□□ -0.78
TMEM39A-209ENST00000486235 NUTM2DQ5VT03 806 aaPredicted RBP10.17□□□□□ -0.78
TMEM39A-209ENST00000486235 NUTM2AQ8IVF1 878 aaPredicted RBP10.17□□□□□ -0.78
TMEM39A-209ENST00000486235 NPAS3Q8IXF0 933 aa10.17□□□□□ -0.78
TMEM39A-209ENST00000486235 ZSCAN1Q8NBB4 408 aa10.17□□□□□ -0.78
TMEM39A-209ENST00000486235 AK7Q96M32 723 aa10.17□□□□□ -0.78
TMEM39A-209ENST00000486235 MAST1Q9Y2H9 1570 aa10.17□□□□□ -0.78
TMEM39A-209ENST00000486235 EIF2AK4Q9P2K8 1649 aaKnown RBP10.16□□□□□ -0.78
TMEM39A-209ENST00000486235 NR3C2P08235 984 aa10.16□□□□□ -0.78
TMEM39A-209ENST00000486235 QPCTQ16769 361 aa10.16□□□□□ -0.78
TMEM39A-209ENST00000486235 ITPKCQ96DU7 683 aa10.16□□□□□ -0.78
TMEM39A-209ENST00000486235 CDK15Q96Q40 435 aa10.16□□□□□ -0.78
TMEM39A-209ENST00000486235 LIMD1Q9UGP4 676 aa10.16□□□□□ -0.78
TMEM39A-209ENST00000486235 EID1Q9Y6B2 187 aa10.16□□□□□ -0.78
TMEM39A-209ENST00000486235 LRRC9Q6ZRR7 1453 aa10.16□□□□□ -0.78
TMEM39A-209ENST00000486235 ARHGAP23Q9P227 1491 aa10.16□□□□□ -0.78
TMEM39A-209ENST00000486235 LORP23490 312 aaPredicted RBP10.15□□□□□ -0.78
TMEM39A-209ENST00000486235 KANK4Q5T7N3 995 aaPredicted RBP10.15□□□□□ -0.78
TMEM39A-209ENST00000486235 POTEAQ6S8J7 498 aa10.15□□□□□ -0.78
TMEM39A-209ENST00000486235 SLIT1O75093 1534 aa10.15□□□□□ -0.78
TMEM39A-209ENST00000486235 TMEM94Q12767 1356 aa10.14□□□□□ -0.79
TMEM39A-209ENST00000486235 DUOX2Q9NRD8 1548 aa10.14□□□□□ -0.79
TMEM39A-209ENST00000486235 PRPF38BQ5VTL8 546 aaKnown RBP10.14□□□□□ -0.79
TMEM39A-209ENST00000486235 KIF15Q9NS87 1388 aa10.14□□□□□ -0.79
TMEM39A-209ENST00000486235 TMEM2Q9UHN6 1383 aa10.14□□□□□ -0.79
TMEM39A-209ENST00000486235 XIRP1Q702N8 1843 aaKnown RBP10.13□□□□□ -0.79
TMEM39A-209ENST00000486235 FAM181BA6NEQ2 426 aa10.13□□□□□ -0.79
TMEM39A-209ENST00000486235 PRKCSHP14314 528 aaPredicted RBP10.13□□□□□ -0.79
TMEM39A-209ENST00000486235 GRM5P41594 1212 aa10.13□□□□□ -0.79
TMEM39A-209ENST00000486235 MYSM1Q5VVJ2 828 aa10.13□□□□□ -0.79
TMEM39A-209ENST00000486235 RRP7BPQ9NSQ0 103 aa10.13□□□□□ -0.79
TMEM39A-209ENST00000486235 FAM135BQ49AJ0 1406 aa10.13□□□□□ -0.79
TMEM39A-209ENST00000486235 PIK3C2BO00750 1634 aa10.12□□□□□ -0.79
TMEM39A-209ENST00000486235 BPHLQ86WA6 291 aaPredicted RBP10.12□□□□□ -0.79
TMEM39A-209ENST00000486235 PROSER2Q86WR7 435 aaPredicted RBP10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms